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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Quantifying Animal Movement from Pre-recorded Videos project Resource Report Resource Website |
Quantifying Animal Movement from Pre-recorded Videos project (RRID:SCR_021436) | STL | data or information resource, portal, project portal | Project related to visualizing and quantifying movement from pre-recorded videos. Provides software toolbox for visualizing and quantifying movement.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data. | Visualizing movement, quantifying movement, pre-recorded videos movement, summarizing animal movement data, single image, automate analysis, animal movement data, movement tracking, path analysis, video visualization, video summarization, image analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Quantifying Animal Movement from Pre-recorded Videos |
DOI:10.12688/f1000research.3-19.v1 | Free, Freely available | SCR_021436 | Quantifying Animal Movement from Pre-recorded Videos | 2026-09-03 05:00:39 | 0 | |||||||
|
mgatk Resource Report Resource Website 1+ mentions |
mgatk (RRID:SCR_021159) | data processing software, software application, software resource, software toolkit | Software python-based command line interface for processing .bam files with mitochondrial reads and generating high-quality heteroplasmy estimation from sequencing data. This package places a special emphasis on mitochondrial genotypes generated from single-cell genomics data, primarily mtscATAC-seq, but is generally applicable across other assays. | processing .bam files, mitochondrial reads, heteroplasmy estimation, sequencing data, mitochondrial genotypes, mtscATAC-seq | NCI F31 CA232670; NCI P01 CA206978; NCI R01 CA208756; NCI U10 CA180861; NHLBI R33 HL120791; NIDDK R01 DK103794 |
DOI:10.1038/s41587-020-0645-6 | Free, Available for download, Freely available | SCR_021159 | mitochondrial genome analysis toolkit | 2026-09-03 05:01:09 | 4 | ||||||||
|
Behavioral Observation Research Interactive Software project Resource Report Resource Website 1+ mentions |
Behavioral Observation Research Interactive Software project (RRID:SCR_021434) | BORIS | data or information resource, portal, project portal | Project related to computer based review of previously recorded videos or live observations. Related to study of animal and human behavior. Provides open source, multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations.Developed by scientists from University of Turin. | Specific coding environment, computer based review, previously recorded videos review, live observations review, OpenBehavior |
is listed by: OpenBehavior is related to: Behavioral Observation Research Interactive Software has parent organization: University of Turin;Turin;Italy |
DOI:10.1111/2041-210x.12584 | Free, Freely available | SCR_021434 | Behavioral Observation Research Interactive Software | 2026-09-03 05:00:28 | 9 | |||||||
|
MRI Compatible and Customizable Microdrive Design for Neuroscience Research Resource Report Resource Website 1+ mentions |
MRI Compatible and Customizable Microdrive Design for Neuroscience Research (RRID:SCR_019247) | data or information resource, portal, project portal | Open source designs for customizable, MRI compatible microdrive capable of positioning probes including stimulating electrodes, recording electrodes, drug cannulae, or optogenetic fibers within brain. Design integrates cranial implant, penetration grid for guiding probes, and microdrive body assembly with actuators. Used by neuroscience community related to electrical microstimulation, neuronal recording, and local drug delivery. | CAD files, microdrive, MRI compatible microdrive, customizable microdrive, 3D printable microdrive, neuroscience research | DOI:10.1523/ENEURO.0495-20.2021 | Free, Freely available | SCR_019247 | 2026-09-03 05:00:10 | 1 | ||||||||||
|
Smart-seq2 Single Nucleus Multi Sample Pipeline Resource Report Resource Website 1+ mentions |
Smart-seq2 Single Nucleus Multi Sample Pipeline (RRID:SCR_021312) | data processing software, software application, software resource, software toolkit | Software pipeline for single-nucleus RNAseq data generated by Smart-seq2 assays.Used to simultaneously process multiple libraries of single nuclei Smart-seq2 and Smart-seq4 data. For each library (nucleus), the pipeline trims paired FASTQ files, aligns trimmed reads to the genome, counts intronic and exonic reads, and calculates quality control metrics. Counts and metrics for all libraries are combined into merged Loom formatted count matrix. | snRNAseq data, Smart-seq2 assays, single nucleus, multi sample, WARP repository |
is used by: BICCN has parent organization: Broad Institute has parent organization: Allen Institute has parent organization: University of California at San Diego; California; USA is organization facet of: Terra |
Free, Freely available | https://app.terra.bio/#workspaces/warp-pipelines/Smart-seq2_Single_Nucleus_Muti-Sample | https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/smartseq2_single_nucleus_multisample | SCR_021312 | Multi-snSS2, Smart-seq2 Single Nucleus Multi-Sample Pipeline | 2026-09-03 05:00:12 | 2 | |||||||
|
M-Track project Resource Report Resource Website |
