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https://www.eppendorf.com/ie-en/eShop-Products/Liquid-Handling/Manual-Pipetting-Dispensing/Eppendorf-Research-plus-p-3123000055

Mechanical and autoclavable, manual, air cushion pipette for accurate, ergonomic pipetting of aqueous solutions.

Proper citation: Eppendorf: Research plus 20 ��� 200 ��L yellow 1 channel pipette (RRID:SCR_023464) Copy   

•   Source: SciCrunch Registry

https://www.cytivalifesciences.com/en/us/shop/chromatography/chromatography-systems/akta-pure-p-05844

Chromatography system for purification in research applications. Allows for customization due to its modular design with flow rate. Available with flow rate of up to 25 mL/min or flow rate of up to 150 mL/min. Offers more than 20 hardware options for custom system, including new UV monitor.Includes Air sensor L9;CELL 2 U KPL;Conductivity monitor C9n Cpl;Injection valve V9-Inj;Instrument control unit, I9, Äkta pure; Mixer M9;Pressure monitor R9-2 with pump restrictor; Pump P9 Cpl 2x; UV Monitor U9-L Cpl;Fraction collector F9-R, Cytiva, CAT# 29011362;Superdex 200 increase 10/300 GL, Cytiva, CAT# 28-9909-44.

Proper citation: Cytiva: AKTA pure 25 L chromatography system (RRID:SCR_023461) Copy   

•   Source: SciCrunch Registry

https://www.vilber.com/company/

Life science company that develops and manufacture imaging and analyzing systems for fluorescence, chemiluminescence and bioluminescence applications.

Proper citation: Vilber (RRID:SCR_023580) Copy   

•   Source: SciCrunch Registry

http://jupyterlab.github.io/jupyterlab/

Software extensible environment for interactive and reproducible computing, based on Jupyter Notebook and Architecture. Next generation user interface for Project Jupyter offering all familiar building blocks of classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in flexible and powerful user interface. Can be extended using npm packages that use our public APIs., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: JupyterLab (RRID:SCR_023339) Copy   

•   Source: SciCrunch Registry

https://www.nanoentek.com/theme/nanont2_en/shop/02/product01_view.php?it_id=1547538993

Bench top size cell counter that is designed to count cells and verify viability accurately and precisely, using standard trypan blue technique and provides image analysis for cell counting.

Proper citation: NanoEntek: EVE Automated Cell Counter (RRID:SCR_023459) Copy   

•   Source: SciCrunch Registry

https://pillow.readthedocs.io/en/stable/

Software Python Imaging Library adds image processing capabilities to your Python interpreter. This library provides extensive file format support, efficient internal representation, and image processing capabilities. Core image library is designed for fast access to data stored in few basic pixel formats. It should provide solid foundation for general image processing tool.

Proper citation: pillow (RRID:SCR_023337) Copy   

•   Source: SciCrunch Registry

https://github.com/imagej/pyimagej

Software provides set of wrapper functions for integration between ImageJ2 and Python. Supports original ImageJ API and data structures. Used to combine ImageJ and ImageJ2 with other tools available from Python software ecosystem, including NumPy, SciPy, scikit-image, CellProfiler, OpenCV, ITK and many more.

Proper citation: PyImageJ (RRID:SCR_023336) Copy   

•   Source: SciCrunch Registry

https://lifesciences.tecan.com/microplate-washers-hydrospeed?p=tab--1

Advanced plate washer, designed for quick, parallel washing of entire 96- and 384-well plates. This avoids time differences between wells for uniform results. Provides full control of wash power for optimized washing of cells, beads and ELISAs. Equipped with 96 and 384 indexing wash head and optimized magnetic carriers.

Proper citation: Tecan: HydroSpeed plate washer (RRID:SCR_023457) Copy   

•   Source: SciCrunch Registry

https://github.com/tobiasrausch/alfred

Web application as interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencingas.

Proper citation: Alfred (RRID:SCR_023354) Copy   

•   Source: SciCrunch Registry

https://github.com/neurobio-hiroshima/WRAQ

Open source microcontroller based system for wheel running activity in mice.Used to track circadian rhythms of rodents using microcontroller, powered by lithium polymer battery, and surveys exercise activity for up to 30 days. Data can be stored on microSD card or using online server using WiFi connection. Python software provides system interface with ActogramJ to analyze chronobiological aspects of data.Repository includes guide for installing integrated developmental environment and dependent libraries for building and setting up WRAQ systems - WRAQ and WRAQ-Wifi. WRAQ and WRAQ-WiFi are based on Adafruit Adalogger and DFRobot FireBeetle ESP32 connected to 4- and 8-bit binary counters receiving signal from reed switch attached to 5-inch flying saucer respectively.

