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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://med.stanford.edu/spectrum/ctsa-cores-and-programs/research-methods-core/berd.html
Core provides CTR investigators with support for study design development, data curation and management, and analytic strategies. Provides infrastructure through Data Studio; Clinical Office Hours; Data Science Navigation.
Proper citation: Stanford Spectrum Biostatistics Epidemiology and Research Design Core Facility (RRID:SCR_023695) Copy
Imaging and cytometry facility of the Montpellier area.
Proper citation: Montpellier Imaging Resources Core Facility (RRID:SCR_023727) Copy
https://github.com/DeNardoLab/BehaviorDEPOT
Software tool for automated behavioral detection based on markerless pose tracking. Behavioral analysis tool to first compile and clean point-tracking output from DeepLabCut, and then classify behavioral epochs using custom behavior classifiers. Used to detect frame by frame behavior from video time series and can analyze results of common experimental assays, including fear conditioning, decision-making in T-maze, open field, elevated plus maze, and novel object exploration. Calculates kinematic and postural statistics from keypoint tracking data from pose estimation software outputs.
Proper citation: BehaviorDEPOT (RRID:SCR_023602) Copy
Provides in vivo animal imaging and biospecimen imaging. In Vivo Preclinical Imaging services.
Proper citation: University of California Davis Center for Molecular and Genomic Imaging Core Facility (RRID:SCR_023446) Copy
Provides access to NMR instrumentation for spectroscopy and imaging. Spectrometers are multinuclear and variety of liquids, solids, surface, and imaging probes are available for use. Individual training, safety and operational training can be requested
Proper citation: University of California Davis Nuclear Magnetic Resonance Core Facility (RRID:SCR_023445) Copy
http://researchservices.pitt.edu/facilities/machine-shop
Core specializes in mechanical design, fabrication, and repair of research equipment and instrumentation.
Proper citation: University of Pittsburgh Dietrich School Machine Shop Core Facility (RRID:SCR_023720) Copy
https://www.uniklinik-freiburg.de/medizin1/forschung/lighthouse-core-facility.html
Core specializes in areas of flow cytometry and cell sorting; light microscopy including confocal, widefield fluorescence, high content screening, lightsheet, slide scanning, highly multiplexed microscopy; and digital PCR / QPCR. It is located at University of Freiburg Medical Center and hosts institutions including Dept. of Medicine I, Center for Chronic Immunodeficiency (CCI), CCCF / DKTK, and Medical Faculty of University of Freiburg.
Proper citation: University of Freiburg Medical Center Lighthouse Core Facility (RRID:SCR_023785) Copy
https://med.stanford.edu/vsc.html
Provides medical care, in vivo research support, and disease surveillance to laboratory animals at Stanford University . Our board certified and board eligible veterinarians offer consultation in appropriate animal modeling, animal care techniques, experimental methodology, anesthetic techniques, surgical techniques, pain management, humane euthanasia techniques, and animal use (APLAC) protocol consultation. AALAS certified veterinary technicians are available to provide technical support including dosing, biosampling, conducting anesthesia and post-operative care, for example.
Proper citation: Stanford University School of Medicine Veterinary Service Center Core Facility (RRID:SCR_023388) Copy
https://github.com/VioletteChiara/AnimalTA
Software video tracking tool for tracking and analysing animal movement in different environments.
Proper citation: AnimalTA (RRID:SCR_023784) Copy
https://www.cores.emory.edu/fcc/
Core provides sorting, sample analysis and analyzer training.Provides quantitative flow cytometric analyses on samples including blood, bone marrow, spleen, serum, plasma, solid tissues, cell extracts to support both clinical and basic research efforts. These analyses will provide insight on cell function and precursors whose abundance can be monitored as biomarkers to predict and follow progression of a wide range of diseases, such as H1N1, yellow fever, dengue, neurodegenerative diseases, stem cell studies.Provides consultations, expert training, and support for all systems and provides access to equipment.
Proper citation: Emory University School of Medicine Flow Cytometry Core Facility (RRID:SCR_023536) Copy
https://www.cores.emory.edu/tmf/index.html
Provides equipment and expertise for generating and characterizing genetically altered mouse models. Please contact us so that we can discuss your experimental needs.
