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http://johnhommer.com/academic/code/cnrun/

Neuronal network model simulator for both individual neurons and networks of neurons. It uses NeuroML for network description. Various neuron and synapse model types are supported. CNN features include: an integration cycle which uses a Runge–Kutta 6-5-order method, extensive scripting capabilities, individual unit state introspection from scripts, and neuroplastic processes identified by label or regexp.

Proper citation: CNrun (RRID:SCR_014761) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/madsim/index.html

A function which allows users to generate two biological conditions synthetic microarray datasets. The user provides a subset of parameters, but default parameter settings can be modified.

Proper citation: madsim (RRID:SCR_014765) Copy   

•   Source: SciCrunch Registry

http://lucene1.neuinfo.org/nif_resource/monthly_results/current/

An automatic pipeline based on an algorithm that identifies new resources in publications every month to assist the efficiency of NIF curators. The pipeline is also able to find the last time the resource's webpage was updated and whether the URL is still valid. This can assist the curator in knowing which resources need attention. Additionally, the pipeline identifies publications that reference existing NIF Registry resources as this is also of interest. These mentions are available through the Data Federation version of the NIF Registry, http://neuinfo.org/nif/nifgwt.html?query=nlx_144509 The RDF is based on an algorithm on how related it is to neuroscience. (hits of neuroscience related terms). Each potential resource gets assigned a score (based on how related it is to neuroscience) and the resources are then ranked and a list is generated.

Proper citation: NIF Registry Automated Crawl Data (RRID:SCR_012862) Copy   

•   Source: SciCrunch Registry

http://www.ott.nih.gov/erma/

Database and tool for finding and licensing unpatented research materials to for-profit entities. eRMa was developed by the NIH Office of Technology Transfer to expedite the process for transferring unpatented research materials to for-profit entities. NIH researchers make unpatented materials available to companies through internal use licenses executed by the OTT to support the continued advancement of scientific research. Examples of materials include mouse models used to develop new cancer therapies and cell lines used to test new therapies for chronic diseases, such as high blood pressure. An NIH internal use license is a contract that governs the transfer of tangible research materials from NIH to a company for commercial research use.

Proper citation: NIH electronic Research Materials catalogue (RRID:SCR_013151) Copy   

•   Source: SciCrunch Registry

http://www.brimr.org/NIH_Awards/2010/NIH_Awards_2010.htm

Excel files available for download of ranking tables of NIH Funding to US Medical Schools in 2010, school and Principal Investigator (PI) rankings by Medical School Department, direct plus indirect costs (excluding both R & D contracts and American Recovery and Reinvestment Act (ARRA) Awards), etc. Categories under the Basic Science Department and Clinical Science Department are available as well as the rank of each School of Medicine from 2001-2010. The data in the 2010 Award files was obtained from the Research Portfolio Online Reporting Tool (RePORT) from the National Institutes of Health at http://report.nih.gov/award/trends/AggregateData.cfm. The Award Data correspond to the US Government fiscal year. Awards for 2010 correspond to those granted from 1 October 2009-30 September 2010. There is considerable variation on how universities credit awards and how the NIH deals with these variations.

Proper citation: Ranking Tables of NIH Funding to US Medical Schools in 2010 (RRID:SCR_013272) Copy   

•   Source: SciCrunch Registry

http://www.phylotree.org/

A phylogenetic tree of global human mitochondrial DNA variation, based on both coding- and control-region mutations, and including haplogroup nomenclature.

Proper citation: PhyloTree.org (RRID:SCR_012948) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/nutrient-and-phytochemical-analytics-shared-resource-npasr

THIS RESOURCE IS NO LONGER IN SERVICE. Documented in May 14,2024. Nutrient and Phytochemical Analytic Shared Resource (NPASR) provides expert bioanalytical method development and quantitative analysis. The NPASR will support development of methods and techniques to quantitatively determine nutrients and phytochemicals in foodstuffs as well as identification of these compounds and respective metabolites in biological samples from both human clinical trials and animal model investigations. The NPASR personnel are specialists in the field of analytical chemistry, concentrating their expertise in examining the bioavailability, metabolism and physiological significance of carotenoids, isothiocyanates, isoflavones and other phytochemicals. NPASR is capable of developing analytical methods for a Good Laboratory Practice (GLP) environment. Primary goals of NPASR are to provide investigators with expert, leading-edge bioanalytical method development and quantitative analysis of nutrients and phytochemicals in foodstuffs and their metabolites in biological samples and an enhanced understanding of the role of dietary compounds in cancer prevention and control.

Proper citation: OSU Nutrient and Phytochemical Analytics Shared Resource (RRID:SCR_012701) Copy   

•   Source: SciCrunch Registry

https://bils.se

A national research infrastructure that provides bioinformatics support to life science researchers in Sweden. Their work is supported by the Swedish Research Council.

