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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Michigan Genomics Initiative Resource Report Resource Website 1+ mentions |
Michigan Genomics Initiative (RRID:SCR_023556) | MGI | biobank, data or information resource, material storage repository, portal, project portal, service resource, storage service resource | Collaborative research effort among physicians, researchers, and patients at the University of Michigan with goal of combining patient electronic health record data with corresponding genetic data to gain novel biomedical insights. Biobank linking genotypes and electronic clinical records in Michigan Medicine patients. MGI participants agree to provide study team with access to EHR data for clinical information and biospecimen including blood or saliva. | combining patient electronic health record data, genetic data, genotypes, electronic clinical records | has parent organization: Michigan State University; Michigan; USA | PMID:36819667 | Restricted | SCR_023556 | 2026-08-29 11:28:00 | 6 | ||||||||
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DendroX Resource Report Resource Website 1+ mentions |
DendroX (RRID:SCR_023434) | 4d visualization software, data processing software, data visualization software, software application, software resource, source code | Web application for multi-level multi-cluster selections in dendrogram. Provides interactive visualization of dendrogram in which users can divide dendrogram at any level and into any number of clusters. | cluster, heatmap, visualization, dendrogram, cluster analysis, TypeScript | Second Military Medical University 2017JZ11; Shanghai Jiading District Health Commission 2020-ZD-01 |
Free, Available for download, Freely available | https://frlender.github.io/dendrox-app/ | SCR_023434 | 2026-08-29 11:28:27 | 1 | |||||||||
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roifile Resource Report Resource Website 1+ mentions |
roifile (RRID:SCR_023331) | software library, software resource, software toolkit | Software Python package to read, write, create, and plot ImageJ ROI format, an undocumented and ImageJ application specific format to store regions of interest, geometric shapes, paths, text, and whatnot for image overlays. | Python package, plot ImageJ ROIs, store regions of interest, geometric shapes, paths, text, image overlays | Free, Available for download, Freely available | SCR_023331 | 2026-08-29 11:27:57 | 1 | |||||||||||
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NuAire: LabGard ES NU-425-600E Biosafety Cabinet Resource Report Resource Website |
NuAire: LabGard ES NU-425-600E Biosafety Cabinet (RRID:SCR_023448) | instrument resource | Designed for laboratory safety, proper ergonomics, and energy efficiency.Models available from GMI are 2-ft. NU-425-200, 3-ft. NU-425-300, 4-ft. NU-425-400, and 6-ft. NU-425-600. LabGard NU-425 biosafety cabinets feature control system to control blower, lights, and outlets, Minihelic gauge that measures plenum performance, and Attenumount vibration control system for attenuation of sound and vibration. Cabinets are equipped with highly efficient, energy-saving motor/blower to increase filter life and cut electricity costs. | Instrument, equipment, USEDit, biosafety cabinet, NuAire, LabGard, energy saver, | is listed by: USEDit | Restricted | SCR_023448 | Type A2 Biosafety Cabinets, NuAire LabGard ES (Energy Saver) NU-425 Class II | 2026-08-29 11:28:27 | 0 | |||||||||
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Harmony Resource Report Resource Website 10+ mentions |
Harmony (RRID:SCR_023543) | data analysis software, data processing software, software application, software resource | Software tool designed by PerkinElmer for high content screening systems. Used to quantify complex cellular phenotypes. High content analysis software. | PerkinElmer, high content screening systems, quantify complex cellular phenotypes, | Restricted | SCR_023543 | Harmony High-Content Imaging and Analysis Software, Harmony 5.0, Harmony 5.1 | 2026-08-29 11:28:00 | 22 | ||||||||||
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Fasteris Next Generation Sequencing Services Resource Report Resource Website 1+ mentions |
Fasteris Next Generation Sequencing Services (RRID:SCR_023421) | service resource | Fasteris, the brand of Genesupport SA for all Life Science Services, provides Next Generation Sequencing and Sanger sequencing services.Offers customized approaches and consulting services at each step of your projects. | USEDit, ABRF, Life Science Services, Fasteris, Genesupport SA, Next Generation Sequencing service, Sanger sequencing service, |
is listed by: ABRF CoreMarketplace is related to: USEDit |
Restricted | ABRF_1710 | https://coremarketplace.org/?FacilityID=1710&citation=1 | SCR_023421 | Fasteris NGS Services | 2026-08-29 11:28:19 | 1 | |||||||
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GE Volume Viewer Resource Report Resource Website 1+ mentions |