Proper citation: Emory University Mouse Transgenic and Gene Targeting Core Facility (RRID:SCR_023535) Copy
Provides services with computing and data information for research proposals, data storage platforms,consultation,computational platforms and resources.Some services relate directly to physical hardware, including hosting and system administration. Hosting largely takes place at Stanford Research Computing Facility data center designed specifically to host high density, power consumptive computing equipment. SRCF is intended to meet research server hosting needs of campus for years to come.
Proper citation: Stanford University Research Computing (RRID:SCR_023413) Copy
https://www.cores.emory.edu/ici/index.html
Provides light microscopy. Offers expertise in imaging for experimental needs.
Proper citation: Emory University Emory Integrated Cellular Imaging Core Facility (RRID:SCR_023534) Copy
https://physics.stanford.edu/resources/machine-shop
Provides services for all departments on campus, including library of materials and parts suppliers, arranging for off-campus services such as plating and specialized machining services,help with laboratory and research apparatus and repair of existing equipment, designs from sketches to final assembly by mechanical means (welding, brazing or soldering),computer numerically controlled mill and lathe, electro discharge machining.
Proper citation: Stanford University Physics Machine Shop Core Facility (RRID:SCR_023412) Copy
https://winshipcancer.emory.edu/research/shared-resources/emory-cellular-immunotherapy-core.html
Clinical cell manufacturing facility that prepares cell and immunotherapy products under current Good Manufacturing Practices for development of investigational new drugs and diagnostics methods.Provides GMP compliant cell manufacturing and/or consultation for translational of Emory based or external research collaborations into early phase clinical trials.
Proper citation: Emory University Emory Cellular and Immunotherapy Core Facility (RRID:SCR_023533) Copy
Offers to run high-throughput compound, RNAi, and deletion library based screens for purpose of network analysis, drug and/or target discovery. Offers assistance to develop assay, carryout screen and/or analyze data. Equipment is also available for general (low-throughput) use. Helps with developing custom pipeline. Biomek FX liquid handling workstation with integrated Liconic shaker incubator (temperature, humidity, and CO2 controlled) can be used to setup and grow most cell types in 96 well plates. This robot is equipped to add RNAi constructs, drugs or other stimuli to each plate. Biomek FX can also be used to perform high-throughput biochemical assays. Cell based assays can be carried out using either Operetta CLS high-content analysis system or CLARIOstar plus. Both instruments have powerful, but easy to use software for data analysis.
Proper citation: University of Arizona Functional Genomics Core Facility (RRID:SCR_023433) Copy
https://github.com/DigitalHealthcareLab/22ActionRecognitionTool
Software tool for multi view child motor development dataset for AI-driven assessment of child development project.
Proper citation: 22ActionRecognitionTool (RRID:SCR_023552) Copy
https://med.miami.edu/research/cores/biomarker-and-immunoassay-laboratory
Provides biomarker testing for human clinilcal research studies across multiple disciplines.Provides expertise with chemistry, special chemistry, radioimmunoassay, nephelometric and ELISA and multiplexing assay methods utilizing automated and manual procedures. Laboratory has Clinical Laboratory Improvement Act certification and follows guidelines established by CLIA for quality control and proficiency testing to ensure results. Core coordinates proper pre-analytical sample collection and processing procedures with project leaders; performs biochemical assays on samples submitted to the laboratory by investigators in manner that assures strict quality control both within and between assay runs; reports results to project staff in timely fashion; makes available expertise and technical assistance for establishing and validating new methodologies to support University of Miami investigators.
Proper citation: University of Miami Miller School of Medicine Biomarkers and Immunoassay Laboratory Core Facility (RRID:SCR_023705) Copy
https://github.com/fhcrc/seqmagick/
Software application to expose file format conversion in BioPython in convenient way. Imagemagick like frontend to Biopython SeqIO.
Proper citation: seqmagick (RRID:SCR_024331) Copy
https://rnainnovation.med.upenn.edu/scientific-groups/targeting-core/
Core to support advancement of RNA biotherapeutics via enabling swift and low failure solutions of targeting related aspects. Provides methodologies, equipment, reagents, expertise and support in identification of epitopes and ligands, molecular design and testing of targeting RNA to diverse multitudes of desirable addresses in the body.
Proper citation: University of Pennsylvania Institute for RNA Innovation Targeting Core Facility (RRID:SCR_024573) Copy
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