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http://meadows-research.com

Online behavioral experiment platform.

Proper citation: Meadows (RRID:SCR_023218) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ratcave/

Portal provides open source, cross platform Python library that adds 3D stimulus support to all OpenGL based 2D Python stimulus libraries. Ratcave comes with resources including basic 3D object primitives and wide range of 3D light effects. Intuitive object oriented interface allows for all objects, which include meshes, lights, and cameras, can be repositioned, rotated, and scaled.

Proper citation: Ratcave project (RRID:SCR_021555) Copy   

•   Source: SciCrunch Registry

https://app.pennsieve.io

Platform to manage and curate large scientific datasets. Used for scientific data management and analysis.Provides advanced functionality to organize files and complex metadata describing datasets and allows users to interact, search, and analyze these data through web application or programmatically using Python client. Provides end-to-end solution for publishing datasets through Blackfynn Discover, assigning DOIs and ensuring that published data becomes available to larger academic community in sustainable and FAIR manner.

Proper citation: Pennsieve Data Management Platform (RRID:SCR_021677) Copy   

•   Source: SciCrunch Registry

https://scijava.org/

Collection of foundational software libraries, upon which ImageJ2 and Fiji are built. It is a collaboration of projects providing software for scientific computing in effort to cooperate and reuse code.

Proper citation: scijava (RRID:SCR_023335) Copy   

•   Source: SciCrunch Registry

https://covidcg.org/?tab=home

Open browser to inform therapeutics development for tracking SARS-CoV-2 single nucleotide variations, lineages, and clades using virus genomes on GISAID database while filtering by location, date, gene, and mutation of interest. can Provides information on which virus mutations are present in area during specific period by processing data on mutations found in viral genetic material collected worldwide from hundreds of thousands of people with COVID-19, which are hosted in existing online database.

Proper citation: COVID CG (RRID:SCR_022266) Copy   

•   Source: SciCrunch Registry

https://sciendo.com/article/10.5617/jeb.2985

A software to display, record and data processing of physiological signals. DataLyser is custom-built software developed at Walter Reed Army Institute of Research, Silver Spring, MD. It is not copyrighted.

Proper citation: DataLyser (RRID:SCR_022783) Copy   

•   Source: SciCrunch Registry

https://github.com/wtsi-hpag/PretextMap

Software tool to convert SAM formatted read pairs into genome contact maps. Prepares alignments for visualization with PretextView.

Proper citation: PretextMap (RRID:SCR_022023) Copy   

•   Source: SciCrunch Registry

https://www.openanatomy.org/

Project aims to change anatomy atlas by building atlases through open data, community based collaborative development, and free distribution of medical knowledge. Provides access to several 2D and 3D browser based tools.

Proper citation: Open Anatomy Project (RRID:SCR_022141) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/PlantGenomicsLab/gFACs

Software package provides comprehensive framework for evaluating, filtering, and analyzing gene models from range of input applications and preparing these annotations for formal publication or downstream analysis.

Proper citation: gFACs (RRID:SCR_022017) Copy   

•   Source: SciCrunch Registry

https://www.childrensmercy.org/childrens-mercy-research-institute/studies-and-trials/genomic-answers-for-kids/

Flagship initiative of Childrens Mercy Research Institute and Genomic Medicine Center in Kansas City. This research program is building pediatric data repository to facilitate search for answers and novel treatments.Goal is to collect genomic data and health information for 30,000 children and their families to create a database of genomes.

Proper citation: Genomic Answers for Kids (RRID:SCR_021840) Copy   

•   Source: SciCrunch Registry

https://kimlab.io/brain-map/atlas/

Labels provide resource to isolate and identify mouse brain anatomical structures. Cell type specific transgenic mice and an MRI atlas were used to adjust and further segment the labels. Highly segmented anatomical labels in the adult mouse brain common coordinate framework.

Proper citation: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas (RRID:SCR_022816) Copy   

•   Source: SciCrunch Registry

https://labsyspharm.github.io/dubportal

Provides integration and analysis of publicly available resources as well as newly collected transcriptomic data following deubiquitinating enzyme (DUB) knockout or inhibition to facilitate exploration of DUB function in oncology.

Proper citation: DUB Portal (RRID:SCR_022476) Copy   

•   Source: SciCrunch Registry

https://www.wikidata.org/wiki/Wikidata:WikiProject_Zika_Corpus

Web portal related to Zika virus, including metadata collection for academic publications on the topic, structured data ontology of terms, and integrated resources in the Wikidata platform.

Proper citation: WikiProject Zika Corpus (RRID:SCR_022079) Copy   

•   Source: SciCrunch Registry

https://www.syngene.com/software/genetools-automatic-image-analysis/

Software package includes comprehensive tools to provide full range of analysis for applications including chemiluminescence, chemifluorescence, fluorescence, colorimetric imaging and colony counting.

Proper citation: GeneTools (RRID:SCR_022505) Copy   

•   Source: SciCrunch Registry

https://drive.google.com/drive/folders/1K5oiXPcZDPT40irrZ_G2hZ86uNGA7CYZ?usp=sharing

Reference atlas for mice. Contains both average and annotation templates.

Proper citation: fMOST Atlas (RRID:SCR_022868) Copy   

•   Source: SciCrunch Registry

https://csharp.stanford.edu/

Center coordinates ideas and investments to advance and democratize access to Stanford cores, instrumentation, scientific and technical staff, allowing users to perform innovative, rigorous experiments.

Proper citation: Stanford University Community of Shared Advanced Research Platforms (RRID:SCR_022986) Copy   

•   Source: SciCrunch Registry

https://github.com/PedroBarbosa/Prepare_SplicingPredictors

Software tool as set of scripts to prepare the input for several sequence-based RNA splicing methods from VCF files.

Proper citation: Prepare_SplicingPredictors (RRID:SCR_023316) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/cardiac-diseases.html

Creative Biogene provides range of services and products to assist researchers in cardiac disease related mitochondria studies. Offers comprehensive testing services for evaluation of variety of cardiac diseases. Mitochondria focused testings and services with advantage of animal based models.

Proper citation: Creative Biogene Mitochondria and Cardiac Diseases (RRID:SCR_022083) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/cancer.html

Creative Biogene provides comprehensive range of services and products to assist researchers in cancer related mitochondria studies. Offers tests and services with advantage of cell based and animal based models.

Proper citation: Creative Biogene Mitochondrial Gene Mutations (RRID:SCR_022082) Copy   

•   Source: SciCrunch Registry

https://gillisweb.cshl.edu/Primate_MTG_coexp/

We aligned single-nucleus atlases of middle temporal gyrus (MTG) of 5 primates (human, chimp, gorilla, macaque and marmoset) and identified 57 consensus cell types common to all species. We provide this resource for users to: 1) explore conservation of gene expression across primates at single cell resolution; 2) compare with conservation of gene coexpression across metazoa, and 3) identify genes with changes in expression or connectivity that drive rapid evolution of human brain.

Proper citation: Gene functional conservation across cell types and species (RRID:SCR_023292) Copy   

•   Source: SciCrunch Registry