Proper citation: Wheel Running Activity acQuisition (RRID:SCR_023353) Copy   

•   Source: SciCrunch Registry

https://blobtoolkit.genomehubs.org/blobtools2/

Software suite for identifying and isolating non-target data in draft and publicly available genome assemblies. Used to process assembly, read and analysis files for fully reproducible interactive exploration in browser-based Viewer. Used for interactive quality assessment of genome assemblies .BlobTools2 is reimplementation of BlobTools, written in Python 3 with fully modular design to make creating new datasets and adding additional analysis types easier.

Proper citation: BlobTools2 (RRID:SCR_023351) Copy   

•   Source: SciCrunch Registry

https://www.diagenode.com/en/categories/bioruptor-shearing-device

Sonication system for optimal shearing of biological and chemical samples.

Proper citation: Diagenode: Bioruptor (RRID:SCR_023470) Copy   

•   Source: SciCrunch Registry

https://rth.dk/resources/risearch/

Software tool for prediction of RNA–RNA, RNA–DNA, and DNA–DNA interactions. Both RIsearch1 and RIsearch2 enable quick localisation of potential near complementary interactions between given query and target sequences. RIsearch1 performs computation with whole sequences. RIsearch2 focuses on perfect complementary seed regions and extends them on both ends. User defined seed and extension constraints makes RIsearch2 applicable to all kinds of interaction predictions (e.g., siRNA and Cas9–gRNA off-target predictions).

Proper citation: RIsearch (RRID:SCR_023503) Copy   

•   Source: SciCrunch Registry

https://www.promega.com/resources/software-firmware/glomax-systems/glomax-discover-system-software/

System includes firmware and plate reader software for reading absorbance, fluorescence, or luminescence in 96-well plates.

Proper citation: GloMax Discover System Software and Firmware (RRID:SCR_023469) Copy   

•   Source: SciCrunch Registry

https://kosis.kr/

Republic of Korea e-Government platform for major domestic, international and North Korean statistics. Web service provides official statistics produced by statistical agencies covering more than 500 subject matters as well as the latest data on international finance and economy from international organizations i.e. IMF, World Bank, OECD.

Proper citation: Korea Statistical Information Service (RRID:SCR_023565) Copy   

•   Source: SciCrunch Registry

https://omsf.io/

Nonprofit organization with mission to advance molecular sciences by building open source software and sustainable communities for research software development. Focuses on working with hosted projects to support their software development and provide operational support, while also pursuing own community-service and community-building projects. Uses fiscal sponsorship as business model available to nonprofit organizations to assemble resources, provide support and advance open source projects in molecular sciences aligned with charitable purpose and general public interest.

Proper citation: Open Molecular Software Foundation (RRID:SCR_023440) Copy   

•   Source: SciCrunch Registry

https://github.com/lucadellasantina/ObjectFinder

Software image analysis package for 3D object recognition in volumetric images developed for neuroscience research purposes. MATLAB application to recognize small structures in large volumetric image, plot their statistics and perform quantitative analysis such as nearest neighbor and colocalization analysis. Used to detect fluorescently labeled synapses in neuronal image stacks acquired using confocal or super resolution microscopes.

Proper citation: ObjectFinder (RRID:SCR_023319) Copy   

•   Source: SciCrunch Registry

https://neuromorpho.org/xyz2swc/ui/

Web service that converts all 30 reconstruction formats (and 65 variations) described in scientific literature into SWC standard. Service is available open-source through user-friendly browser interface and Application Programming Interface.

Proper citation: xyz2swc (RRID:SCR_023317) Copy   

•   Source: SciCrunch Registry

https://github.com/PedroBarbosa/DeepIntronic_Benchmark

Repository of code, data, and documentation to reproduce computational evaluation performed to identify the best tools/models to predict genetic variation in deep intronic regions of human genome.

Proper citation: Benchmark of human deep intronic variation (RRID:SCR_023315) Copy   

•   Source: SciCrunch Registry

https://github.com/PedroBarbosa/VETA

Software tool that analyses performance of several variant prediction methods at different levels. Used to benchmark variant effect predictors from VCF files.

Proper citation: Variant Prediction Tools Evaluation (RRID:SCR_023314) Copy   

•   Source: SciCrunch Registry