GE Volume Viewer (RRID:SCR_023417) | data processing software, data visualization software, software application, software resource | Software tool to provide data 3D visualization and processing. Used for reading and comparing CT, MR, 3D X-ray, PET, and PET/CT datasets. | GE Healthcare, 3D image processing, 3D image visualization, 3D image | Restricted | SCR_023417 | Volume Viewer | 2026-08-29 11:28:19 | 2 | ||||||||||
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Research Center Jülich; Jülich; Germany Resource Report Resource Website 1+ mentions |
Research Center Jülich; Jülich; Germany (RRID:SCR_023416) | institution | One of the largest interdisciplinary research centers in Europe for inspiring science exchange from all over the world. It is member of the Helmholtz Association. | interdisciplinary research center, Europe, science exchange |
is parent organization of: BigBrain is parent organization of: DataLad is parent organization of: Julich-Brain Cytoarchitectonic Atlas |
SCR_023416 | Jülich Research Institute; Jülich; Germany, Forschungszentrum Jülich, Research Centre Jülich, Research Center Jülich; Jülich; Germany | 2026-08-29 11:28:27 | 1 | ||||||||||
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Slide-seq Pipeline Resource Report Resource Website 1+ mentions |
Slide-seq Pipeline (RRID:SCR_023379) | data analysis software, data processing software, software application, software resource | Software pipeline developed in collaboration with BRAIN Initiative Cell Census Network and BRAIN Initiative Cell Atlas Network. Supports processing of spatial transcriptomic data generated with Slide-seq commercialized as Curio Seeker assay. | single cell data, spatial transcriptomics, barcode correction, reads alignment, aligns reads to genome, |
is related to: BICCN has parent organization: Broad Institute is organization facet of: BRAIN Initiative Cell Atlas Network |
Hertz Graduate Fellowship ; National Science Foundation Graduate Research Fellowship Program ; NIH Early Independence Award ; NIH New Innovator Award ; Schmidt Fellows Program at the Broad Institute |
PMID:30923225 | Free, Available for download, Freely available | https://github.com/broadchenf/Slideseq/tree/master/BeadSeq%20Code | https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/slideseq | SCR_023379 | Slide-seq, slideseq, SlideSeq, SlideSeq Pipeline | 2026-08-29 11:28:27 | 2 | |||||
|
CaT-z Resource Report Resource Website |
CaT-z (RRID:SCR_023399) | software resource | Software tool for 3D tracking and automatic classification of rodent behavior. Used for acquisition, annotation, and automatic behavioral profile characterization of laboratory rodents' RGB-D videos. Utilizes video segmentation, tracking of body parts, and automated classification of behaviors through machine learning and computer vision methods. Setup uses low costing RGB-D cameras for tracking behaviors in various environments. Software includes GUI interfaces for video acquisition, annotation, and processing of behavioral data. Software is capable of automated behavior detection with only 30 minutes of annotated video. | 3D tracking, automatic classification, rodent behavior, behavioral analysis, individual rats, automated behavior detection, OpenBehavior | is listed by: OpenBehavior | Portugal National Funds | DOI:10.3758/s13428-020-01381-9 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/cat-z/ | SCR_023399 | Classification and Tracking in depth (z) | 2026-08-29 11:28:19 | 0 | ||||||
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QuestionPro Resource Report Resource Website 10+ mentions |
QuestionPro (RRID:SCR_023309) | software resource | Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions. | QuestionPro, Inc., design and host questionaires, survey creator, | Restricted | SCR_023309 | 2026-08-29 11:28:26 | 32 | |||||||||||
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Google Looker Studio Resource Report Resource Website 1+ mentions |
Google Looker Studio (RRID:SCR_023549) | data access protocol, software resource, web service | Former name Google Data Studio, is online tool for converting data into customizable informative reports and dashboards introduced by Google on March 15, 2016 as part of enterprise Google Analytics 360 suite. Online service for graphic data visualization. | Google Analytics 360 suite, graphic data visualization, converting data, reports and dashboards, data visualization | Free, Freely available | SCR_023549 | Google Data Studio, , Looker Studio | 2026-08-29 11:28:20 | 2 | ||||||||||
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PhysiCOOL Resource Report Resource Website 1+ mentions |
PhysiCOOL (RRID:SCR_023305) | PhysiCOOL | software library, software resource, software toolkit | Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects. | perform model calibration studies, PhysiCell, Calibration and Optimization, modeling projects, | Free, Available for download, Freely available | SCR_023305 | Physi Calibration and Optimization Of modeLing | 2026-08-29 11:28:18 | 1 | |||||||||
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NanoString GeoMx Tools Resource Report Resource Website 10+ mentions |
