Tools   Select Another Resource Report Type

https://edspace.american.edu/openbehavior/project/eco-hab/

Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists.

Proper citation: Eco-HAB (RRID:SCR_021588) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/oculomatic-eye-tracking/

Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates.

Proper citation: Oculomatic Eye Tracking project (RRID:SCR_021465) Copy   

•   Source: SciCrunch Registry

https://github.com/scimemia/M-Track

Software toolbox for automated detection of forepaw trajectories in mice.Open source code to simultaneously track movement of individual paws during spontaneous grooming episodes and walking in multiple freely behaving mice/rats.

Proper citation: M-Track (RRID:SCR_021508) Copy   

•   Source: SciCrunch Registry

http://nf.synapse.org

Portal created to help openly explore and share NF datasets, analysis tools, resources, and publications related to neurofibromatosis and schwannomatosis.Public data repository that stores and shares data generated by multiple collaborative research programs focused on neurofibromatosis diseases.

Proper citation: NF Data Portal (RRID:SCR_021683) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/moving-wall-box-mwb/

Portal provides Moving Wall Box system used to testing strategy task where mouse is repeatedly forced to jump over small ice by slowly moving walls whereby presence of animal is automatically sensed via balances and analyzed by microcontroller board which in turn controls movements of walls. Device provided by Max Planck Institute of Psychiatry scientist. Used for repeated assessment of fear coping strategies.

Proper citation: Moving Wall Box (RRID:SCR_021559) Copy   

•   Source: SciCrunch Registry

https://subcellular.humanbrainproject.eu/

Web interface for simulation of biological molecular networks. Web based environment for creation and simulation of reaction-diffusion models integrated with molecular repository. Allows to import, combine and simulate existing models expressed with BNGL and SBML languages. Application is integrated with number of solvers for reaction-diffusion systems of equations.

Proper citation: Subcellular App (RRID:SCR_018790) Copy   

•   Source: SciCrunch Registry

https://github.com/dfguan/purge_dups

Software tool to purge haplotigs and overlaps in assembly based on read depth.Used for haplotypic duplication identification. Designed to remove haplotigs and contig overlaps in a de novo assembly based on read depth.

Proper citation: purge dups (RRID:SCR_021173) Copy   

•   Source: SciCrunch Registry

https://www.nationalacademies.org/news/2020/03/standing-committee-on-emerging-infectious-diseases-provides-rapid-response-to-government-on-key-coronavirus-questions

Committee provides expert consultation on data elements and systems design for modeling and decision making for COVID-19 pandemic. Assembled at request of White House Office of Science and Technology Policy and Office of Assistant Secretary for Preparedness and Response in response to COVID-19 outbreak. Provides expert consultations on several topics, such as surface stability and incubation, social distancing, and crisis standards of care.

Proper citation: NASEM Standing Committee on Emerging Infectious Diseases and 21st Century Health Threats (RRID:SCR_018289) Copy   

•   Source: SciCrunch Registry

http://services.mbi.ucla.edu/anisoscale/

Web server to indicate severity of anisotropy in data set. Degree of anisotropy is indicated by anisotropic delta B statistic.

Proper citation: UCLA Diffraction Anisotropy Server (RRID:SCR_018722) Copy   

•   Source: SciCrunch Registry

https://pasquali-lab.gitlab.io/umi4cats/

Software R package for analyzing UMI-4C chromatin contact data. Used to analyze chromatin contact profiles obtained by UMI-4C.

Proper citation: UMI4Cats (RRID:SCR_021780) Copy   

•   Source: SciCrunch Registry

https://github.com/hahnlab/CAFExp

Software tool for computational analysis of gene family evolution. Used for statistical analysis of evolution gene family sizes. Models evolution of gene family sizes over phylogeny.

Proper citation: Computational Analysis of gene Family Evolution (RRID:SCR_018924) Copy   

•   Source: SciCrunch Registry

https://pna.creative-peptides.com/services/modification-by-c-replacement.html

PNA modification service provides replacement of backbone C.

Proper citation: Creative Peptides PNA Modification by C Replacement Service Resource (RRID:SCR_022230) Copy   

•   Source: SciCrunch Registry

http://mtshasta.phys.washington.edu/website/SuperSegger.php

Software package as automated MATLAB based trainable image cell segmentation, fluorescence quantification and analysis suite. Used for high throughput time lapse fluorescence microscopy of in vivo bacterial cells. Robust image segmentation, analysis and lineage tracking of bacterial cells.

Proper citation: SuperSegger (RRID:SCR_018532) Copy   

•   Source: SciCrunch Registry

https://pna.creative-peptides.com/services/n-c-terminal-modification.html

Service to modify monomer backbone, including chemically active sites at both ends. Monomer N-terminal and C-terminal modification.

Proper citation: Creative Peptides PNA N/C Terminal Modification Service Resource (RRID:SCR_022229) Copy   

•   Source: SciCrunch Registry

https://github.com/sgoldenlab/simba

Open source software toolkit for computer classification of complex social behaviors in experimental animals.

Proper citation: Simple Behavior Analysis (RRID:SCR_021413) Copy   

•   Source: SciCrunch Registry

https://www.ncbi.nlm.nih.gov/labs/virus/vssi

Community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories. Integrative, value added resource designed to support retrieval, display and analysis of curated collection of virus sequences and large sequence datasets. Used to increase usability of data archived in GenBank and other NCBI repositories.

Proper citation: NCBI Virus (RRID:SCR_018253) Copy   

•   Source: SciCrunch Registry

https://www.microbialtec.com/pelodictyon-cultivation.html

Service for Pelodictyon cultivation.

Proper citation: Creative Biogene Pelodictyon Cultivation Service Resource (RRID:SCR_022244) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/biomarkers-and-therapeutic-targets.html

Creative Biogene service for discovery of disease specific proteins associated with mitochondrial epigenetic products, which can be used as molecular targets for new drug design and provide molecular markers for early diagnosis of diseases.

Proper citation: Creative Biogene Mitochondrial Biomarkers and Therapeutic Targets Service Resource (RRID:SCR_022240) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/alexmascension/triku

Software tool as feature selection method based on nearest neighbors for single-cell data.

Proper citation: triku (RRID:SCR_020977) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3doc/

Project related to animals learned perform action in order to achieve reward. Fully 3D printable chamber able to perform operant conditioning using off-the-shelf, low-cost optical and electronic components, that can be reproduced rigorously in any laboratory equipped with 3D printer.

Proper citation: 3DOC (RRID:SCR_021547) Copy   

•   Source: SciCrunch Registry