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https://www.mitochondriasci.com/syndromes.html

Creative Biogene works with you to validate and explore pathogenesis of mitochondria associated syndromes and possible interventions, with professional services and products to support your research. Provides rapid mitochondrial function testing services, allowing clients to accurately analyze relationship between disease and mitochondria.

Proper citation: Creative Biogene Mitochondria Associated Syndromes (RRID:SCR_022081) Copy   

•   Source: SciCrunch Registry

https://yoda.yale.edu/

Project to promote and facilitate sharing of clinical trial data. Provides set of policies to set standards to enhance data availability and transparency in support of strong scientific research which aims to advance scientific and medical knowledge with goal of improving public health and healthcare delivery. Project has the final decision making rights regarding these policies and granting or denial of data requests, as per contractual agreements between the YODA Project and its partners.

Proper citation: Yoda Project (RRID:SCR_022761) Copy   

•   Source: SciCrunch Registry

https://genetics.opentargets.org/

Portal offers features to help discover associations between genes, variants, and traits including Browse and rank gene and variant associations identified by Locus-to-Gene (L2G) scoring pipeline, Uncover credible sets for variant and trait associations based on mapping analyses pipeline, Explore and compare studies from UK Biobank, FinnGen, and GWAS Catalog using multi-trait comparison tool eQTL Catalogue.

Proper citation: Open Targets Genetics Portal (RRID:SCR_021701) Copy   

•   Source: SciCrunch Registry

https://cometbio.org/

Software tool to quantify comet parameters while studying DNA strand breaks. Automated tool for comet assay image analysis.

Proper citation: OpenComet (RRID:SCR_021826) Copy   

•   Source: SciCrunch Registry

https://bruskolab.diabetes.ufl.edu/research/handel-i/

HANDEL-1 program to better understand normal human immune development by acquiring stromal and mucosal tissues from infant and pediatric organ donors and to create novel and essential dataset informing immune system development in collaborative research project that leverages shared access to various tissues in conjunction with existing HANDEL-P program that seeks to understand development of pancreas and islet microenvironment in early life.

Proper citation: Human Atlas of Neonatal Development and Early Life Immunity (RRID:SCR_021947) Copy   

•   Source: SciCrunch Registry

https://proteins.plus

Web portal for structure analysis of macromolecules.

Proper citation: ProteinPlus (RRID:SCR_022178) Copy   

•   Source: SciCrunch Registry

https://research.nhgri.nih.gov/hydractinia/

Portal provides genomic and transcriptomic data for researchers interested in Hydractinia genomics and molecular biology. Includes browsers for the H. symbiolongicarpus and H. echinata genome assemblies and interactive interface for interrogating H. symbiolongicarpus single cell gene expression atlas. Provides gene pages with functional annotation data for every gene model for both species, including protein domain composition and orthology predictions.

Proper citation: Hydractinia Genome Project Portal (RRID:SCR_022602) Copy   

•   Source: SciCrunch Registry

https://scorch.igs.umaryland.edu/

Data coordination, analysis, and scientific outreach center to standardize and share single cell molecular HIV/SUD data by ensuring that data is FAIR. Program with mission of generating resources that would enable comprehensive tissue characterization at single cell level. This includes generating single nucleus transcriptomic data for identification of novel rare cell types, and enrichment of key cellular populations to inform pathophysiological understanding of CNS effects of SUD and HIV. Interdisciplinary effort, involving teams of investigators at ten institutions including Yale, Boston University, Mount Sinai, University of Nebraska Medical Center, Broad Institute, University of California San Diego, Weill Cornell Medicine, Allen Institute, Scripps Research as well as a Data Coordination Center hosted at Institute for Genome Sciences, University of Maryland Baltimore School of Medicine.

Proper citation: SCORCH (RRID:SCR_022600) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/self-grooming-mice/

Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups.

