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https://www.library.upenn.edu/holman/bollinger-digital-fabrication

Provides fabrication services and consultations contributing to innovation in teaching, learning, research, and clinical care at the University of Pennsylvania.

Proper citation: University of Pennsylvania Bollinger Digital Fabrication Laboratory Core Facility (RRID:SCR_024735) Copy   

•   Source: SciCrunch Registry

https://med.stanford.edu/cemc

Core enables macromolecular structure determination, mechanistic investigations, and drug discovery through cryo-electron microscopy. Services include High-resolution data collection for single-particle analysis (SPA), soft-matter research, and tomography; High-throughput cryo sample screening and collection of diagnostic small data sets; Screening negatively stained samples; Training and various levels of assistance for diverse experimental designs, including sample preparation, negative stain screening, and equipment operation; Full-service option for screening and data collection.

Proper citation: Stanford Cryo-Electron Microscopy Center Core Facility (RRID:SCR_024736) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/org.Hs.eg.db/

Software R package as object for simple mapping of Entrez Gene identifiers https://www.ncbi.nlm.nih.gov/ entrez/query.fcgi?db=gene to all possible GenBank accession numbers.

Proper citation: org.Hs.eg.db (RRID:SCR_024739) Copy   

•   Source: SciCrunch Registry

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MCFLIRT

Software intra-modal motion correction tool designed for use on fMRI time series for linear (affine) inter- and inter-modal brain image registration.

Proper citation: MCFLIRT (RRID:SCR_024792) Copy   

•   Source: SciCrunch Registry

https://med.unr.edu/research/core-facilities-centers/high-spatial-temporal-resolution-imaging-core

Core provides high spatial and temporal resolution imaging methodologies and instrumentation for studying cellular structure, signaling pathways, and function in health and disease. Offers education, training and expertise in advising investigators in the use of the new technologies.

Proper citation: University of Nevada Reno School of Medicine High Spatial and Temporal Resolution Imaging Core Facility (RRID:SCR_024793) Copy   

•   Source: SciCrunch Registry

https://www.une.edu/

Private research university in Maine with campuses in Portland and Biddeford, as well as study abroad campus in Tangier, Morocco.

Proper citation: University of New England; Biddeford; USA (RRID:SCR_024794) Copy   

•   Source: SciCrunch Registry

https://animalmodels.biotech.wisc.edu/

Core provides support for generation of novel animals including mice, rats and swine models using CRISPR or transgenic technology, cryopreservation, rederivation, and IVF recovery of rodent animal models.

Proper citation: University of Wisconsin Madison Biotechnology Center Animal Models Core Facility (RRID:SCR_024797) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/corrosion-amp-materials-for-demanding-environments

Core includes facilities and techniques, supporting exploration of this unique research space. Provides expertise and services for advanced materials and interdisciplinary research activity.

Proper citation: University of Manchester Corrosion and Materials for Demanding Environments Core Facility (RRID:SCR_024787) Copy   

•   Source: SciCrunch Registry

https://rpy2.github.io/

Software interface to use R from Python.

Proper citation: rpy2 (RRID:SCR_024701) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/surface-characterisation

Core includes range of surface analysis techniques and supportive instruments across three research institutes: Henry Royce Institute, Photon Science Institute, and National Graphene Institute.

Proper citation: University of Manchester Surface Characterisation Core Facility (RRID:SCR_024789) Copy   

•   Source: SciCrunch Registry

https://github.com/holab-hku/Vulture

Software scalable cloud based pipeline that performs microbial calling for single cell RNA sequencing data, enabling meta analysis of the single cell host microbial studies from AWS Open Data and other public domain.

Proper citation: Vulture (RRID:SCR_024720) Copy   

•   Source: SciCrunch Registry

https://github.com/liufan-creat/bulkGAN

Software tool for scRNA and spatial transcriptomics.Used to generate RNA data close to real bulk RNA-seq with constraints of scRNA-seq data, based on keras and tensflow framework.

Proper citation: bulkGAN (RRID:SCR_024798) Copy   

•   Source: SciCrunch Registry

https://biotech.unl.edu/flow-cytometry#tab1

Provides flow cytometry services. Instruments include Beckman Coulter CytoFLEX SRT sorter and CytoFLEX LX, as well as NanoAnalyzer from NanoFCM. Facility staff are able to assist with everything from experimental design, instrument training, sample collection, and data analysis.

Proper citation: University of Nebraska Lincoln Flow Cytometry Core Facility (RRID:SCR_024711) Copy   

•   Source: SciCrunch Registry

http://www.calculix.de/

Software finite element analysis package. Used to solve field problems.

Proper citation: CalculiX (RRID:SCR_024771) Copy   

•   Source: SciCrunch Registry

https://github.com/mcelotto/Feature_Info_Transfer

Software application as MATLAB scripts to compute measures of Feature-specific Information Transfer (FIT) and conditional FIT (cFIT). FIT quantifies direction and magnitude of information flow about specific feature S (such as feature of sensory stimulus) between simultaneously recorded brain regions X and Y. cFIT quantifies amount of directed feature information transmitted between regions X and Y that cannot be potentially routed through region Z.

Proper citation: Feature-specific Information Transfer scripts (RRID:SCR_024772) Copy   

•   Source: SciCrunch Registry

https://github.com/mcelotto/LemkeCelottoEtAl_codes_repo

Software code package associated to the paper: Lemke et al. Information flow between motor cortex and striatum reverses during skill learning. 2023. Quantifies information theoretic quantities used in the associated study.

Proper citation: LemkeCelottoEtAl_codes_repo (RRID:SCR_024773) Copy   

•   Source: SciCrunch Registry

http://www.bioinformatics.com.cn/

Web service for online data drawing and analysis, personalized data analysis, scientific research mapping, online page/database development and hosting. Used for high throughput sequencing data analysis including eccDNA-seq, MeRIP-seq, circRNA-seq, miRNA-seq, mRNA-seq, LncRNA-seq, piRNA-seq, ChIP-seq, etc.

Proper citation: bioinformatics platform (RRID:SCR_024774) Copy   

•   Source: SciCrunch Registry

https://research.lsuhs.edu/cores/research-core-facilities

Core provides access to research services, educational and training opportunities, and technologies including cellular metabolism, flow cytometry, fluorescence, confocal, super resolution confocal microscopy, next generation sequencing, and real-time PCR. Provides assistance with all aspects of these technologies, including experimental design, protocol optimization, instrument operation, and data analysis.

Proper citation: Louisiana State University in Shreveport Research Core Facility (RRID:SCR_024775) Copy   

•   Source: SciCrunch Registry

https://resources.aertslab.org/cistarget/

Web application to download database for motif enrichment, motif annotations,cluster-buster implementation, precomputed regions for creating gene-based databases and to download lists of transcription factors for human, mouse and fly, chip-seq tracks annotations.

Proper citation: cisTarget (RRID:SCR_024808) Copy   

•   Source: SciCrunch Registry

https://github.com/xjtu-omics/msisensor-pro

Software tool for microsatellite instability detection using high throughput sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region sequencing data as input. Introduces multinomial distribution model to quantify polymerase slippages for each tumor sample and discriminative sites selection method to enable MSI detection without matched normal samples.

Proper citation: MSIsensor-pro (RRID:SCR_024765) Copy   

•   Source: SciCrunch Registry