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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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National Plant Germplasm System (NPGS) Resource Report Resource Website 10+ mentions |
National Plant Germplasm System (NPGS) (RRID:SCR_016785) | NPGS | data or information resource, organization portal, portal | Cooperative effort by U.S. state and federal government and private organizations to preserve the genetic diversity of plants. The NPGS aids scientists and the need for genetic diversity by acquiring, preserving, evaluating, documenting and distributing crop germplasm. The NPGS is managed by the Agricultural Research Service (ARS), the in-house research agency of the United States Department of Agriculture (USDA). Funding for the NPGS comes primarily through appropriations from the U.S. Congress. | preserve, genetic, diversity, plant, germplasm, agriculture | U.S. Congress | SCR_016785 | National Plant Germplasm System, NPGS | 2026-09-03 05:00:01 | 23 | |||||||||
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CAPT Resource Report Resource Website 1+ mentions |
CAPT (RRID:SCR_016305) | data processing software, image analysis software, software application, software resource | Software for molecular weight, quantification of bands, colony counting and distance calculation in Vilber Lourmat gel documentation imaging systems. Used in molecular biology laboratories. | gel, image, molecular, weight, quantification, band, colony, count, distance, calculation, imaging, system | Commercially available | SCR_016305 | 2026-09-03 05:00:14 | 4 | |||||||||||
|
Xenonucleic Acid Computing Group Wiki Template Resource Report Resource Website |
Xenonucleic Acid Computing Group Wiki Template (RRID:SCR_016905) | xacg | data or information resource, portal, service resource | Molecular computing based on XNA-built alphabets. | molecular, computing, xeno, nucleic, acid, synthetic, biopolymer, XNA-built, alphabet | http://www.bioinformatics.org/groups/?group_id=1222 | SCR_016905 | Xenonucleic Acid Computing Group | 2026-09-03 05:00:15 | 0 | |||||||||
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OCICB Resource Report Resource Website |
OCICB (RRID:SCR_016597) | OCICB | data or information resource, organization portal, portal | Office of Cyber Infrastructure and Computational Biology of NIAID. | office, cyber, infrastructure, computational, biology, NIAID |
has parent organization: NIAID is parent organization of: Nephele |
NIH | SCR_016597 | Office of Cyber Infrastructure and Computational Biology | 2026-09-03 05:00:14 | 0 | ||||||||
|
AssayZap Resource Report Resource Website 10+ mentions |
AssayZap (RRID:SCR_016991) | data processing software, software application, software resource | Software tool as universal assay calculator for RIA, ELISA, IRMA, colorimetric or any other type of assay by Biosoft. Maintains record for each assay, and enables standard curve and QCs to be compared and adjusted. Can process data from 96 and 384-well plate readers in any order. | assay, calculator, RIA, ELISA, IRMA, Biosoft, data, process | Commercially available | SCR_016991 | 2026-09-03 05:00:16 | 15 | |||||||||||
|
DOAF Resource Report Resource Website 1+ mentions |
DOAF (RRID:SCR_015666) | DOAF | data or information resource, database, portal, project portal | Project portal for a collaborative database aiming to provide a comprehensive annotation to human genome.It uses the computable, controlled vocabulary of Disease Ontology (DO) and NCBI Gene Reference Into Function (GeneRIF). | disease ontology, annotation, collaboration, collaborative project, java, perl, rubby |
uses: Human Disease Ontology is related to: NUgene Project is related to: Gene Ontology is related to: OBO has parent organization: Northwestern University; Illinois; USA |
NCRR 1R01RR025342; CTSA UL1RR025741 |
PMID:23251346 | Public, Available for download, Tutorial Available | SCR_015666 | Disease Ontology Annotation Framework, Disease Ontology Annotation Framework (DOAF) | 2026-09-03 05:00:27 | 1 | ||||||
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Digital Differential Display (DDD) Resource Report Resource Website |
Digital Differential Display (DDD) (RRID:SCR_016638) | DDD | data processing software, software application, software resource | Software tool for comparing EST profiles in order to identify genes with significantly different expression levels. | comparing, EST, profile, identify, gene, different, expression, level |
has parent organization: NCBI works with: UniGene |
Public, Free, Freely available | SCR_016638 | Digital Differential Display | 2026-09-03 05:00:15 | 0 | ||||||||
