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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Creative Biogene Mitochondrial Physiological and Pathological Modifications Service Resource Resource Report Resource Website |
Creative Biogene Mitochondrial Physiological and Pathological Modifications Service Resource (RRID:SCR_022239) | service resource | Provides multi species mitochondrial epigenetic analysis and customizes appropriate research route. Providies services on epigenetic characteristics of mitochondria under different physiological and pathological conditions. | Creative Biogene, biomedical service, multi species mitochondrial epigenetic analysis, epigenetic characteristics, different physiological and pathological conditions | has parent organization: Creative Biogene | Restricted | SCR_022239 | Mitochondrial Physiological and Pathological Modifications | 2026-09-05 06:30:12 | 0 | |||||||||
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DrivAER Resource Report Resource Website 1+ mentions |
DrivAER (RRID:SCR_019076) | data analysis software, data processing software, software application, software resource | Software tool as method for identification of driving transcriptional programs based on AutoEncoder derived Relevance scores. Infers relevance scores for transcriptional programs with respect to specified outcomes of interest in single-cell RNA sequencing data, such as psuedotemporal ordering or disease status.Used for manifold interpretation in scRNA-seq data. | Manifold interpretation, scRNAseq data, relevance scores infering, transcriptional program, psuedotemporal ordering, disease status, data, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:drivaer | https://bio.tools/drivaer | SCR_019076 | Driving transcriptional programs using AutoEncoder based Relevance scores | 2026-09-05 06:30:10 | 1 | |||||||
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STENCIL Resource Report Resource Website 1+ mentions |
STENCIL (RRID:SCR_021878) | data processing software, data visualization software, software application, software resource | Web engine for visualizing and sharing life science datasets.Designed to organize, visualize, and enable sharing of interactive genomic data visualizations. Provides ability to inspect and interpret sequencing data, without requiring programming expertise. | Visualizing genomic data, sharing genomic data, interactive genomic data visualizations, interpret sequencing data | NIEHS ES013768; NIGMS GM125722 |
DOI:10.1101/2021.06.04.447108 | Free, Available for download, Freely available | SCR_021878 | 2026-09-05 06:30:11 | 4 | |||||||||
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IMGT HighV-QUEST Resource Report Resource Website 10+ mentions |
IMGT HighV-QUEST (RRID:SCR_018196) | alignment software, analysis service resource, data or information resource, data processing software, image analysis software, portal, production service resource, service resource, software application, software resource | Next generation B and T cell sequence alignment and characterization online surface by IMGT. Web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing. | Next generation sequencing, B cell, T cell, sequence alignment, immunoglobulin, antibody, T cell receptor, analysis, sequence, bio.tools |
is listed by: bio.tools is listed by: Debian |
CNRS ; GENCI ; MESR ; NHMRC ; Université Montpellier 2 ; France |
PMID:22647994 PMID:23995877 PMID:22665256 |
Restricted | biotools:IMGt_HighV-QUESt | https://bio.tools/IMGT_HighV-QUEST | SCR_018196 | IMGT/HighV QUEST, IMGT/HighV-QUEST, IMGT web portal | 2026-09-05 06:30:09 | 15 | |||||
|
Genomic Association Tester Resource Report Resource Website 10+ mentions |
Genomic Association Tester (RRID:SCR_020949) | GAT | data analysis software, data processing software, simulation software, software application, software resource | Software tool as simulation framework for testing association of genomic intervals. Used for estimating significance of overlap between multiple sets of genomic intervals. Estimates statistical significance based on simulation and controls for multiple tests using false discovery rate. | Genomic intervals, genomic intervals association testing, overlap significance estimation, genomic intervals sets, segment length distribution, chromosomal location, isochores | UK Medical Research Council | PMID:23782611 | Free, Available for download, Freely available | https://github.com/AndreasHeger/gat | http://code.google.com/p/genomic-association-tester | SCR_020949 | 2026-09-05 06:30:10 | 31 | ||||||
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PM4NGS Resource Report Resource Website 1+ mentions |
PM4NGS (RRID:SCR_019164) | data analysis software, data management software, data processing software, software application, software resource, software toolkit, workflow software | Software tool to generate standard organizational structure for Next Generation Sequencing data analysis. Includes directory structure for project, several Jupyter notebooks for data management and CWL workflows for pipeline execution. | NGS workflow, standard organizational structure generation, Next Generation Sequencing data, NGS data analysis, NGS data analysis workflow, data integration, Jupyter notebook, CWL format, bio.tools |
is listed by: bio.tools is listed by: Debian |
Intramural Research Program of the National Library of Medicine NIH | DOI:10.7490/f1000research.1117155.1 | Free, Freely available | biotools:pm4ngs | https://bio.tools/pm4ngs | SCR_019164 | Project Manager for Next Generation Sequencing | 2026-09-05 06:30:10 | 1 | |||||
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Panaroo Resource Report Resource Website 10+ mentions |