Proper citation: Bioinformatics Infrastructure for Life Sciences (RRID:SCR_014723) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/bioprocess-scale-up-facility

The Bioprocess Scale-Up Facility (BSF) is the Biotechnology Research and Education Program''''s modern bioprocessing laboratory dedicated to the development and scale-up of biotechnology products and processes. With over 1000 fermentations conducted since 1998 alone, the BSF has accelerated the R&D of local biotechnology leaders such as Human Genome Sciences, NIH and MedImmune, as well as growing Maryland start-ups such as Martek Biosciences and Digene Corporation. The BSF''''s capabilities include fermentation, purification, product analysis and solving challenging problems such as biopolymers, turbulence and multiphase fluid dynamics, biosensors, process analysis and control, and both metabolic and biochemical engineering. BSF is a unique facility in Maryland not restricted by current good manufacturing practices (cGMP) requirements, and production processes are directly transferable to partners operating under cGMPs (required for FDA-approved clinical trials), such as Cambrex Inc. and the Walter Reed Army Institute of Research. The BSF enables small manufacturing companies to offer extended capabilities to major pharmaceutical (Big Pharma) companies out-of-state. The Biopharmaceutical Advancement Facility (BAF) specializes in the development of cell culture-based biopharmaceutical products. BAF is part of the Biotechnology Research and Education Program and a companion to the Bioprocess Scale-Up Facility in the Maryland Technology Enterprise Institute (Mtech) at the University of Maryland. The facility''''s staff members offer extensive expertise in addressing challenging problems with the advancement of anchorage-dependent or suspension-adapted cell lines. The facility is not restricted by current good manufacturing practices (cGMPs); however, production processes are directly transferable to partners operating under cGMPs.

Proper citation: UMD Bioprocess Scale-Up Facility (RRID:SCR_012703) Copy   

•   Source: SciCrunch Registry

http://corefacilities.case.edu/animal.php

A set of core facilities of Case Western Reserve University School of Medicine which allows users to create and analyze in vivo animal models. The various facilities provide animal care, transgenic models, imaging, irradiation, and phenotyping for research concerning such topics as cancer, metabolic processes, and behavior. In vivo animals provided include mice, zebrafish, and rodents.

Proper citation: CWRU In Vivo Animal Facilities (RRID:SCR_014209) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/advanced-imaging-core-aic-uchicago

The Center''''s Advanced Imaging Core (AIC) features state-of-the-art core technologies available on a fee for service basis.

Proper citation: UChicago Advanced Imaging Core (RRID:SCR_012704) Copy   

•   Source: SciCrunch Registry

http://dataelixir.com

A web-based information resource providing current news and resources relevant to data science. Users can subscribe to the weekly newsletter by providing an email address or visit the site. The site displays the current week's news and houses an archive of their past newsletters.

Proper citation: Data Elixir (RRID:SCR_013762) Copy   

•   Source: SciCrunch Registry

http://www.mq.edu.au/

Proper citation: Macquarie University; Sydney; Australia (RRID:SCR_012796) Copy   

•   Source: SciCrunch Registry

http://www.informatics.jax.org/external/festing/mouse/STRAINS.shtml

A list of major inbred mouse strains from the Jackson laboratories. This list is not being actively maintained (found on Nov 27, 2013).

Proper citation: MGI strains (RRID:SCR_012950) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/stark_aging/

Behavioral and imaging data from about 120 participants aged 18-89. Data were collected as part of a grant to use high-resolution imaging and advanced behavioral tasks to understand how aging affects the hippocampus and how this is related to age-related cognitive decline. The full dataset includes traditional neuropsycholgical measures, hippocampal-specific behavioral measures, whole-brain DTI, high-resolution DTI of the medial temporal lobes, and structural MRI including segmentation of grey/white/CSF, of cortical regions and of hippocampal subfields.

Proper citation: Stark Cross-Sectional Aging (RRID:SCR_014171) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/blizard-institute-of-cell-and-molecular-science-bicm

The Blizard Institute is the largest institute of Barts and the London School of Medicine and Dentistry and aims to deliver excellence in all aspects of research, teaching and clinical service

Proper citation: Blizard Institute of Cell and Molecular Science Labs and Facilities (RRID:SCR_012711) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/cell-biology-and-bioimaging-core-cbbc-lsu

The Cell Biology and Bioimaging Core (CBBC) provides access to state of the art imaging, analytical, and histological equipment as well as technical expertise and assistance to researchers at the PBRC, LSU''s main campus, and outside the LSU university system.

Proper citation: LSU Cell Biology and Bioimaging Core (RRID:SCR_012714) Copy   

•   Source: SciCrunch Registry

http://www.ucdavis.edu/

Proper citation: University of California at Davis; California; USA (RRID:SCR_012713) Copy   

•   Source: SciCrunch Registry

https://cbc.arizona.edu/research/support-services/facilities/nuclear-magnetic-resonance-nmr

Interdisciplinary NMR spectroscopy research facility for structural elucidation and study of conformation and dynamics of organic compounds, peptides, oligonucleotides and other small biopolymers.

Proper citation: University of Arizona Nuclear Magnetic Resonance Core Facility (RRID:SCR_012716) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/papaya

A pure JavaScript medical research image viewer, compatible across a range of popular web browsers. The orthogonal viewer supports NIFTI and DICOM files, overlays and atlas labels. It requires Firefox (7+), Chrome (7+), Safari (6+), MobileSafari (iOS 6+), or IE (10+).

Proper citation: Papaya (RRID:SCR_014188) Copy   

•   Source: SciCrunch Registry