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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ot-tools Resource Report Resource Website 1+ mentions |
ot-tools (RRID:SCR_017191) | data analysis software, data processing software, software application, software resource | Software tools for analysis of cellular cryo-ET data. | analysis, cellular, cryo-ET, data | Free, Available for download, Freely available | SCR_017191 | 2026-09-12 12:58:49 | 5 | |||||||||||
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Gulbenkian Institute of Science Bioinformatics and Computational Unit Core Facility Resource Report Resource Website |
Gulbenkian Institute of Science Bioinformatics and Computational Unit Core Facility (RRID:SCR_017190) | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | IGC Core in Oeiras, Portugal, promotes use of computational methods in biological research, through training and development of resources and materials, supports biological data analysis using computational methods, conducts research and development in bioinformatics, in particular in data flows, data warehousing and data analyses. | bioinformatics, consulting, data, analysis, management, repository | Open | SCR_017190 | Bioinformatics and Computational Unit, IGC, core facility, Instituto Gulbenkian de Ciencia, Gulbenkian Institute of Science | 2026-09-12 12:58:49 | 0 | ||||||||||
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University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility Resource Report Resource Website |
University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility (RRID:SCR_017194) | MRC Institute of Genetics and Molecular Medicine BAC | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, software resource, training service resource | Core provides advice, training, provision of computational tools and collaborative expertise to all IGMM researchers. | bioinformatics, data, analysis, sequencing | has parent organization: University of Edinburgh; Scotland; United Kingdom | Restricted | SCR_017194 | The University of Edinburgh, Bioinformatics Analysis, College of Medicine and Veterinary Medicine, College of Medicine & Veterinary Medicine, Core Facility, Institute of Genetics and Molecular Medicine, IGMM, MRC | 2026-09-12 12:58:49 | 0 | ||||||||
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Genome Institute of Singapore Scientific and Research Computing Core Facility Resource Report Resource Website |
Genome Institute of Singapore Scientific and Research Computing Core Facility (RRID:SCR_017193) | GIS Scientific and Research Computing | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource, software resource | Core provides research computing resources including bioinformatics, application development, data management and IT infrastructure to support next generation sequencing technologies, human genotyping, high throughput screening and computational biology researchers. | bioinformatics, genomic, data, management, next, generation, sequencing, genotyping, analysis | Open | SCR_017193 | Core Facility, GIS, Scientific & Research Computing, Scientific and Research Computing, Genome Institute of Singapore | 2026-09-12 12:58:49 | 0 | |||||||||
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University of Cambridge Centre for Trophoblast Research Bioinformatics Core Facility Resource Report Resource Website |
University of Cambridge Centre for Trophoblast Research Bioinformatics Core Facility (RRID:SCR_017192) | CTR Bioinformatics Core Facility | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource, training service resource | Core provides assistance with experimental design, RNA sequencing, whole genome and targeted sequencing, methylation sequencing, protein alignment, microscopy image analysis, and training. | bioinformatics, sequencing, RNA, genome, methylation, protein, alignment, data, image, analysis | has parent organization: University of Cambridge; Cambridge; United Kingdom | Restricted | SCR_017192 | Center for Trophoblast Research, Centre for Trophoblast Research, Bioinformatics Core Facility, University of Cambridge | 2026-09-12 12:58:49 | 0 | ||||||||
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BZ Analyzer software Resource Report Resource Website 10+ mentions |
BZ Analyzer software (RRID:SCR_017205) | data analysis software, data processing software, software application, software resource | Software tool as analysis application BZ-H1A by Keyence, Japan for fluorescence microscope BZ-8100 series. | analysis, BZH1A, Keyence, fluorescence, microscope | Available for purchase | SCR_017205 | 2026-09-12 12:58:49 | 14 | |||||||||||
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Mayo Clinic Rochehster Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Mayo Clinic Rochehster Bioinformatics Core Facility (RRID:SCR_017161) | Mayo Clinic Bioinformatics Core | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource | Core assists in genomics, proteomics and metabolomics data acquisition, management, analyses and interpretation to Mayo investigators. Participates in Basic science research, Clinical trials, Population health, and Translational science to execute analytical workflows and manage large omics data sets. Provides support to Mayo Clinic Center for Individualized Medicine and Mayo Clinic Cancer Center. Has its academic home in Department of Health Sciences Research within Division of Biomedical Statistics and Informatics. | bioinformatics, data, acquisition, management, analysis, genomics, proteomics, metabolomics | has parent organization: Mayo Clinic | Restricted | SCR_017161 | Bioinformatics Core, Division of Biomedical Statistics and Informatics, Rochehster, Mayo Clinic, Core Facility | 2026-09-12 12:58:49 | 2 | ||||||||
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Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility Resource Report Resource Website |
Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility (RRID:SCR_017160) | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource, software resource | Core provides assistance in primary analysis of sequencing data and other large scale biocomputing. For our internal users we host extensive web services, workflows and customized tools that help with data management, visualizations, standardized analyses and data sharing. | bioinformatics, biocomputing, sequencing, data, omics, analysis, visualization, management | has parent organization: Max Planck Institiute of Immunobiology and Epigenetics; Freiburg; Germany | Restricted | SCR_017160 | , Bioinformatics Facility, Core Facility, Bioinformatics Core Facility, Epigenetics, Max Planck Institiute of Immunobiology | 2026-09-12 12:58:49 | 0 | |||||||||
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CytExpert Software Resource Report Resource Website 500+ mentions |
CytExpert Software (RRID:SCR_017217) | data acquisition software, data analysis software, data processing software, software application, software resource | Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter. | control, instrument, data, collection, analysis, CytoFLEX Platform, Beckman Coulter, flow, cytometry |
is listed by: OMICtools works with: Beckman Coulter: CytoFLEX LX Flow Cytometer |
OMICS_30185 | https://www.beckman.fr/flow-cytometry/instruments/cytoflex/software | SCR_017217 | 2026-09-12 12:58:50 | 900 | |||||||||
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PennAI Resource Report Resource Website |
PennAI (RRID:SCR_017215) | data analysis software, data management software, data processing software, data visualization software, software application, software resource | Open source software tool to leverage supervised machine learning techniques to analyze data. Can assist with tasks such as choosing appropriate models for data. Data science assistant for generating results from large and complex data problems. | Supervised, machine, learning, technique, data, mining, storing, analysis, visualizationn, artificial, intelligence | has parent organization: University of Pennsylvania; Philadelphia; USA | Free, Available for download, Freely available | http://pennai.org/, https://epistasislab.github.io/pennai/ | SCR_017215 | Accessible artificial intelligence from University of Pennsylvania | 2026-09-12 12:58:50 | 0 | ||||||||
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University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility Resource Report Resource Website |
University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility (RRID:SCR_017173) | CGAT | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | Core provides genomics training, as well as assistance in next generation sequencing analyses. | bioinformatics, genomics, next, generation, sequencing, data, analysis | has parent organization: University of Oxford; Oxford; United Kingdom | Restricted | SCR_017173 | Medical Sciences Division, Computational Genomics: Analysis and Training Core Facility, CGAT, University of Oxford, Computational Genomics Analysis and Training Core Facility | 2026-09-12 12:58:49 | 0 | ||||||||
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Montreal Clinical Research Bioinformatics Core Facility Resource Report Resource Website |
Montreal Clinical Research Bioinformatics Core Facility (RRID:SCR_017176) | IRCM BIF, BIF | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | Core to support scientists within and outside IRCM in analysis of biological and clinical data, in particular high throughput genomic data. Operating on collaborative basis and paid services. Provides assistance with Data analysis for RNA-Seq, ChIP-Seq, RIP-Seq, DNA methylation, DNA-Seq, targeted sequencing of rRNAs, microarrays, customized training courses. | bioinformatics, genomic, omics, data, analysis, RNA-Seq, CHIP-Seq, RIP-Seq, DNA, methylation, DNA-Seq, rRNA, microarray | Restricted | SCR_017176 | , Institute of Clinical Research of Montreal, IRCM, Bioinformatics Core Facility, BIF | 2026-09-12 12:58:49 | 0 | |||||||||
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Centre for Genome Regulation Bioinformatics Core Facility Resource Report Resource Website |
Centre for Genome Regulation Bioinformatics Core Facility (RRID:SCR_017145) | Biocore CRG | access service resource, core facility, service resource, software resource, training resource | Provides services of consultation and data analysis, with focus on Next Generation Sequencing and other high throughput experiments, software and database development, and training in basic and advanced bioinformatics techniques. Services provided for fee to support collaborative grant funded investigations. | bioinformatics, NGS, consultation, data, analysis, next, generation, sequencing | has parent organization: Centre for Genomic Regulation; Barcelona; Spain | Restricted | SCR_017145 | Bioinformatics Core, , Core Facility, Centre for Genomic Regulation, Biocore, CRG | 2026-09-12 12:58:49 | 0 | ||||||||
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OMTools Resource Report Resource Website 1+ mentions |
OMTools (RRID:SCR_017143) | alignment software, data analysis software, data processing software, data visualization software, image analysis software, software application, software resource, software toolkit | Software package for optical mapping data processing, analysis and visualization. Used to handle and explore large scale optical mapping profiles. | optical, mapping, data, processing, analysis, visualization, large, scale, profile, phylogenesis | is listed by: SoftCite | Chinese University of Hong Kong ; Food and Health Bureau of the Hong Kong Special Administrative Region ; HKSAR Research Grants Council ; Lee Hysan Foundation ; Lo Kwee-Seong Biomedical Research Fund |
PMID:28505226 | Free, Available for download, Freely available | SCR_017143 | 2026-09-12 12:58:49 | 2 | ||||||||
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TopScan Resource Report Resource Website 100+ mentions |
