Tools   Select Another Resource Report Type

https://www.nrel.gov/grid/wind-toolkit.html

United States national wind dataset. Provides high spatial and temporal resolution wind power, wind power forecast, and meteorological data for 7-year period at over 126,000 locations throughout continental United States. The largest publicly available wind power data set in the world. Used for wind energy integration studies. It is accessible through Web-based API.

Proper citation: Wind Integration National Dataset Toolkit (RRID:SCR_023782) Copy   

•   Source: SciCrunch Registry

https://www.crisprscan.org/

Web tool for predictive sgRNA-scoring that captures sequence features affecting Cas9/sgRNA activity in vivo. Scoring algorithm to help select the best gRNAs for CRISPR.

Proper citation: CRISPRscan (RRID:SCR_023777) Copy   

•   Source: SciCrunch Registry

https://www.cancermodels.org/

Cancer research platform that aggregates clinical, genomic and functional data from various types of patient derived cancer models, xenographs, organoids and cell lines. Open catalog of harmonised patient-derived cancer models. Standardises, harmonises and integrates clinical metadata, molecular and treatment-based data from academic and commercial providers worldwide. Data is FAIR and underpins generation and testing of new hypotheses in cancer mechanisms and personalised medicine development. PDCM Finder have expanded to organoids and cell lines and is now called CancerModels.Org. PDCM Finder was launched in April 2022 as successor of PDX Finder portal, which focused solely on patient-derived xenograft models.

Proper citation: CancerModels.Org (RRID:SCR_023931) Copy   

•   Source: SciCrunch Registry

https://pmc.ncbi.nlm.nih.gov/articles/PMC4525701/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 25,2025. Web tool to parse Sanger sequencing chromatograms with double peaks into wildtype and alternative allele sequences. Used to separate chromatogram data containing ambiguous base calls into wildtype and mutant allele sequences.Used for identification of unknown indels using sanger sequencing of polymerase chain reaction products.

Proper citation: Poly Peak Parser (RRID:SCR_023776) Copy   

•   Source: SciCrunch Registry

https://github.com/Aswendt-Lab/AIDAhisto

Software atlas based imaging data analysis tool for quantitative mouse brain histology. Can automatically detect cells in histological mouse brain and spinal cord sections of interest.

Proper citation: AIDAhisto (RRID:SCR_023818) Copy   

•   Source: SciCrunch Registry

https://mass-spec.stanford.edu/instruments

Agilent 6495C triple quadrupole LC/MS system increases capacity and sensitivity for targeted quantitation applications. Used to investigate more diverse and biologically relevant groups of targeted peptides, small molecules and metabolites in single experiment without compromising sensitivity, quantitative accuracy, or linearity.

Proper citation: Agilent: 6495 Triple Quadrupole LC/MS (RRID:SCR_023937) Copy   

•   Source: SciCrunch Registry

https://github.com/rrwick/Deepbinner

Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads.

Proper citation: Deepbinner (RRID:SCR_024001) Copy   

•   Source: SciCrunch Registry

http://www.ctsim.org

Software tool to simulate process of transmitting X-rays through phantom objects. Reconstructs original phantom image from projections. Has wide array of image analysis and image processing functions.

Proper citation: CTSim (RRID:SCR_024004) Copy   

•   Source: SciCrunch Registry

https://www.malvernpanalytical.com/en/support/product-support/software/microcal-peaq-itc-analysis-software-v141

Software application for isothermal titration calorimetry performed on MicroCal PEAQ instrument by Malvern.

Proper citation: Malvern Panalytical MicroCal PEAQ-ITC analysis (RRID:SCR_023795) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/thunder-imaging-systems/p/thunder-imager-3d-live-cell/

Advanced widefield microscope enabling use of 3D specimens with camera based fluorescence microscopes. System ensures low phototoxicity and photobleaching, i.e., higher throughput with optimal conditions.

Proper citation: Leica: Thunder Imager Live Cell system (RRID:SCR_023794) Copy   

•   Source: SciCrunch Registry

https://www.ulethbridge.ca/

University of Lethbridge with campuses in Lethbridge and Calgary, is one of Canada"s leading research institutions.

Proper citation: University of Lethbridge; Alberta; Canada (RRID:SCR_023792) Copy   

•   Source: SciCrunch Registry

https://www.cdc.gov/cancer/hpv/statistics/cases.htm

Portal provides HPV-associated cancer statistics. Population based data from cancer tissue to estimate percentage of these cancers that are caused by HPV. Portal provides number of HPV-Attributable Cancer Cases per Year.

Proper citation: Centers for Disease Control and Prevention HPV-Associated Cancer (RRID:SCR_023944) Copy   

•   Source: SciCrunch Registry

https://pathvisio.org/

Software visualization tool for biological pathways. Pathway analysis and drawing software which allows drawing, editing, and analyzing biological pathways. Developed in Java and can be extended with plugins.

Proper citation: PathVisio (RRID:SCR_023789) Copy   

•   Source: SciCrunch Registry

https://hints.cancer.gov/

Regularly collects nationally representative data about American public’s knowledge of, attitudes toward, and use of cancer and health related information. HINTS data are used to monitor changes in fields of health communication and health information technology and to create more effective health communication strategies across different populations. Weighted, nationally representative probability based survey of civilian, non-institutionalized adults administered by National Cancer Institute on knowledge of and attitudes toward cancer relevant information.

Proper citation: Health Information National Trends Survey (RRID:SCR_023943) Copy   

•   Source: SciCrunch Registry

https://www.eneuro.org/content/9/5/ENEURO.0099-22.2022

Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed.

Proper citation: Customized Guide Cannulas (RRID:SCR_023941) Copy   

•   Source: SciCrunch Registry

https://github.com/Nexusger/AllenMouseBrainImageLoader

Respository contains two small software tools which render annotation and images of the Allen Mouse Brain Atlas. Both tools generate 1304 images of the Mouse Brain (456 sagital, 528 coronal and 320 axial).

Proper citation: Allen Mouse Brain ImageLoader (RRID:SCR_023827) Copy   

•   Source: SciCrunch Registry

https://github.com/qmarcou/IGoR/

C++ software designed to infer V(D)J recombination related processes from sequencing data.

Proper citation: IGoR (RRID:SCR_024053) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/paulklemm_PHD/proteinortho

Software tool to detect orthologous genes within different species. Stand-alone tool for large datasets for orthology analysis.

Proper citation: Proteinortho (RRID:SCR_024177) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/genomicepidemiology/kmerresistance/src/master/

Software tool to correlate mapped genes with the predicted species of WGS samples, where this allows for identification of genes in samples which have been poorly sequenced or high accuracy predictions for samples with contamination. KmerResistance has one dependency, namely KMA to perform the mapping, which is also freely available.

Proper citation: KmerResistance (RRID:SCR_024058) Copy   

•   Source: SciCrunch Registry

https://rostlab.org/owiki/index.php/PROFisis

Software tool that identifies interacting residues from sequence alone. Developed using transient protein�protein interfaces from complexes of experimentally known 3D structures.

Proper citation: PROFisis (RRID:SCR_024179) Copy   

•   Source: SciCrunch Registry