Tools   Select Another Resource Report Type

https://research.manchester.ac.uk/en/equipments/x-ray-diffraction-platform

Core to bring together community of knowledge and best practise from three Faculty of Science and Engineering Departments: Chemistry, EES and Materials. Provided equipment is housed across numerous parts of campus with bulk being operated from Engineering Building A and Chemistry. Offers technical expertise in techniques such as residual stress analysis, texture analysis, phase identification in crystalline and semi crystalline powders and solid materials, single crystal and small angle scattering. Machines are available for examination of both small specimens and large components, and for wide range of materials.

Proper citation: University of Manchester X-ray Diffraction Platform Core Facility (RRID:SCR_024785) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/magnetic-resonance-and-related-technology-mrr

Core is equipped with instrumentation supporting areas of NMR, EPR and related techniques.

Proper citation: University of Manchester Magnetic Resonance and Related Technology Platform Core Facility (RRID:SCR_024786) Copy   

•   Source: SciCrunch Registry

https://research.lsuhs.edu/cores/research-core-facilities/small-animal-imaging-facility

Core provides imaging support to investigators who use small animal models in their research. Offers bioluminescence and fluorescence imaging, X-ray imaging, computed tomography, and positron emission tomography. Core provides imaging support services for investigators, including assistance in experimental design, conducting animal studies including anesthetization and imaging acquisition, and processing and interpreting imaging data.

Proper citation: Louisiana State University in Shreveport Small Animal Imaging Core Facility (RRID:SCR_024777) Copy   

•   Source: SciCrunch Registry

https://www.lsuhs.edu/centers/cardiovascular-diseases-and-sciences/cobre/cobre-core-facilities

Facility includes Analytic Redox Biology and Molecular Signaling Sub-Cores. Provided services include measurements of reactive oxygen species, reactive nitrogen species, reactive sulfide species, protein, peptides, metabolites, and lipids in cell culture and tissue samples. High-performance liquid chromatography systems, coupled with UV-vis and fluorescence detectors to quantify cellular and mitochondrial superoxide production, hydrogen sulfide pools (free sulfide, sulfide bound to transitional metals, and sulfane sulfur), and thiols (glutathione, GSH/GSSG, cysteine, cystine, homocysteine, persulfides, and glutathionylation).Instruments include Sievers NO Analyzer (NOA 280i, GE), Agilent 8890 GC and 8335 sulfur chemiluminescence detector ,Thermo Scientific Orbitrap Exploris 480 and SCIEX Triple Quad 7500 mass spectrometer. Molecular Signaling Sub-Core offers services for molecular cloning and site-directed mutagenesis, design and production of vectors for CRISPR/Cas9 modification of vascular cells, services for endothelial, smooth muscle, and cardiac myocyte cell isolation, for generation of vascular cell lines, and for lentivirus production for transient or stable modification of cardiovascular cells, access to equipment and expertise for studying cellular effects of hypoxia/reoxygenation injury (Coy Hypoxic Chamber, CLARIOstar Spectrofluorometer), for automated capillary Western blot analysis (ProteinSimple Jess Simple Western), and for high-resolution fluo-respirometry to study mitochondrial function (Oroboros O2k modular system).

Proper citation: Louisiana State University in Shreveport Redox Molecular Signaling Core Facility (RRID:SCR_024778) Copy   

•   Source: SciCrunch Registry

https://github.com/kundajelab/tfmodisco

Software application as algorithm for identifying motifs from basepair-level importance scores computed on genomic sequence data.

Proper citation: TF-Modisco (RRID:SCR_024811) Copy   

•   Source: SciCrunch Registry

https://www.lsuhs.edu/centers/center-for-applied-immunology-and-pathological-processes/bioinformatics-modeling-core

Core supports data analysis, network modeling, and data science research. Provides training and education opportunities.

Proper citation: Louisiana State University in Shreveport CAIPP Bioinformatics and Modeling Core Facility (RRID:SCR_024779) Copy   

•   Source: SciCrunch Registry

https://github.com/autotubularity/autotube

Software that quantifies vascular morphometry parameters like area covered by vessels, vessel width, skeleton length and branching or crossing points of vascular networks in tissues and in vitro assays.

Proper citation: AutoTube (RRID:SCR_024815) Copy   

•   Source: SciCrunch Registry

https://hndlab.shinyapps.io/Nutil-To-Usable/

Web application to transform Nutil outputs and plots it on mouse anatomical heatmap.

Proper citation: Nutil To Useable (RRID:SCR_024753) Copy   

•   Source: SciCrunch Registry

https://github.com/PaulingLiu/scibet

Software tool as supervised cell type identifier that accurately predicts cell identity for newly sequenced single cells.

