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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Barbara A. Mikulski Archive for Space Telescopes Resource Report Resource Website 10+ mentions |
Barbara A. Mikulski Archive for Space Telescopes (RRID:SCR_023137) | data repository, service resource, storage service resource | Astronomical data archive focused on optical, ultraviolet, and near infrared. Used for maximizing scientific accessibility and productivity of astronomical data. MAST hosts data from over dozen missions like Webb, Hubble, TESS, Kepler, and in the future Roman. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17909, DOI:10.17616/R3K897, r3d100010403 | https://doi.org/10.17909, https://dx.doi.org/10.17909, http://doi.org/10.17616/R3K897, https://doi.org/10.17616/R3K897 | SCR_023137 | Barbara A. Mikulski Archive for Space Telescopes | 2026-08-29 11:28:16 | 19 | ||||||||
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University of Toledo Department of Neurosciences Resource Report Resource Website |
University of Toledo Department of Neurosciences (RRID:SCR_007487) | UT Department of Neuroscience | data or information resource, department portal, organization portal, portal | The Department of Neurosciences at the University of Toledo Health Sciences Campus is highly committed to advancing the state of knowledge of nervous system structure and function through a tripartite mission of innovative research, state-of-the-art teaching methods, and dedicated service to the broader academic and surrounding communities. | has parent organization: University of Toledo; Ohio; USA | nif-0000-02112 | SCR_007487 | 2026-08-29 11:28:17 | 0 | ||||||||||
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NicheNet Resource Report Resource Website 50+ mentions |
NicheNet (RRID:SCR_023158) | simulation software, software application, software resource | Software tool as R implementation of NicheNet method to predict active ligand-target links between interacting cells. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest. | predict ligand-receptor interactions, intercellular communication, predict active ligand target interactions, interacting cells prediction, | Flemish Government ; Research Foundation—Flanders |
PMID:31819264 | Free, Available for download, Freely available | SCR_023158 | 2026-08-29 11:27:55 | 73 | |||||||||
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Lonza: 4D Nucleofector X Unit Resource Report Resource Website 10+ mentions |
Lonza: 4D Nucleofector X Unit (RRID:SCR_023155) | instrument resource | One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats. | Instrument, equipment, Lonza, USEDit, electroporation based transfection, nucleofection, transfer of nucleic acids into cells, | is listed by: USEDit | SCR_023155 | 4D Nucleofector X Unit, 4D Nucleofector X Unit Amaxa technology | 2026-08-29 11:28:24 | 10 | ||||||||||
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Thermo Fisher: Cytomat 10 Hotel Ambient Storage Resource Report Resource Website |
Thermo Fisher: Cytomat 10 Hotel Ambient Storage (RRID:SCR_023273) | instrument resource | Storage used for high capacity random access storage (210 SBS microplates) at ambient conditions. The Cytomat 10 Hotel (PH) offers multiple transfer positions, dual access point (DAP) and as combined benchtop-under bench solution, it allows flexible placement within the laboratory. | ThermoFisher Scientific, ambient conditions storage, microplate storage, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023273 | 2026-08-29 11:28:18 | 0 | ||||||||||
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QuantPrime Resource Report Resource Website 100+ mentions |
QuantPrime (RRID:SCR_015498) | software resource, web application | Fully automated tool for primer pair design in small- to large-scale real-time reverse transcription qPCR analyses. It offers design and specificity checking with highly customizable parameters and is available for use with publicly available eukaryotic transcriptomes. | primer design, primer pair design, rt-qpcr, reverse transcription qpcr | is listed by: SoftCite | DOI:10.1186/1471-2105-9-465 | Acknowledgement requested, Available as a web application, Available as a desktop application | SCR_015498 | 2026-08-29 11:28:24 | 162 | |||||||||
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Samurai Graph: A highly functional and user-friendly graph plotter Resource Report Resource Website |
Samurai Graph: A highly functional and user-friendly graph plotter (RRID:SCR_013594) | Samurai Graph | data processing software, data visualization software, software application, software resource | Samurai Graph is a highly functional and user-friendly graph plotter. It can plot the graphs from the scalar to vector type 2-dimensional data. Samurai Graph is an open source development project, released under the GNU Lesser General Public License (LGPL). Samurai Graph is Java-based and platform-independent application. It runs on most major operating systems including MS-Windows, Linux, MacOS X, FreeBSD., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | binary executable | has parent organization: RIKEN Brain Science Institute | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00374 | SCR_013594 | 2026-08-29 11:28:24 | 0 | ||||||||
