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https://med.unr.edu/research/core-facilities-centers/high-spatial-temporal-resolution-imaging-core

Core provides high spatial and temporal resolution imaging methodologies and instrumentation for studying cellular structure, signaling pathways, and function in health and disease. Offers education, training and expertise in advising investigators in the use of the new technologies.

Proper citation: University of Nevada Reno School of Medicine High Spatial and Temporal Resolution Imaging Core Facility (RRID:SCR_024793) Copy   

•   Source: SciCrunch Registry

https://www.une.edu/

Private research university in Maine with campuses in Portland and Biddeford, as well as study abroad campus in Tangier, Morocco.

Proper citation: University of New England; Biddeford; USA (RRID:SCR_024794) Copy   

•   Source: SciCrunch Registry

https://animalmodels.biotech.wisc.edu/

Core provides support for generation of novel animals including mice, rats and swine models using CRISPR or transgenic technology, cryopreservation, rederivation, and IVF recovery of rodent animal models.

Proper citation: University of Wisconsin Madison Biotechnology Center Animal Models Core Facility (RRID:SCR_024797) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/corrosion-amp-materials-for-demanding-environments

Core includes facilities and techniques, supporting exploration of this unique research space. Provides expertise and services for advanced materials and interdisciplinary research activity.

Proper citation: University of Manchester Corrosion and Materials for Demanding Environments Core Facility (RRID:SCR_024787) Copy   

•   Source: SciCrunch Registry

https://rpy2.github.io/

Software interface to use R from Python.

Proper citation: rpy2 (RRID:SCR_024701) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/surface-characterisation

Core includes range of surface analysis techniques and supportive instruments across three research institutes: Henry Royce Institute, Photon Science Institute, and National Graphene Institute.

Proper citation: University of Manchester Surface Characterisation Core Facility (RRID:SCR_024789) Copy   

•   Source: SciCrunch Registry

https://github.com/holab-hku/Vulture

Software scalable cloud based pipeline that performs microbial calling for single cell RNA sequencing data, enabling meta analysis of the single cell host microbial studies from AWS Open Data and other public domain.

Proper citation: Vulture (RRID:SCR_024720) Copy   

•   Source: SciCrunch Registry

https://github.com/liufan-creat/bulkGAN

Software tool for scRNA and spatial transcriptomics.Used to generate RNA data close to real bulk RNA-seq with constraints of scRNA-seq data, based on keras and tensflow framework.

Proper citation: bulkGAN (RRID:SCR_024798) Copy   

•   Source: SciCrunch Registry

https://biotech.unl.edu/flow-cytometry#tab1

Provides flow cytometry services. Instruments include Beckman Coulter CytoFLEX SRT sorter and CytoFLEX LX, as well as NanoAnalyzer from NanoFCM. Facility staff are able to assist with everything from experimental design, instrument training, sample collection, and data analysis.

Proper citation: University of Nebraska Lincoln Flow Cytometry Core Facility (RRID:SCR_024711) Copy   

•   Source: SciCrunch Registry

http://www.calculix.de/

Software finite element analysis package. Used to solve field problems.

Proper citation: CalculiX (RRID:SCR_024771) Copy   

•   Source: SciCrunch Registry

https://github.com/mcelotto/Feature_Info_Transfer

Software application as MATLAB scripts to compute measures of Feature-specific Information Transfer (FIT) and conditional FIT (cFIT). FIT quantifies direction and magnitude of information flow about specific feature S (such as feature of sensory stimulus) between simultaneously recorded brain regions X and Y. cFIT quantifies amount of directed feature information transmitted between regions X and Y that cannot be potentially routed through region Z.

Proper citation: Feature-specific Information Transfer scripts (RRID:SCR_024772) Copy   

•   Source: SciCrunch Registry

https://github.com/mcelotto/LemkeCelottoEtAl_codes_repo

Software code package associated to the paper: Lemke et al. Information flow between motor cortex and striatum reverses during skill learning. 2023. Quantifies information theoretic quantities used in the associated study.

Proper citation: LemkeCelottoEtAl_codes_repo (RRID:SCR_024773) Copy   

•   Source: SciCrunch Registry

http://www.bioinformatics.com.cn/

Web service for online data drawing and analysis, personalized data analysis, scientific research mapping, online page/database development and hosting. Used for high throughput sequencing data analysis including eccDNA-seq, MeRIP-seq, circRNA-seq, miRNA-seq, mRNA-seq, LncRNA-seq, piRNA-seq, ChIP-seq, etc.

Proper citation: bioinformatics platform (RRID:SCR_024774) Copy   

•   Source: SciCrunch Registry

https://research.lsuhs.edu/cores/research-core-facilities

Core provides access to research services, educational and training opportunities, and technologies including cellular metabolism, flow cytometry, fluorescence, confocal, super resolution confocal microscopy, next generation sequencing, and real-time PCR. Provides assistance with all aspects of these technologies, including experimental design, protocol optimization, instrument operation, and data analysis.

Proper citation: Louisiana State University in Shreveport Research Core Facility (RRID:SCR_024775) Copy   

•   Source: SciCrunch Registry

https://resources.aertslab.org/cistarget/

Web application to download database for motif enrichment, motif annotations,cluster-buster implementation, precomputed regions for creating gene-based databases and to download lists of transcription factors for human, mouse and fly, chip-seq tracks annotations.

Proper citation: cisTarget (RRID:SCR_024808) Copy   

•   Source: SciCrunch Registry

https://github.com/xjtu-omics/msisensor-pro

Software tool for microsatellite instability detection using high throughput sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region sequencing data as input. Introduces multinomial distribution model to quantify polymerase slippages for each tumor sample and discriminative sites selection method to enable MSI detection without matched normal samples.

Proper citation: MSIsensor-pro (RRID:SCR_024765) Copy   

•   Source: SciCrunch Registry

https://github.com/broadinstitute/ichorCNA

Software tool that quantifies tumor content in cfDNA from 0.1× coverage whole-genome sequencing data without prior knowledge of tumor mutations. Used to simultaneously segment genome, predict large scale copy number alterations, and estimate tumor fraction of ultra low pass whole genome sequencing sample.

Proper citation: ichorCNA (RRID:SCR_024768) Copy   

•   Source: SciCrunch Registry

https://research.manchester.ac.uk/en/equipments/design-fabrication-and-testing

Core supports areas of research from Heavy Structures and Concrete design, fabrication and testing to Non-Destructive Testing, development and construction of novel fibre, polymers and composite materials.

Proper citation: University of Manchester Design, Fabrication and Testing Core Facility (RRID:SCR_024801) Copy   

•   Source: SciCrunch Registry

https://github.com/hetio/xswap

Software Python library (C++ backend) for degree preserving network randomization.

Proper citation: XSwap (RRID:SCR_024802) Copy   

•   Source: SciCrunch Registry

https://github.com/STOmics/SGAE

Software graph neural network based tool for spatial domain deciphering. Used for deciphering spatial domains from spatially resolved transcriptomics.

Proper citation: SGAE (RRID:SCR_024803) Copy   

•   Source: SciCrunch Registry