Panaroo (RRID:SCR_021090) | data analysis software, data processing software, software application, software resource | Software pipeline for pangenome investigation. Shares information between genomes to correct errors. Can call large structural variants.Fast and scalable to over 10k bacterial genomes. | pangenome investigation, correct errors, genomes, large structural variants, bacterial genomes | Free, Available for download, Freely available | https://gtonkinhill.github.io/panaroo/#/gettingstarted/quickstart | SCR_021090 | Bacterial Pangenome Analysis Pipeline | 2026-09-05 06:30:10 | 32 | |||||||||
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Creative Peptides: Formulation Development Service Resource Resource Report Resource Website |
Creative Peptides: Formulation Development Service Resource (RRID:SCR_022223) | instrument resource | Service to determine optimal dosage form, composition and manufacturing route for pharmaceutical products. | Creative Peptides, biomedical resource, optimal dosage form, pharmaceutical products | has parent organization: Creative Peptides | Restricted | SCR_022223 | Formulation Development | 2026-09-05 06:30:11 | 0 | |||||||||
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Creative Peptides: Peptide Lead Optimization Service Resource Resource Report Resource Website |
Creative Peptides: Peptide Lead Optimization Service Resource (RRID:SCR_022222) | instrument resource | Provides optimized one stop solution for peptide lead drugs. Used to improve upon lead molecule that demonstrates activity at target of interest by optimizing its potency or selectivity at target and its absorption, distribution, metabolism and elimination properties. | Creative Peptides, biomedical service, peptide lead drugs, lead molecule improvement, optimizing potency, optimizing selectivity at target | has parent organization: Creative Peptides | Restricted | SCR_022222 | Peptide Lead Optimization | 2026-09-05 06:30:11 | 0 | |||||||||
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Creative Peptides Peptide Drug Bioconjugations Service Resource Resource Report Resource Website |
Creative Peptides Peptide Drug Bioconjugations Service Resource (RRID:SCR_022221) | service resource | Custom peptide synthesis, modification, and conjugation services involve chemical modification of peptide at highly specific sites. This allows for attachment of drugs or bioactive molecules though variety of coupling techniques. | Creative Peptides, conjugation services, peptide, drugs or bioactive molecules attachment, biomedical service | has parent organization: Creative Peptides | Restricted | SCR_022221 | Peptide Drug Bioconjugations | 2026-09-05 06:30:11 | 0 | |||||||||
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Tandem Repeats Finder Resource Report Resource Website 100+ mentions |
Tandem Repeats Finder (RRID:SCR_022065) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tool to locate and display tandem repeats in DNA sequences. Used to analyze DNA sequences. | locate and display tandem repeats, analyze DNA sequences, tandem repeat, DNA sequence | PMID:9862982 | Free, Available for download, Freely available | SCR_022065 | 2026-09-05 06:30:11 | 443 | ||||||||||
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Brain Cell Methylation Viewer Resource Report Resource Website 1+ mentions |
Brain Cell Methylation Viewer (RRID:SCR_020954) | mC Viewer | analysis service resource, data access protocol, data or information resource, production service resource, service resource, software resource, web service | Viewer for DNA Methylation Atlas of Mouse Brain at Single Cell Resolution. Browser to interactively explore single cell methylome dataset including exploration of methylation diversity of one gene at single-cell or cell-type level, exploration of cell type composition of adult mouse brain dissection regions and anatomical structures, explorartion of spatial distribution and methylation signature genes of one cell type. | BRAIN Initiative Cell Census Network, mouse brain, cell types, epigenomes, single cell exploration, methylome dataset | has parent organization: Salk Institute for Biological Studies | DOI:10.1101/2020.04.30.069377 | Free, Freely available | SCR_020954 | Neomorph: Brain Cell Methylation Viewer | 2026-09-05 06:30:10 | 2 | |||||||
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Creative Peptides Total Peptide Library Construction Service Resource Resource Report Resource Website |
Creative Peptides Total Peptide Library Construction Service Resource (RRID:SCR_022219) | service resource | Service uses bioinformatics methods to compress peptide information, which can integrate information of multiple peptide into one peptide. Provides collection of small peptide of specific length and different sequences, which includes permutation and combination of various amino acid sequences in short peptide of this length.Total peptide library for new drug research and development. | Creative Peptides, biomedical service, peptide information, amino acid sequences, short peptide, peptide library | has parent organization: Creative Peptides | Restricted | SCR_022219 | Total Peptide Library Construction Technology | 2026-09-05 06:30:11 | 0 | |||||||||
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Waters: SQD2 LC/MS system Resource Report Resource Website 10+ mentions |
Waters: SQD2 LC/MS system (RRID:SCR_022217) | instrument resource | System includes SQD2 as single quadrupole MS with Waters H-Class Acquity UPLC, operated as open access platform for trained users. SQ Detector2 is single quadrupole mass detector for chromatography compatible with range of chromatography platforms and ionization sources. | SQ Detector2, instrument, equipment, USEDit, single quadrupole MS, mass spectrometer, liquid chromatography, Waters H-Class Acquity UPLC, chromatography platform, chromatography quadrupole mass detector |