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ModFit LT Resource Report Resource Website 100+ mentions |
ModFit LT (RRID:SCR_016106) | data processing software, data visualization software, software application, software resource | Modeling software for flow cytometry histograms. Models for cell-tracking dye studies and synchronized cell lines are built right into the software. | flow, cytometry, histogram, model, graph, cell, tracking, dye, cell line | is listed by: SoftCite | Commercially available, Available for purchase, Trial available | SCR_016106 | Verity Software House ModFit LT | 2026-08-29 11:28:17 | 154 | |||||||||
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Abbiotec Resource Report Resource Website 10+ mentions |
Abbiotec (RRID:SCR_013596) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152243 | SCR_013596 | Abbiotec LLC | 2026-08-29 11:27:55 | 25 | |||||||||||
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ERMA: Automatic blood cell counter PCE-210N Resource Report Resource Website |
ERMA: Automatic blood cell counter PCE-210N (RRID:SCR_023148) | instrument resource | Automatic cell counting instrument. Used to count blood cells. | Instrument, Equipment, USEDit, Automatic cell counting, count blood cells, | is listed by: USEDit | SCR_023148 | Automatic blood cell counter PCE-210N | 2026-08-29 11:28:16 | 0 | ||||||||||
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Human Tumor Atlas Network Resource Report Resource Website 10+ mentions |
Human Tumor Atlas Network (RRID:SCR_023364) | HTAN | atlas, data or information resource, disease-related portal, portal, topical portal | HTAN is National Cancer Institute funded Cancer Moonshot initiative to construct 3-dimensional atlases of dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease.Provides three dimensional atlases of cancer transitions for diverse set of tumor types. Efforts to map healthy organs and previous large-scale cancer genomics approaches focused on bulk sequencing at single point in time. Data portal for Human Tumor Atlas Network. Data available on HTAN Portal is open access. Certain data types with potential for re-identification are available in restricted access through dbGAP. | Three dimensional atlases, cancer transitions, diverse set of tumor types, map healthy organs, cancer genomics approaches, bulk sequencing at single point in time, data, precancerous lesions to advanced disease, | cancer | National Cancer Institut Cancer Moonshot Initiative | PMID:32302568 | Free, Freely available | SCR_023364 | 2026-08-29 11:28:19 | 42 | |||||||
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Elicit Resource Report Resource Website 10+ mentions |
Elicit (RRID:SCR_023362) | software resource, web application | Research assistant using language models like GPT-3 to automate parts of researchers’ workflows. Main workflow is Literature Review. If you ask question, Elicit will show relevant papers and summaries of key information about those papers in easy-to-use table. | Literature Review, automate parts of researchers’ workflows, show relevant papers, summaries of paper key information, | Restricted | SCR_023362 | Elicit: The AI Research Assistant | 2026-08-29 11:28:26 | 13 | ||||||||||
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Adobe Acrobat Pro Resource Report Resource Website |
Adobe Acrobat Pro (RRID:SCR_023361) | software resource | Productivity and collaboration PDF solution, combining Acrobat desktop software, mobile scan app, signature app and Acrobat Reader mobile app enhanced with premium mobile features and premium Document Cloud services. | pdf, Acrobat desktop, mobile scan app, signature app, Acrobat Reader mobile app, Document Cloud | Restricted | SCR_023361 | 2026-08-29 11:28:26 | 0 | |||||||||||
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openMINDS SANDS metadata model Resource Report Resource Website 1+ mentions |
openMINDS SANDS metadata model (RRID:SCR_023498) | openMINDS_SANDS, openMINDS SANDS | data or information resource, narrative resource, standard specification | One of the metadata models of openMINDS metadata framework. Composed of modular metadata schemas for spatial anchoring of neuroscience data structures, including brain atlas definitions. | open science, metadata schema, graph metadata model |
is related to: openMINDS metadata framework is related to: openMINDS controlledTerms metadata model |
European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA1 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA2 785907; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA3 945539; European Union’s Research and Innovation Program Horizon Europe - EBRAINS 2.0 101147319; Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL) |
Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/SANDS.html | https://github.com/HumanBrainProject/openMINDS_SANDS | SCR_023498 | 2026-08-29 11:27:59 | 3 | ||||||
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Charite University and Berlin Institute for Health Research Central Biobank Core Facility Resource Report Resource Website |
