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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Fluidigm: Hyperion Imaging System Resource Report Resource Website 10+ mentions |
Fluidigm: Hyperion Imaging System (RRID:SCR_023195) | instrument resource | Imaging system enables comprehensive analysis of cellular phenotypes. Allows access to single cell insights. This includes deeper understanding of intricate spatial relationships of cells, pathways and phenotypes in tissue microenvironment. | Standard BioTools Inc., imaging mass cytometry, cellular phenotypes, single cell, tissue microenvironment, imaging, instrument, equipment, USEDit, | is listed by: USEDit | SCR_023195 | Hyperion™ Imaging System | 2026-09-05 06:30:21 | 11 | ||||||||||
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LI-COR: Odyssey Fc Imaging System Resource Report Resource Website 10+ mentions |
LI-COR: Odyssey Fc Imaging System (RRID:SCR_023227) | instrument resource | System used to image and analyze Western blots. Odyssey Fc imager has been discontinued. | LI-COR Bioscience, gel imager, LI-COR imaging system, Fc Imaging System, instrument, equipment, USEDit | is listed by: USEDit | Restricted | https://licor.app.boxenterprise.net/s/2o234webfretfxbk3m3k | SCR_023227 | 2026-09-05 06:30:22 | 14 | |||||||||
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UpSetPlot Resource Report Resource Website 1+ mentions |
UpSetPlot (RRID:SCR_023225) | data processing software, data visualization software, software application, software resource | Software Python implementation of UpSet plots to visualize set overlaps. | UpSet plots, Python, visualize set overlaps, | Air Force Research Laboratory ; Austrian Science Fund ; DARPA ; NHGRI K99 HG007583 |
PMID:26356912 | Free, Available for download, Freely available | SCR_023225 | 2026-09-05 06:30:22 | 7 | |||||||||
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Time in Motor Games (Tiempo en Juegos Motores) Resource Report Resource Website |
Time in Motor Games (Tiempo en Juegos Motores) (RRID:SCR_015819) | software resource, web application | Web application that records the time devoted to each of the actions that are performed while playing motor games or active games. This recording system has applications in physical activity research and physical education. | time recording, physical education, academic learning time, motor games, time observation, record, active games | Freely available, Free for academic use | SCR_015819 | Time in Motor Games, Tiempo en Juegos Motores | 2026-09-05 06:30:21 | 0 | ||||||||||
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CRISPOR Resource Report Resource Website 1000+ mentions |
CRISPOR (RRID:SCR_015935) | software resource, web application | Web application that helps design, evaluate and clone guide sequences for the CRISPR/Cas9 system. This sgRNA design tool assists with guide selection in a variety of genomes and pre-calculated results for all human coding exons as a UCSC Genome Browser track. | rna, sg, sgrna, crispr, genome, off-target, prediction, accuracy, clone, cas9, coding, exon | is related to: UCSC Genome Browser | Agence Nationale pour la Recherche ; California Institute of Regenerative Medicine GC1R-06673C; Fondation pour la Recherche Médicale DEQ20140329544; MRC 53658; NCI U54 HG007990; NHGRI U41 HG002371; NIH Office of the Director U42 OD011174 |
PMID:27380939 | Free, Available for download | https://github.com/maximilianh/crisporWebsite | SCR_015935 | 2026-09-05 06:30:21 | 1658 | |||||||
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Children's Hospital Association Pediatric Health Information System Resource Report Resource Website 1+ mentions |
Children's Hospital Association Pediatric Health Information System (RRID:SCR_023168) | PHIS | data or information resource, database, portal, topical portal | Comparative database with clinical and resource utilization data for inpatient, ambulatory surgery, emergency department and observation unit encounters for more than 49 children's hospitals. | Children's hospitals, PHIS database, pediatrics data, clinical and resource utilization data, inpatient data, ambulatory surgery data, emergency department data, observation unit data | Free, Freely available | SCR_023168 | Pediatric Health Information System | 2026-09-05 06:30:21 | 5 | |||||||||
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BLIMP: Biomedical LIterature Mining Publications Resource Report Resource Website 1+ mentions |
BLIMP: Biomedical LIterature Mining Publications (RRID:SCR_007112) | BLIMP | bibliography, data or information resource | Bibliography covering all publications related to the fast-growing field of biomedical literature and text mining. This forum for collecting, compiling and sharing is a one-stop resource, letting researchers find out who-does-what in the area and where it is published, bridging across the many discipline-specific venues in which biomedical text-mining papers are published. If you know of a relevant paper that is missing from BLIMP, or have an accepted-for-publication paper, PhD/MSc thesis or a technical report, that you believe is relevant to biomedical text mining, fill in the submission form. The fast-growing field of biomedical literature mining is highly-interdisciplinary. Publications appear in forums ranging from the SIGIR conferences (the ACM Special Interest group on Information Retrieval) to journals such as Nature and Science, with the whole range of bioinformatics forums in-between. To substantially contribute, one must know what was/is being done in this diverse area, and place the work in context - both biologically and computationally. Instead of starting a journal fully dedicated to biomedical literature mining, thus creating yet another publication venue, this site offers an alternative: It holds in one place a compilation of references to relevant papers that have been published or accepted for publication. | biomedical, literature, text mining, bibliography, journal, text, biomedicine, natural language processing, information extraction, information retrieval, text categorization, ontology | has parent organization: Queens University; Ontario; Canada | Natural Sciences and Engineering Research Council of Canada ; Queen's University Principal's Development Award ; NSERC Discovery 298292-04 |