Proper citation: Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) Copy   

•   Source: SciCrunch Registry

https://lincsportal.ccs.miami.edu/signatures/home

Primary access point for compendium of LINCS data with substantial changes in data architecture and APIs, completely redesigned user interface, and enhanced curated metadata annotations to support more advanced, intuitive and deeper querying, exploration and analysis capabilities. LINCS datasets are accessible at data point level enabling users to directly access and download any subset of signatures across entire library independent from originating source, project or assay. Newly designed query interface enables global metadata search with autosuggest across all annotations associated with perturbations, model systems, and signatures.

Proper citation: LINCS Data Portal 2.0 (RRID:SCR_022566) Copy   

•   Source: SciCrunch Registry

https://gitlab.orc.gmu.edu/kbijari/zebrafish-analysis-protocol

Project for quantitative neuronal morphometry by supervised and unsupervised learning. Includes protocol to quantify and interpret morphological properties of individual neurons reconstructed from microscopic imaging.Includes information about installation of analysis tools and downloading datasets and custom codes.

Proper citation: neuronal reconstruction analysis project (RRID:SCR_021638) Copy   

•   Source: SciCrunch Registry

https://www.fredhutch.org/en/research/shared-resources.html

Through Shared Resources, investigators in Fred Hutch/University of Washington Cancer Consortium and external academic and industry organizations can access services tailored to their specific research goals, including novel assay development or early access to new technologies.

Proper citation: Fred Hutchinson Cancer Center Shared Resources (RRID:SCR_022607) Copy   

•   Source: SciCrunch Registry

http://lipiddroplet.org/

Interactive portal provides datasets, across variety of cell types, for LD biology, including transcriptional profiles of induced lipid storage, organellar proteomics, genome-wide screen phenotypes, and ties to human genetics. Provides comprehensive picture of genes and pathways affecting lipid droplet biology, including gene expression, proteomics, and LD morphology phenotypes, by integrating multiple relevant data types.

Proper citation: Lipid Droplet Knowledge Portal (RRID:SCR_021650) Copy   

•   Source: SciCrunch Registry

https://www.utsouthwestern.edu/labs/danuser/software/

Software package as quantitative image analysis software for measurement of microtubule dynamics. MATLAB software for tracking full dynamics of microtubules based on plusTIP marker live cell image sequences.

Proper citation: plusTipTracker (RRID:SCR_021890) Copy   

•   Source: SciCrunch Registry

https://ror.org/

Community led project to develop open, sustainable, usable, and unique identifier for every research organization in the world. Implementation of ROR IDs in scholarly infrastructure and metadata will enable more efficient discovery and tracking of research outputs across institutions and funding bodies.

Proper citation: Research Organization Registry (RRID:SCR_021891) Copy   

•   Source: SciCrunch Registry

https://github.com/muriloHoracio/TERL

Software tool for classification of transposable elements by convolutional neural networks. Preprocesses and transforms one dimensional sequences into two dimensional space data, image like data of sequences, and apply it to deep convolutional neural networks.

Proper citation: TERL (RRID:SCR_022064) Copy   

•   Source: SciCrunch Registry

https://azphewas.com/

Repository of gene phenotype associations for phenotypes derived from electronic health records, questionnaire data, and continuous traits computed on exomes released by UK Biobank. Repository was made available by AstraZeneca for public research.

Proper citation: AstraZeneca PheWAS Portal (RRID:SCR_021643) Copy   

•   Source: SciCrunch Registry

https://www.cs.bham.ac.uk/~ibs/imzMLConverter/

Software tool for generating imzML. Allows conversion to imzML mass spectrometry imaging standard utilising mzML mass spectrometry standard as intermediary format.

Proper citation: imzMLConverter (RRID:SCR_021642) Copy   

•   Source: SciCrunch Registry

https://github.com/LaubachLab/MedParse

Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes.

Proper citation: MedParse (RRID:SCR_021528) Copy   

•   Source: SciCrunch Registry

https://github.com/databricks/spark-xml

Software library for parsing and querying XML data with Apache Spark, for Spark SQL and DataFrames. XML data source for Spark SQL and DataFrames.

Proper citation: spark-xml (RRID:SCR_023636) Copy   

•   Source: SciCrunch Registry