Proper citation: SciBet (RRID:SCR_024743) Copy   

•   Source: SciCrunch Registry

https://www.tidyverse.org/blog/2018/11/parsnip-0-0-1/

Software R package to create and manipulate functions commonly used during modeling e.g. fitting the model, making predictions, etc.

Proper citation: Parsnip (RRID:SCR_024744) Copy   

•   Source: SciCrunch Registry

http://crdd.osdd.net/raghava/ifnepitope/

Web server for predicting and designing interferon gamma inducing epitopes. Users are allowed to paste or upload file with multiple peptide sequences and each sequence would be predicted according to model selected. Used to predict IFN-gamma inducing peptide/epitope in set of peptides or peptide library.

Proper citation: IFNepitope (RRID:SCR_024745) Copy   

•   Source: SciCrunch Registry

https://webs.iiitd.edu.in/raghava/il10pred/

Web server to predict IL-10 inducing peptides, where users are allowed to paste or upload file with multiple peptide sequences and each sequence would be predicted according to model selected. Used to design, discover and mapping of peptides that may induce IL-10.

Proper citation: IL-10Pred (RRID:SCR_024746) Copy   

•   Source: SciCrunch Registry

https://snyder.ucalgary.ca/labs/live-cell-imaging/LCIoverview

Offers advanced imaging technology, as well as training and support personalized to their imaging goals and experience. Provides Technology access and training; Assisted imaging and coaching at every step of the imaging workflow, from sample preparation to data analysis; Pilot experiments and feasibility testing; Developing custom image analysis pipelines; Image analysis consultation and training; Developing and testing new instruments and devices; Full scientific and technological collaborations and partnerships; Offsite coaching, assistance and consulting ; Collaborative projects in academic, health and allied industrial sectors;

Proper citation: University of Calgary Live Cell Imaging Laboratory Core Facility (RRID:SCR_024748) Copy   

•   Source: SciCrunch Registry

https://www.medschool.umaryland.edu/cibr/core/tgl/

Core provides range of genomics technologies to support basic, translational, and clinical research.Services support basic research. Clinical assays offered are similar to those offered to support basic research, except that these assays are validated under CLIA, enabling them to be used in clinical decision making process in research protocols and for routine patient care.

Proper citation: University of Maryland School of Medicine Translational Genomics Laboratory Core Facility (RRID:SCR_024749) Copy   

•   Source: SciCrunch Registry

https://www.amnh.org/research/microscopy-and-imaging-facility

Shared instrumentation facility at the American Museum of Natural History with tools for X-ray tomography, electron microscopy, confocal microscopy, light microscopy and image analysis. Provides expert assistance in the use of all lab equipment.

Proper citation: American Museum of Natural History Microscopy and Imaging Core Facility (RRID:SCR_024760) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/mass-spectrometry-and-separations

Core is part of the University of Manchester Faculty of Science and Engineering. Facility offers support and services in chemistry, biology and materials. Mass spectrometers including Orbitraps, Ion Mobility, MALDI, DESI, hyphenated LC-MS and GC-MS apparatuses. Other instruments are HPLC systems, UHPLC systems and GC systems.

Proper citation: University of Manchester Mass Spectrometry and Separations Core Facility (RRID:SCR_024761) Copy   

•   Source: SciCrunch Registry

https://opencast.org/

Open source platform to support management of educational audio and video content. Institutions can use Opencast to produce lecture recordings, manage existing video, serve designated distribution channels, and provide user interfaces to engage students with educational videos.

Proper citation: Opencast (RRID:SCR_024764) Copy   

•   Source: SciCrunch Registry

https://genomics.ccr.cancer.gov/

Core provides access to genomic technologies and Next-Generation Sequencing. Provides DNA and RNA quality control services, user accessible instrumentation, training, consultation services, bioinformatics support, and secure data delivery management.

Proper citation: NCI Center for Cancer Research Genomics Core Facility (RRID:SCR_024754) Copy   

•   Source: SciCrunch Registry

https://jmorp.megabank.tohoku.ac.jp/

Japanese multi omics reference panel. Provides multidimensional approach to diversity of Japanese population. Public database for plasma metabolome and proteome analyses. Updated to metabolome, genome, transcriptome, metagenome, number of samples, analysis methods of each dataset, expanding links between each layer and links between hierarchies.

Proper citation: jMORP (RRID:SCR_024755) Copy   

•   Source: SciCrunch Registry

https://voxelmorph.net

Software tool for joint surface based registration and atlas construction of brain geometry and function.Cortical registration framework that jointly models mismatch between geometry and function while simultaneously learning unbiased population specific atlas.

Proper citation: JOSA (RRID:SCR_024756) Copy   

•   Source: SciCrunch Registry