|
split_pairs.pl Resource Report Resource Website 1+ mentions |
split_pairs.pl (RRID:SCR_015707) | data processing software, software application, software resource | Software for processing NGS sequence reads in FASTQ and FASTA formats. split_pairs.pl is suited particularly for the task of sorting pair end reads and for modifying their headers with Perl-style regular expressions. | ngs sequence read, fasta file, fastq file, pair end sorting, perl-style regular expression | Free, Available for download, Runs on Linux, Runs on Mac OS | SCR_015707 | split_pairs | 2026-09-03 05:00:12 | 1 | ||||||||||
|
INCell Developer Toolbox Resource Report Resource Website 10+ mentions |
INCell Developer Toolbox (RRID:SCR_015790) | data processing software, image analysis software, software application, software resource | Image analysis software for developing new cellular assay analysis routines. This software provides a selection of advanced segmentation, pre-processing and post-postprocessing tools. | INCell, HCA, cellular assay, advanced segmentation, image analysis, cellular imaging | Commercially available, Available for purchase | SCR_015790 | IN Cell Developer Toolbox v1.6, IN Cell Developer Toolbox | 2026-09-03 05:00:12 | 30 | ||||||||||
|
ProCon - PROteomics CONversion Resource Report Resource Website 1+ mentions |
ProCon - PROteomics CONversion (RRID:SCR_016363) | ProCon | data processing software, software application, software resource | Java based conversion tool for conversion of data from Proteomics files or a LIMS (Laboratory Information Management System) database into standard formats. Used to support wet-lab scientists in creating proteomics data files ready for upload into the public repositories. | data, proteomics, conversion, file, laboratory, information, management, system, database, standard, format, , bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Ruhr University Bochum; North Rhine-Westphalia; Germany |
European Union Projects ProDac ; European Union Projects ProteomeXchange ; the German Federal Ministry of Education and Research BMBF |
PMID:26182917 | Free, Available for download, Freely available | biotools:procon | https://bio.tools/procon | SCR_016363 | PROteomics CONversion | 2026-09-03 05:00:13 | 1 | ||||
|
NanoFilt Resource Report Resource Website 100+ mentions |
NanoFilt (RRID:SCR_016966) | data processing software, software application, software resource | Software tool written in Python to perform its filtering based on mean read quality and GC content and read length. Used for filtering and trimming of long read sequencing data. | filtering, trimming, long, sequencing, data, read |
is listed by: OMICtools is listed by: Debian |
Free, Available for download, Freely available | https://sources.debian.org/src/nanofilt/ | SCR_016966 | 2026-09-03 05:00:01 | 331 | |||||||||
|
Monogenic Diabetes Registry Resource Report Resource Website |
Monogenic Diabetes Registry (RRID:SCR_015883) | MDR, NDR, MODYR | data or information resource, database, portal, project portal | Research project that aims to learn more about the number of people who have monogenic diabetes, why and how it happens, and how best to treat it. Any adult or child with a known genetic cause of diabetes may join the MODY Registry. | monogenic, diabetes, neonatal, mody, diabetes research, genetic disease |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers has parent organization: University of Chicago; Illinois; USA |
Diabetes, Monogenic Diabetes, Neonatal Diabetes, MODY | NIDDK | Public, Diagnosed individuals may register, Freely available | SCR_015883 | MODY Registry, Neonatal Diabetes Registry | 2026-09-03 05:00:57 | 0 | ||||||
|
ScaffMatch Resource Report Resource Website 1+ mentions |
ScaffMatch (RRID:SCR_017025) | data processing software, software application, software resource | Software tool as scaffolding algorithm based on maximum weight matching able to produce high quality scaffolds from next generation sequencing data (reads and contigs). Able to handle reads with both short and long insert sizes. | scaffolding, algorithm, maximum, weight, matching, next, generation, sequencing, data, read, contig, bio.tools |
uses: Python Programming Language is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Georgia State University; Georgia; USA |
NSF IIS 0916401 | PMID:25890305 | Free, Available for download, Freely available | biotools:scaffmatch, OMICS_08198 | http://alan.cs.gsu.edu/NGS/?q=content/scaffmatch, https://bio.tools/scaffmatch | SCR_017025 | 2026-09-03 05:00:17 | 1 | ||||||
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BrainVision Recorder Resource Report Resource Website 100+ mentions |