The community can contribute to this resource | nif-0000-21063 | SCR_007112 | Biomedical LIterature (and text) Mining Publications | 2026-09-05 06:30:21 | 1 | ||||||
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Andor: iXon Ultra EMCCD camera Resource Report Resource Website 1+ mentions |
Andor: iXon Ultra EMCCD camera (RRID:SCR_023166) | instrument resource | Scientific camera with EMCCD image sensor that is capable of detecting single photon events without image intensifier, achievable by way of unique electron multiplying structure built into the chip. | Instrument, Equipment, USEDit, Andor, scientific camera, EMCCD image sensor | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_023166.pdf | SCR_023166 | 2026-09-05 06:30:21 | 5 | ||||||||||
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Andor: Luca S EMCCD camera Resource Report Resource Website 1+ mentions |
Andor: Luca S EMCCD camera (RRID:SCR_023165) | instrument resource | Luca-S camera of single photon sensitive imaging Andor family scientific cameras with Electron Multiplying Charge Coupled Device detector, designed for most challenging low-light imaging applications. | Instrument, Equipment, USEDit, Andor, single photon sensitive imaging camera, scientific camera, Electron Multiplying Charge Coupled Device detector | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_023165.pdf | SCR_023165 | 2026-09-05 06:30:21 | 1 | ||||||||||
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Heka Elektronik: InstruTECH ITC-18 Resource Report Resource Website 1+ mentions |
Heka Elektronik: InstruTECH ITC-18 (RRID:SCR_023164) | instrument resource | Second generation low noise 16 bit computer interface from Instrutech Corporation. 16-bit Multi-Channel Data Acquisition Interface with PCI or USB host adapter. | Instrument, Equipment, USEDit, AutoMate Scientific Inc., computer interface, Instrutech, multi channel data acquisition interface | is listed by: USEDit | SCR_023167 | https://alascience.com/products/pdf/p_itc18.pdf | SCR_023164 | 2026-09-05 06:30:21 | 3 | |||||||||
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Human Thalamus in 3D Stereotactic Coordinates Resource Report Resource Website 1+ mentions |
Human Thalamus in 3D Stereotactic Coordinates (RRID:SCR_014214) | data or information resource, image collection | A research tool for clinical and experimental neuroscience, which provides images of human thalamus in the stereotactic planes of the coordinate system based on intercommissural line. Images include histological sagittal sections, sagittal maps, coronal maps, horizontal maps, and MRI images all from the same brain. The website also provides materials and methods section, references to the articles and presentations describing research data (on which the maps are based), and a bibliography on the synaptic relationships of subcortical and cortical afferents with projection and local circuit neurons in the motor thalamus. | Thalamic motor nuclei, stereotactic atlas plates, AC-PC coordinates, VIM, thalamic nomenclatures, Nigrothalamic projection zone, Pallidothalamic projection zone, Cerebellothalamic projection zone, Thalamic GABAergic circuits, GAD65 | has parent organization: University of Iowa; Iowa; USA | Register to access original images, Acknowledgement requested | SCR_014214 | human motor thalamus | 2026-09-05 06:30:21 | 1 | |||||||||
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Variant Prediction Tools Evaluation Resource Report Resource Website 1+ mentions |
Variant Prediction Tools Evaluation (RRID:SCR_023314) | VETA | data analysis software, data processing software, software application, software resource | Software tool that analyses performance of several variant prediction methods at different levels. Used to benchmark variant effect predictors from VCF files. | variant prediction, benchmark variant effect predictors, VCF files | is related to: Benchmark of human deep intronic variation | DOI:10.3389/fcvm.2022.975478 | Free, Available for download, Freely available | https://samtools.github.io/hts-specs/VCFv4.2.pdf | SCR_023314 | Variant prEdiction Tools evAluation | 2026-09-05 06:30:22 | 2 | ||||||
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UCSC Cell Browser Resource Report Resource Website 100+ mentions |
UCSC Cell Browser (RRID:SCR_023293) | data access protocol, software resource, web service | Web based tool to visualize gene expression and metadata annotation distribution throughout single cell dataset or multiple datasets. Interactive viewer for single cell expression. You can click on and hover over cells to get meta information, search for genes to color on and click clusters to show cluster specific marker genes. | visualize gene expression, metadata annotation distribution, single cell data viewer, cluster specific marker genes, single cell expression, |