NanoString GeoMx Tools (RRID:SCR_023424) | data analysis software, data processing software, software application, software resource | Software package contains tools for analyzing data from NanoString GeoMx Digital Spatial Profiler. Provides functions to read, quality control and normalize starting from Nanostring DCC and PKC files generated from NanoString GeoMx DSP. Contains definition of NanoStringGeoMxSet class which inherits from Biobase’s ExpressionSet class and NanoStringRCCSet class. | NanoString GeoMx Digital Spatial Profiler, Nanostring DCC, PKC files, NanoString GeoMx DSP, Biobase ExpressionSet class, NanoStringRCCSet class, | Free, Available for download, Freely available | https://bioconductor.org/packages/GeomxTools/ | SCR_023424 | GeoMxTools | 2026-08-29 11:28:27 | 41 | |||||||||
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DeepCT Resource Report Resource Website 1+ mentions |
DeepCT (RRID:SCR_023302) | data analysis software, data processing software, software application, software resource | Software tool can learn complex interconnections of epigenetic features and infer unmeasured data from any available input. Can learn cell type-specific properties, build biologically meaningful vector representations of cell types, and utilize these representations to generate cell type-specific predictions of effects of non-coding variations in human genome. | interconnections of epigenetic features, infer unmeasured data, human genome | DOI:10.1101/2021.12.31.474623 | Free, Available for download, Freely available | SCR_023302 | 2026-08-29 11:27:57 | 1 | ||||||||||
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EraSOR Resource Report Resource Website |
EraSOR (RRID:SCR_023544) | data analysis software, data processing software, software application, software resource | Software Python tool for removing bias introduced from having overlapped samples between base GWAS data and target genotype data for Polygenic Risk Score analyses. Used for adjusting inflation in PRS prediction and association statistics in presence of sample overlap or close relatedness between GWAS and target samples. | removing bias, overlapped samples, GWAS data, target genotype data, Polygenic Risk Score, PRS prediction and association statistics, | DOI:10.1101/2021.12.10.472164 | Free, Available for download, Freely available | SCR_023544 | Erase Sample Overlap and Relatedness | 2026-08-29 11:28:28 | 0 | |||||||||
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Creative Biolabs Non-IgG Antibody Isotypes Services Resource Report Resource Website |
Creative Biolabs Non-IgG Antibody Isotypes Services (RRID:SCR_023640) | service resource | Provides high quality custom non-IgG antibody services. | USEDit, ABRF, custom non-IgG antibody services, |
is listed by: ABRF CoreMarketplace is related to: Creative Biolabs Core Facility is related to: USEDit has parent organization: Creative Biolabs |
ABRF_1776 | https://coremarketplace.org/?FacilityID=1776&citation=1 | SCR_023640 | Non-IgG Antibody Isotypes, CBL (Germany) Non-IgG Antibody Isotypes | 2026-08-29 11:28:21 | 0 | ||||||||
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Hamamatsu: NanoZoomer S360 Digital slide scanner Resource Report Resource Website 1+ mentions |
Hamamatsu: NanoZoomer S360 Digital slide scanner (RRID:SCR_023761) | instrument resource | NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S360 is ideal for use in hospitals and clinical laboratories. | USEDit, Hamamatsu, whole slide scanner, | is listed by: USEDit | Restricted | SCR_023761 | NanoZoomer S360 Digital slide scanner | 2026-08-29 11:28:30 | 4 | |||||||||
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Hamamatsu: NanoZoomer S210 Digital slide scanner Resource Report Resource Website 1+ mentions |
Hamamatsu: NanoZoomer S210 Digital slide scanner (RRID:SCR_023760) | instrument resource | NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S210 provides high performance capable of handling large number of slides. | USEDit, Hamamotsu, whole slide scanner, glass slides, large number of slides | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023760.pdf | SCR_023760 | NanoZoomer S210 Digital slide scanner | 2026-08-29 11:28:23 | 3 | ||||||||
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Hamamatsu: FDSS-GX Kinetic Plate Imager Resource Report Resource Website |
Hamamatsu: FDSS-GX Kinetic Plate Imager (RRID:SCR_023759) | instrument resource | Kinetic plate imager optimized for 96-, 384-, and 1536-well for high throughput screening, enabling whole microplate imaging and simultaneous injections to all wells. System achieves high sensitivity imaging with qCMOS sensor, and highly accurate and repeatable micro-dispensing by adopting 1536 ch dispensing unit capable of dispensing variable volumes. By combining optional parts, robot free semi automation system can be built according to user's purpose. | USEDit, Hamamatsu Photonics K.K., kinetic plate imager, high throughput screening, whole microplate imaging, wells simultaneous injections, | Restricted | SCR_023759 | FDSS-GX Kinetic Plate Imager | 2026-08-29 11:28:30 | 0 |
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