BrainVision Recorder (RRID:SCR_016331) | data processing software, software application, software resource | Software for multifunctional recording designed to provide Brain Products GmbH- Solutions for Neurophysiological Research amplifier with a platform for recording setup and execution. | multifunctional, recording, Brain Products GmbH Solutions for Neurophysiological Research, amplifier, platform, recording, execution, setup | Commercially available, Available for trial | SCR_016332 | http://pressrelease.brainproducts.com/recorder-tips/ | SCR_016331 | 2026-09-03 05:00:28 | 153 | |||||||||
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DMT Normalization Resource Report Resource Website 1+ mentions |
DMT Normalization (RRID:SCR_017024) | data processing software, software application, software resource | Software tool for calculating optimal pretension conditions for microvascular or any small tubular tissue research. DMT Normalization Add-On, provided by ADInstruments, is included as part of LabChart Pro or can be purchased separately. | calculating, optimal, pretension, condition, microvascular, small, tubular, tissue | Commercially available | SCR_017024 | DMT Normalization Add-On | 2026-09-03 05:00:02 | 1 | ||||||||||
|
National Glycohemoglobin Standardization Program Resource Report Resource Website 500+ mentions |
National Glycohemoglobin Standardization Program (RRID:SCR_015885) | NGSP | data or information resource, portal, project portal | Project that aims to standardize Hemoglobin A1c test results to those of the Diabetes Control and Complications Trial (DCCT) and United Kingdom Prospective Diabetes Study (UKPDS) which established the direct relationships between HbA1c levels and outcome risks in patients with diabetes. | glycohemoglobin, diabetes, dcct, ukpds, hba1c, diabetes patient, hemoglobin, a1c |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers |
Diabetes | NIDDK UC4 DK096587 | Public | SCR_015885 | NGSP: National Glycohemoglobin Standardization Program | 2026-09-03 04:59:58 | 932 | ||||||
|
BASTA Resource Report Resource Website 1+ mentions |
BASTA (RRID:SCR_017303) | data processing software, software application, software resource, software toolkit | Software package as Bayesian method to infer migration from genetic data. Implemented in BEAST2 that combines accuracy of methods based on structured coalescent with computational efficiency required to handle more than few populations. | Bayesian method, infer, migration, genetic, data, structured, coalescent, approximation, population | is related to: BEAST2 | DOI:10.1371/journal.pgen.1005421 | Free, Available for download, Freely available | SCR_017303 | BAyesian STructured coalescent Approximation, BASTA, BEAST2 | 2026-09-03 04:59:56 | 1 | ||||||||
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GEOMAGIC Studio Resource Report Resource Website 1+ mentions |
GEOMAGIC Studio (RRID:SCR_016978) | GEOMAGIC Studio 12 | data processing software, software application, software resource | Software tool to convert 3D scans into parametric models. Transforms 3D scan data into highly accurate surface, polygon and native CAD models. Used for reverse engineering, product design, rapid prototyping and analysis. | 3D, scan, convert, data, surface, polygon, native, CAD, model | Free, Available for download, Freely available | https://de.3dsystems.com/press-releases/geomagic/studio-12-offers-fastest-way-to-convert-3d-scans-of-phy | SCR_016978 | 2026-09-03 05:00:16 | 1 | |||||||||
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Albacore Resource Report Resource Website 100+ mentions |
Albacore (RRID:SCR_015897) | data processing software, software application, software resource | Data processing basecaller for the Oxford Nanopore sequencer that identifies DNA sequences directly from raw data. It enhances accuracy of the single-read sequence data, contributing to high consensus accuracy for nanopore sequence data. | sequence, dna, raw data, event detection, single-read, nanopore, basecaller, basecaller software, dockerfile | Free, Available for download | SCR_015897 | 2026-09-03 05:00:27 | 437 | |||||||||||
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Natural Stress Relief Resource Report Resource Website |
Natural Stress Relief (RRID:SCR_015898) | NSR | data or information resource, organization portal, portal | Organization that provides instructions for and research on the Natural Stress Relief (NSR) meditation method. | stress, relief, natural, organization, non-profit, research, mediation | SCR_015898 | 2026-09-03 05:00:13 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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