is related to: Allen Institute for Brain Science is related to: BRAIN Initiative Cell Atlas Network has parent organization: University of California at Santa Cruz; California; USA |
Brain and Behavior Research Foundation ; California Institute for Regenerative Medicine ; Chan Zuckerberg Initiative Foundation ; NHGRI 1U41HG010972; NHGRI 5R01HG010329; NHGRI 5U41HG002371; NIMH DP2MH122400; NIMH RF1MH121268; NIMH U01MH114825; NINDS K99 NS111731; Silicon Valley Community Foundation ; Simons Foundation ; University of California Office of the President Emergency COVID-19 Research Seed Funding |
PMID:34244710 | Free, Freely available | https://cellbrowser.readthedocs.io/en/master/, https://github.com/maximilianh/cellBrowser | SCR_023293 | 2026-09-05 06:30:22 | 155 | |||||||
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Musculoskeletal Knowledge Portal Resource Report Resource Website 10+ mentions |
Musculoskeletal Knowledge Portal (RRID:SCR_023171) | MSK-KP | data or information resource, disease-related portal, portal, topical portal | Portal enables browsing, searching, and analysis of human genetic and genomic information linked to musculoskeletal traits and diseases, while protecting the integrity and confidentiality of underlying data. | genomic data mining, human genetic data, genomic information, musculoskeletal traits and diseases data, DRKB | musculoskeletal disease | NIH AR085003 | PMID:34686856 | Free, Freely available | https://msk.hugeamp.org/ | SCR_023171 | 2026-09-05 06:30:21 | 26 | ||||||
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Case Western Reserve University School of Medicine Department of Pharmacology Resource Report Resource Website |
Case Western Reserve University School of Medicine Department of Pharmacology (RRID:SCR_007220) | data or information resource, department portal, organization portal, portal | Department of Pharmacology research mission is to discover specific mechanisms that control physiological processes at cellular and molecular levels. Department offers broad range of educational opportunities ranging from undergraduate research to classes leading toward Ph.D. and M.D.Training Programs include MOLECULAR THERAPEUTICS TRAINING PROGRAM, BIOMEDICAL SCIENCES TRAINING PROGRAM, MEDICAL SCIENTIST TRAINING PROGRAM, SUMMER UNDERGRADUATE RESEARCH PROGRAM, Cancer Pharmacology Training Program. | has parent organization: Case Western Reserve University; Ohio; USA | nif-0000-01911 | http://pharmacology.cwru.edu/ | SCR_007220 | Case Western; Dept. of Pharmacology, Case Western; SOM; Dept. of Pharmacology | 2026-09-05 06:30:21 | 0 | |||||||||
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FunGAP Resource Report Resource Website 1+ mentions |
FunGAP (RRID:SCR_023213) | FunGAP | simulation software, software application, software resource | Software tool to predict protein coding genes in fungal genome assembly. Performs gene prediction on given genome assembly and RNA-seq reads. Runs multiple gene predictors, evaluates all predicted genes, and assembles gene models that are highly supported by homology to known sequences. | Genome annotation, predict protein-coding genes, fungal genome assembly, RNA-seq reads, gene prediction | Rural Development Administration ; Republic of Korea ; School of Life Sciences and Biotechnology for BK21 PLUS ; Korea University |
PMID:28582481 | Free, Available for download, Freely available | SCR_023213 | Fungal Genome Annotation Pipeline | 2026-09-05 06:30:21 | 2 | |||||||
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airr_tools Resource Report Resource Website 1+ mentions |
airr_tools (RRID:SCR_023297) | software resource | Github repository for the paper "T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases" by Høye et al. | Github repository for the paper, T cell receptor repertoire, repertoire sequencing, clonal expansion, colorectal liver metastases | Free, Available for download, Freely available | SCR_023297 | 2026-09-05 06:30:22 | 1 | |||||||||||
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Yevis web Resource Report Resource Website 1+ mentions |
Yevis web (RRID:SCR_023205) | software resource, web application | Web application for browsing Yevis workflow registry. | browsing Yevis workflow registry, Yevis workflow registry | is related to: Yevis cli | Free, Freely available | SCR_023205 | Yevis-web | 2026-09-05 06:30:21 | 1 | |||||||||
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loadBAM2ge_db Resource Report Resource Website 1+ mentions |
loadBAM2ge_db (RRID:SCR_015951) | data processing software, data visualization software, software application, software resource | Software pipeline that visualizes mapping results (in BAM format) on Genome Explorer. | bam, map, mapping, genome, pipeline, maser, visualization, explorer | Public | SCR_015951 | loadBAM2ge_db (PE) | 2026-09-05 06:30:21 | 1 | ||||||||||
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CURVES plus Resource Report Resource Website 10+ mentions |
CURVES plus (RRID:SCR_023268) | software resource, web application | Web server for analyzing and visualizing helical, backbone and groove parameters of nucleic acid structures. Can also be used to analyse molecular dynamics trajectories., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | analyzing, visualizing, helical, backbone and groove parameters, nucleic acid structures, molecular dynamics trajectories analysis, | Swiss National Science Foundation | PMID:19625494 PMID:21558323 |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:curves | https://bio.tools/curves | SCR_023268 | Curves+ | 2026-09-05 06:30:22 | 17 |
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