Charite University and Berlin Institute for Health Research Central Biobank Core Facility (RRID:SCR_023495) | ZeBanC | access service resource, biobank, core facility, material storage repository, service resource, storage service resource | Integrated healthcare biobank that operates under certified conditions and strict SOPs. Enables biomedical and translational researchers to perform their analyses using high quality biospecimens and data to generate reliable and reproducible research data. Core offers modular biobanking portfolio that can cover workflow from blood collection to storage, including all pre-analytical steps and their documentation. Offers spectrum of additional services ranging from DNA/RNA extraction and virtual microscopy to entire management of sample and data flow for national and international research consortia. Provides secure conventional and automated storage of samples at various temperatures as well as secure data management. | USEDit, ABRF, integrated healthcare biobank, biobank, biospecimens, data, data management, data storage, blood collection, DNA/RNA extraction, virtual microscopy |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
Open | ABRF_563 | https://coremarketplace.org/?FacilityID=563&citation=1 | SCR_023495 | , Charite/BIH (ZeBanC), Charite - Central Biobank Charite/BIH (ZeBanC), Central Biobank of the Charite | 2026-08-29 11:28:27 | 0 | ||||||
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vhlab-TwoPhoton-matlab Resource Report Resource Website 1+ mentions |
vhlab-TwoPhoton-matlab (RRID:SCR_023369) | data analysis software, data processing software, software application, software resource | Software VH Lab tools for analysis of calcium imaging data. Allows selection of ROIs and extraction of time series data from raster-scanned, line-scanned, or CCD images, written in Matlab. | Matlab, calcium imaging data analysis, calcium imaging, images, time series data extraction, | PMID:18946471 | Free, Available for download, Freely available | SCR_023369 | Van Hooser lab fluorescent time-series analysis software | 2026-08-29 11:28:19 | 2 | |||||||||
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MetGENE Resource Report Resource Website 1+ mentions |
MetGENE (RRID:SCR_023402) | data access protocol, software resource, web service | Web tool identifies associations between genes and metabolites that are biosynthesized, metabolized, or transported by proteins coded by genes. Gene centric metabolomics information retrieval tool. Knowledge based, gene centric data aggregator that hierarchically retrieves information about genes, their related pathways, reactions,metabolites, and metabolomic studies from standard data repositories under one dashboard to enable ease of access through centralization of relevant information. Information can be contextualized by filtering along species, anatomy tissue and disease or phenotype. | Gene centric metabolomics information retrieval, genes and metabolites associations identification, gene centric data aggregator, | has parent organization: University of California at San Diego; California; USA | NIH Common Funds | Free, Freely available | https://bdcw.org/MW/docs/MetGENETutorial.pdf | SCR_023402 | 2026-08-29 11:28:27 | 1 | ||||||||
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HetMatPy Resource Report Resource Website 1+ mentions |
HetMatPy (RRID:SCR_023409) | data analysis software, data processing software, network analysis software, software application, software resource | Software Python package for matrix storage and operations on hetnets. Enables identifying relevant network connections between set of query nodes. | Hetionet, matrix storage, operations on hetnets, hetnets, heterogeneous networks, | Gordon and Betty Moore Foundation ; NCI R01 CA237170; NHGRI R01 HG010067 |
PMID:36711546 | Free, Available for download, Freely available | SCR_023409 | hetmatpy | 2026-08-29 11:27:58 | 1 | ||||||||
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Eppendorf: Research plus 100-1000 uL 1 channel pipette Resource Report Resource Website |
Eppendorf: Research plus 100-1000 uL 1 channel pipette (RRID:SCR_023466) | instrument resource | Eppendorf manual, autoclavable, air-cushion pipette for accurate ergonomic pipetting of aqueous solutions. | Eppendorf, 100-1000 uL, one channel pipette, pipette, manual, autoclavable, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023466 | Eppendorf Research® plus 100-1000 uL 1-channel pipette | 2026-08-29 11:28:27 | 0 | |||||||||
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Eppendorf: Research plus 2 ��� 20 ��L yellow 1 channel pipette Resource Report Resource Website |
Eppendorf: Research plus 2 ��� 20 ��L yellow 1 channel pipette (RRID:SCR_023465) | instrument resource | Mechanical and autoclavable, manual, air cushion pipette for accurate, ergonomic pipetting of aqueous solutions. | Eppendorf, 2 – 20 µL, yellow tips, one channel pipette, autoclavable, manual, pipette, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023465 | , Eppendorf Research® plus 2 – 20 µL yellow 1-channel pipette | 2026-08-29 11:27:59 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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