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https://www.sartorius.com/en/products/protein-analysis/octet-bli-detection/octet-systems-software
Octet BLI systems enable real-time, label-free analysis for determination of kinetics, affinity and antibody/protein quantitation. Includes Octet Analysis Studio for analysis of assays measuring kinetics and affinity values for drug-target binding and high-throughput kinetic screening for lead identification. Typical applications include kinetic analysis of protein-protein, protein-small molecules, antibody-antigen, antibody-VLP, antibody-Fc gamma receptors, including antibody-neonatal receptor (FcRn) interactions. Additional applications supported include lot release and stability analysis of drug molecules based on binding kinetics and affinity.
Proper citation: Thermo Fisher: Sartorius: Octet BLI systems (RRID:SCR_023267) Copy
Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments.
Proper citation: Enroll-HD (RRID:SCR_023300) Copy
https://www.eppendorf.com/gb-en/eShop-Products/PCR/Thermocyclers/Mastercycler-nexus-p-PF-14698
Thermal cycler conduct PCR runs with range of standard vessel types, from 0.2 mL tubes to 96 well plates using single 96-well aluminum block. Can accommodate 96-well PCR plates, 0.2 mL PCR tubes, 0.2 mL PCR tube strips, and 0.5 mL PCR tubes.Mastercycler nexus cycler can email you when PCR run is complete.
Proper citation: Eppendorf: Mastercycler nexus PCR Thermal Cycler (RRID:SCR_023266) Copy
https://github.com/pirovc/grimer
Software tool to perform analysis of microbiome studies and generates portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
Proper citation: GRIMER (RRID:SCR_023265) Copy
Repository of metadata and data that describes and provides access to diverse data sets generated by Arctic and Antarctic researchers.Metadata records follow ISO 19115 and Federal Geographic Data Committee standard formats to provide exchange with other data centres.Records cover wide range of disciplines from natural sciences and policy, to health and social sciences. The PDC Geospatial Search tool is available to the public and researchers alike and allows searching data using mapping interface and other parameters.
Proper citation: Canadian Polar Data Network (RRID:SCR_023143) Copy
http://www.utoledo.edu/med/depts/neurosciences/
The Department of Neurosciences at the University of Toledo Health Sciences Campus is highly committed to advancing the state of knowledge of nervous system structure and function through a tripartite mission of innovative research, state-of-the-art teaching methods, and dedicated service to the broader academic and surrounding communities.
Proper citation: University of Toledo Department of Neurosciences (RRID:SCR_007487) Copy
https://github.com/saeyslab/nichenetr
Software tool as R implementation of NicheNet method to predict active ligand-target links between interacting cells. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest.
Proper citation: NicheNet (RRID:SCR_023158) Copy
https://bioscience.lonza.com/lonza_bs/JP/en/Transfection/p/000000000000276883/4D-Nucleofector-X-Unit
One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats.
Proper citation: Lonza: 4D Nucleofector X Unit (RRID:SCR_023155) Copy
https://www.thermofisher.com/order/catalog/product/50143210?SID=srch-srp-50143210
Storage used for high capacity random access storage (210 SBS microplates) at ambient conditions. The Cytomat 10 Hotel (PH) offers multiple transfer positions, dual access point (DAP) and as combined benchtop-under bench solution, it allows flexible placement within the laboratory.
Proper citation: Thermo Fisher: Cytomat 10 Hotel Ambient Storage (RRID:SCR_023273) Copy
Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions.
Proper citation: QuestionPro (RRID:SCR_023309) Copy
http://quantprime.mpimp-golm.mpg.de
Fully automated tool for primer pair design in small- to large-scale real-time reverse transcription qPCR analyses. It offers design and specificity checking with highly customizable parameters and is available for use with publicly available eukaryotic transcriptomes.
Proper citation: QuantPrime (RRID:SCR_015498) Copy
http://samurai-graph.sourceforge.jp/
Samurai Graph is a highly functional and user-friendly graph plotter. It can plot the graphs from the scalar to vector type 2-dimensional data. Samurai Graph is an open source development project, released under the GNU Lesser General Public License (LGPL). Samurai Graph is Java-based and platform-independent application. It runs on most major operating systems including MS-Windows, Linux, MacOS X, FreeBSD., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Samurai Graph: A highly functional and user-friendly graph plotter (RRID:SCR_013594) Copy
http://www.vsh.com/products/mflt/index.asp
Modeling software for flow cytometry histograms. Models for cell-tracking dye studies and synchronized cell lines are built right into the software.
Proper citation: ModFit LT (RRID:SCR_016106) Copy
https://github.com/IGGoncalves/PhysiCOOL
Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects.
Proper citation: PhysiCOOL (RRID:SCR_023305) Copy
https://www.medicalexpo.com/ja/prod/erma/product-68401-922563.html
Automatic cell counting instrument. Used to count blood cells.
Proper citation: ERMA: Automatic blood cell counter PCE-210N (RRID:SCR_023148) Copy
https://github.com/AIRI-Institute/DeepCT
Software tool can learn complex interconnections of epigenetic features and infer unmeasured data from any available input. Can learn cell type-specific properties, build biologically meaningful vector representations of cell types, and utilize these representations to generate cell type-specific predictions of effects of non-coding variations in human genome.
Proper citation: DeepCT (RRID:SCR_023302) Copy
HTAN is National Cancer Institute funded Cancer Moonshot initiative to construct 3-dimensional atlases of dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease.Provides three dimensional atlases of cancer transitions for diverse set of tumor types. Efforts to map healthy organs and previous large-scale cancer genomics approaches focused on bulk sequencing at single point in time. Data portal for Human Tumor Atlas Network. Data available on HTAN Portal is open access. Certain data types with potential for re-identification are available in restricted access through dbGAP.
Proper citation: Human Tumor Atlas Network (RRID:SCR_023364) Copy
Research assistant using language models like GPT-3 to automate parts of researchers’ workflows. Main workflow is Literature Review. If you ask question, Elicit will show relevant papers and summaries of key information about those papers in easy-to-use table.
Proper citation: Elicit (RRID:SCR_023362) Copy
Productivity and collaboration PDF solution, combining Acrobat desktop software, mobile scan app, signature app and Acrobat Reader mobile app enhanced with premium mobile features and premium Document Cloud services.
Proper citation: Adobe Acrobat Pro (RRID:SCR_023361) Copy
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