M-Track project (RRID:SCR_021433) | data or information resource, portal, project portal | Project related to tracking movement of labelled paws in grooming and freely behaving mice. Provides software toolbox for automated detection of forepaw trajectories in mice. | Automated detection, forepaw trajectories, labelled forepaw, freely behaving mice, freely behaving rats, simultaneous trackcking individual paws, movement, spontaneous grooming episodes, OpenBehavior |
is listed by: OpenBehavior is related to: M-Track |
DOI:10.1371/journal.pcbi.1005115 | Free, Freely available | SCR_021433 | M-Track | 2026-09-03 05:01:10 | 0 | ||||||||
|
ModelMatcher Resource Report Resource Website 1+ mentions |
ModelMatcher (RRID:SCR_021208) | data or information resource, portal | Matchmaking platform for clinicians and scientists to facilitate collaborative research on rare and undiagnosed diseases. Used for collaborative projects that advance scientific knowledge and patient care. Currently supports Mouse, Rat, Frog, Zebrafish, Fruit Fly, Nematode Worm, Budding Yeast, Fission Yeast, and E. coli. Used to identify human ortholog of genes in these model organisms and vice versa. Scientists who register in ModelMatcher are asked to classify their genes of interest into Public or Restricted categories.The Match feature will allow Clinicians to obtain information on genes that Scientists classify as both Public and Restricted. | Rare diseases collaborative research, undiagnosed diseases, identify human genes ortholog, genes classification, gene information for clinicians |
is related to: University of British Columbia; British Columbia; Canada has parent organization: Baylor College of Medicine; Houston; Texas |
Free, Freely available | SCR_021208 | 2026-09-03 05:00:37 | 4 | ||||||||||
|
Pathfinder project Resource Report Resource Website |
Pathfinder project (RRID:SCR_021447) | data or information resource, portal, project portal | Project to detect spatial navigation behavior in animals.Provides open source software for analyzing spatial navigation search strategies developed by University of British Columbia scientists. | Analyzing spatial navigation search strategies, spatial navigation, search strategies, OpenBehavior |
is listed by: OpenBehavior is related to: Pathfinder has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.1101/715961 | Free, Freely available | SCR_021447 | Pathfinder | 2026-09-03 05:00:28 | 0 | ||||||||
|
AutoPilot project Resource Report Resource Website 1+ mentions |
AutoPilot project (RRID:SCR_021448) | data or information resource, portal, project portal | Project related to behavioral experiments.Provides software Python framework for running behavioral experiments designed by University of Oregon scientists. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot has parent organization: University of Oregon; Oregon; USA |
DOI:10.1101/807693 | Free, Freely available | SCR_021448 | AutoPilot | 2026-09-03 05:00:14 | 1 | ||||||||
|
Bonsai project Resource Report Resource Website |
Bonsai project (RRID:SCR_021443) | data or information resource, portal, project portal | Project related to composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. Provides open source software tool as visual language for reactive programming. | Reactive programming visual language, composing reactive data streams, composing asynchronous data streams, video cameras data, microphones data, electrophysiology systems data, data acquisition boards, OpenBehavior |
is listed by: OpenBehavior is related to: Bonsai |
DOI:10.3389/fninf.2015.00007 | Free, Freely available | SCR_021443 | Bonsai | 2026-09-03 05:01:11 | 0 | ||||||||
|
ENCODE Transcription Factor and Histone ChIP-Seq processing pipeline Resource Report Resource Website 50+ mentions |
ENCODE Transcription Factor and Histone ChIP-Seq processing pipeline (RRID:SCR_021323) | data processing software, software application, software resource, software toolkit | Software tool as ChIP-seq pipeline for processing ChIP-seq reads, aligning to reference genome, peak calling, and IDR analysis of replicate data according to ENCODE standards. | ChIP-seq pipeline, processing ChIP-seq reads, aligning to reference genome, peak calling, IDR analysis, replicate data, ENCODE standards | PMID:22955991 | Free, Available for download, Freely available | SCR_021323 | 2026-09-03 05:00:38 | 97 | ||||||||||
|
SouthernBiotech Resource Report Resource Website 100+ mentions |
SouthernBiotech (RRID:SCR_019250) | material resource, reagent supplier | Commercial antibody company that focuses on the development, production, purification, conjugation, and commercialization of antibodies. | commercial, antibody, reagent, biomedical, research | SCR_019250 | 2026-09-03 05:01:07 | 134 | ||||||||||||
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Leinco Technologies Resource Report Resource Website 1+ mentions |
Leinco Technologies (RRID:SCR_019252) | material resource, reagent supplier | A manufacturer of early discovery research products including antibodies, recombinant proteins, ELISA kits, second step reagents and other life sciences products. | commercial, antibody, reagent, biomedical, research, biotechnology, ELISA, recombinant, proteins, life science | SCR_019252 | 2026-09-03 05:00:03 | 2 | ||||||||||||