uses: Waters SQ Detector 2 Mass Spectrometer is used by: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility |
SCR_022217 | Stanford Waters SQD2 LC/MS system | 2026-09-05 06:30:11 | 12 | ||||||||||
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CSpritz Resource Report Resource Website 1+ mentions |
CSpritz (RRID:SCR_021884) | data access protocol, software resource, web service | Web tool for prediction of intrinsic protein disorder segments with annotation for homology, secondary structure and linear motifs. | Intrinsic protein disorder segments prediction, homology, secondary structure, linear motifs, annotation | Italian Ministry of Education ; University of Padova |
DOI:10.1093/nar/gkr411 | Free, Freely available | SCR_021884 | 2026-09-05 06:30:11 | 2 | |||||||||
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SIGNOR Resource Report Resource Website 50+ mentions |
SIGNOR (RRID:SCR_018485) | data or information resource, data repository, database, service resource, storage service resource | Software application to organize and store in structured format signaling information published in scientific literature. Information is stored as binary causative relationships between biological entities and can be represented graphically as activity flow. Each relationship is linked to literature reporting experimental evidence. Each node is annotated with chemical inhibitors that modulate its activity. Signaling information is mapped to human proteome. SIGNOR 2.0 stores manually annotated causal relationships between proteins and other biologically relevant entities including chemicals, phenotypes, complexes, etc with compliance to FAIR data principles. | Signal transduction data, signaling information, published data collection, activity flow, chemical inhibitor, human proteome, manually annotated data, protein, protein relationship, FAIR data, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: REDIportal |
ELIXIR-IIB ; EMBL-EBI ; Italian Association for Cancer Research ; Italian Node of the European ELIXIR infrastructure |
PMID:31665520 | Free, Available for download, Freely available | biotools:signor | https://bio.tools/signor | SCR_018485 | SIGnaling Network Open Resource, SIGNOR 2.0 | 2026-09-05 06:30:09 | 61 | |||||
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LabSolutions Resource Report Resource Website 50+ mentions |
LabSolutions (RRID:SCR_018241) | data analysis software, data processing software, software application, software resource | Software package for data analysis by Shimadzu Oceania. | Data analysis system, data analysis, Shimadzu Oceania | Restricted | SCR_018241 | LabSolutions Software | 2026-09-05 06:30:09 | 87 | ||||||||||
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Polysolver Resource Report Resource Website 10+ mentions |
Polysolver (RRID:SCR_022278) | data analysis software, data processing software, software application, software resource | Software tool for HLA typing based on whole exome sequencing data and infers alleles for three major MHC class I genes. Enables accurate inference of germline alleles of class I HLA-A, B and C genes and subsequent detection of mutations in these genes using inferred alleles as reference. | HLA typing, whole exome sequencing data, accurate inference of germline alleles, high precision HLA-typing, alleles of class I HLA-A, B and C genes, detection of mutations, inferred alleles | has parent organization: Broad Institute | AACR ; Blavatnik Family Foundation ; NCI 1R01CA155010; NHLBI 1RO1HL103532 |
PMID:26372948 | Free, Available for download, Freely available | SCR_022278 | POLYmorphic loci reSOLVER, POLYSOLVER | 2026-09-05 06:30:12 | 33 | |||||||
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Plant Cataloging Workflow Resource Report Resource Website 1+ mentions |
Plant Cataloging Workflow (RRID:SCR_022276) | data processing software, software application, software resource, workflow software | Software workflow for automatized spatio temporal plant positioning based on UAV images. | Cataloging, automatized spatio temporal plant positioning, UAV images | DOI:10.48550/arXiv.2201.02885 | Free, Available for download, Freely available | SCR_022276 | 2026-09-05 06:30:13 | 1 | ||||||||||
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University of Pennsylvania Perelman School of Medicine Tumor Tissue Biospecimen Bank Core Facility Resource Report Resource Website 1+ mentions |
University of Pennsylvania Perelman School of Medicine Tumor Tissue Biospecimen Bank Core Facility (RRID:SCR_022430) | TTAB | access service resource, biobank, core facility, material storage repository, service resource, storage service resource | Centralized biorepository of human biosamples. TTAB is responsible for the collection, processing, and storage of human blood, fluid, and tissue at the University of Pennsylvania Health System. TTAB has a collection bench within Surgical Pathology Suite at Hospital of University of Pennsylvania (HUP).� Our collection bench sits adjacent to frozen section teams managing clinical sample collection and allowing for tight integration of tissue sample collection with clinical pathology teams. | USEDit, ABRF, biorepository |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
ARBF_1435 | https://coremarketplace.org?citation=1&FacilityID=1435 | SCR_022430 | Tumor Tissue/Biospecimen Bank (TTAB), University of Pennsylvania Perelman School of Medicine Tumor Tissue/Biospecimen Bank (TTAB) | 2026-09-05 06:30:14 | 3 |
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