TopScan (RRID:SCR_017141) | data analysis software, data processing software, software application, software resource | Software suite as top view based behavior analysis system by CleverSys Inc. Uses animal body parts to provide behavior analysis results. Used in experiments with animal tracking task. | top, view, behavior, analysis, system, CleverSys Inc., animal, body, part, track, detect | SCR_017141 | TopScan Suite | 2026-09-12 12:58:49 | 104 | |||||||||||
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SCÅTTER Resource Report Resource Website 50+ mentions |
SCÅTTER (RRID:SCR_017271) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Software JAVA based application for basic analysis of Small Angle X-ray Scattering datasets. | analysis, data, dataset, small, angle, X ray, scattering, SAXS, BIOISIS | Department of Energy Office of Science Integrated Diffraction Analysis Technologies ; National Cancer Institute Structural Cell Biology of DNA Repair Machines ; National Institute of General Medical Sciences project MINOS |
Restricted | https://bl1231.als.lbl.gov/scatter/ | SCR_017271 | 2026-09-12 12:58:50 | 98 | |||||||||
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Protein Cross-Linking Database Resource Report Resource Website 1+ mentions |
Protein Cross-Linking Database (RRID:SCR_021027) | ProXL, proxl, Protein XL | data access protocol, data or information resource, database, software resource, web service | Web application and database designed for sharing, visualizing, and analyzing protein cross-linking mass spectrometry data with emphasis on structural analysis and quality control. Includes public and private data sharing capabilities, project based interface designed to ensure security and facilitate collaboration among multiple researchers. Used for private collaboration and public data dissemination. | Protein cross-linking, mass spectrometry data, analysis, visualization, sharing, structural analysis, quality control, private collaboration, public data dissemination |
uses: Kojak has parent organization: University of Washington; Seattle; USA |
NIGMS P41 GM103533; University of Washington Proteomics Resource |
PMID:27302480 | Free, Available for download, Freely available | https://github.com/yeastrc/proxl-web-app | SCR_021027 | Protein XL Database | 2026-09-12 12:59:49 | 5 | |||||
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DichroWeb Resource Report Resource Website 50+ mentions |
DichroWeb (RRID:SCR_018125) | analysis service resource, data access protocol, data analysis service, production service resource, service resource, software resource, web service | Web server for analysis of protein circular dichroism spectra. Provides access to circular dichroism secondary structure calculation algorithms and reference databases. Used in analysis of protein secondary structures. | Analysis, protein, circular dichroism spectra, secondary structure, reference database, algorithm, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: University of London; London; United Kingdom |
BBSRC | PMID:17896349 PMID:15215473 |
Restricted | biotools:dichroweb | https://bio.tools/dichroweb | SCR_018125 | 2026-09-12 12:58:57 | 90 | ||||||
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EMBL-EBI COVID-19 Portal Resource Report Resource Website 10+ mentions |
EMBL-EBI COVID-19 Portal (RRID:SCR_018337) | data or information resource, data repository, database, disease-related portal, portal, service resource, storage service resource, topical portal | EMBL-EBI portal to enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets submitted to EMBL-EBI and other major centers for biomedical data. Used to facilitate data sharing and analysis to accelerate coronavirus research. The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research. EMBL-EBI and partners have set up the COVID-19 Data Portal, which will bring together relevant datasets submitted to EMBL-EBI and other major centres for biomedical data. The aim is to facilitate data sharing and analysis, and to accelerate coronavirus research. The COVID-19 Data Portal will enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The COVID-19 Data Portal will be the primary entry point into the functions of a wider project, the European COVID-19 Data Platform. | COVID-19, COVID-19 data, sequence, expression, protein sequence, protein structure, proteome, translatome, analysis, EMBL-EBI | is related to: EMBL-EBI Pathogens - COVID-19 | COVID-19 | Free, Freely available | SCR_018816 | https://www.covid19dataportal.org/, https://www.ebi.ac.uk/about/news/press-releases/embl-ebi-launches-covid-19-data-portal | SCR_018337 | EMBL-EBI COVID-19 Data Portal, COVID-19 Data Portal | 2026-09-12 12:59:00 | 20 | ||||||
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Cytosplore Viewer Resource Report Resource Website 10+ mentions |
Cytosplore Viewer (RRID:SCR_018330) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web based interactive visual analysis system for exploration of single cell data published in Allen Cell Types Database and for number of single cell data resources of Brain Initiative Single Cell Network. Allows interactive exploration of hierarchies of cell types, visualization of transcriptome wide gene expression in combination with metadata of individual cells, performing differential analyses and statistics between manual selections of cells, or between pre-defined clusters throughout cellular hierarchy and more. | BICCN, visualization, transcriptomics, single cell data, gene expression, metadata, analysis, statistic, cellular hierarchy, Cytosplore |
uses: Allen Cell Types Database is used by: BICCN is used by: BRAIN Initiative Cell Atlas Network is related to: Allen Institute for Brain Science is related to: Leiden University; Leiden; Netherlands |
Free, Available for download, Freely available | SCR_018330 | 2026-09-12 12:59:00 | 19 |
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