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DeepBehavior project Resource Report Resource Website |
DeepBehavior project (RRID:SCR_021387) | data or information resource, portal, project portal | Project related to behavior tracking and analysis. Provides deep learning toolbox that automates taking high speed quality video to track behavior in rodents and humans. | Track behavior, analyze and track behavior, rodent, human, automated analysis, imaging data, OpenBehavior |
is listed by: OpenBehavior is related to: DeepBehavior |
DOI:10.3389/fnsys.2019.00020 | Free, Freely available | SCR_021387 | DeepBehavior | 2026-09-03 05:00:13 | 0 | ||||||||
|
Worm Behavior Platform project Resource Report Resource Website |
Worm Behavior Platform project (RRID:SCR_021420) | data or information resource, portal, project portal | Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis. | Worm behavior data analysis, worm behavior data sharing, worm behavior data, Caenorhabditis elegans behavioral data, Worm tracker Commons Object Notation, OpenBehavior |
is listed by: OpenBehavior is related to: Worm Behavior Platform |
DOI:10.1038/s41592-018-0112-1 | Free, Freely available | SCR_021420 | Worm Behavior Platform | 2026-09-03 05:00:14 | 0 | ||||||||
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SLEAP, LEAP and MotionMapper project Resource Report Resource Website |
SLEAP, LEAP and MotionMapper project (RRID:SCR_021383) | data or information resource, portal, project portal | Collection of tools to do video analysis in behavioral neuroscience applications.Offers open source software tools including SLEAP, LEAP and MotionMapper. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: MotionMapper is related to: Social LEAP is related to: Variational Embedding of Animal Motion is related to: BehaviorDEPOT has parent organization: Princeton University; New Jersey; USA |
Free, Freely available | SCR_021383 | LEAP and MotionMapper, SLEAP | 2026-09-03 05:00:27 | 0 | |||||||||
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idtracker.ai project Resource Report Resource Website |
idtracker.ai project (RRID:SCR_021417) | data or information resource, portal, project portal | Project related to tracking individual animals in large collective groups.Provides algorithm and software for tracking individuals in large collectives of unmarked animals.Tracks animal identification and tracks when animals touch or cross paths in front of one another. | Python Video Annotator, animal identification tracking, animals touch tracking, tracking animal cross paths, OpenBehavior |
is listed by: OpenBehavior is related to: idtracker.ai |
DOI:10.1038/s41592-018-0295-5 | Free, Freely available | SCR_021417 | idtracker.ai | 2026-09-03 05:00:38 | 0 | ||||||||
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Calcium ActiVity Explorer project Resource Report Resource Website |
Calcium ActiVity Explorer project (RRID:SCR_021419) | CAVE | data or information resource, portal, project portal | Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data. | Head mounted calcium imaging, calcium imaging and behavior, calcium imaging, analyze imaging data, head mounted microscopes, behavioral data, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium ActiVity Explorer |
DOI:10.3389/fnins.2018.00958 | Free, Freely available | SCR_021419 | Calcium ActiVity Explorer | 2026-09-03 05:00:05 | 0 | |||||||
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OpenRefine Resource Report Resource Website 50+ mentions |
OpenRefine (RRID:SCR_021305) | data processing software, software application, software resource | Open source software Java tool for working with data. Used for loading data, cleaning up data, transforming data from one format into another and extending it with web services and external data. | Wikidata, data wrangling, loading data, cleaning up data, transforming data | is related to: Wikidata | DOI:10.3163/1536-5050.101.3.020 | Free, Available for download, Freely available | Wikidata_Q5583871 | https://www.wikidata.org/wiki/Q5583871, https://github.com/OpenRefine/OpenRefine | SCR_021305 | openrefine, Google Refine | 2026-09-03 05:00:04 | 50 | ||||||
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Hierarchical Data Modeling Framework Resource Report Resource Website 1+ mentions |
Hierarchical Data Modeling Framework (RRID:SCR_021303) | HDMF | data processing software, software application, software resource, software toolkit | Open source software Python package for working with hierarchical data. Provides APIs for specifying data models, reading and writing data to different storage backends, and representing data with Python object.Used for working with standardizing, reading, and writing hierarchical object data. | Hierarchical data, data models, reading data, writing data, unified data format, different storage backends, Python object, data, data standards |
is used by: PyNWB is related to: Neurodata Without Borders is related to: Neurodata Extensions Catalog is related to: HDMF Documentation Utilities is related to: HDMF Common Schema |
DOI:10.1109/BigData47090.2019.9005648 | Free, Available for download, Freely available | SCR_021303 | 2026-09-03 05:00:27 | 1 |
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