Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Augusta University Georgia Cancer Center Flow and Mass Cytometry Core Facility Resource Report Resource Website 10+ mentions |
Augusta University Georgia Cancer Center Flow and Mass Cytometry Core Facility (RRID:SCR_025747) | access service resource, core facility, service resource | Core provides access to flow and mass cytometers, support equipment, and associated software and services. Our instrumentation affords the ability to perform almost every published flow and mass cytometry protocol. | flow cytometry, mass cytometers, |
is listed by: ABRF CoreMarketplace has parent organization: Augusta University; Georgia; USA |
ABRF_2927 | https://coremarketplace.org/?FacilityID=2927&citation=1 | SCR_025747 | Georgia Cancer Center Flow and Mass Cytometry Core | 2026-09-05 06:35:06 | 15 | ||||||||
|
University of Cincinnati Advanced Cell Analysis Service Center Core Facility Resource Report Resource Website |
University of Cincinnati Advanced Cell Analysis Service Center Core Facility (RRID:SCR_025797) | access service resource, core facility, service resource | Offers access to microscopes and flow cytometry equipment for researchers. Available services include Upright and inverted widefield microscopy, Confocal Microscopy (Zeiss LSM 710), Super-Resolution Microscopy (Nikon SIMe), Live Cell Microscopy (Incucylte), Flow Cytometry (BD LSR Fortessa), Cell Sorting (BD Aria III). | ABRF, microscopy, flow cytometry, cell sorting, |
is listed by: ABRF CoreMarketplace has parent organization: University of Cincinnati; Ohio; USA |
ABRF_2921 | https://coremarketplace.org/?FacilityID=2921&citation=1 | SCR_025797 | , University of Cincinnati Advanced Cell Analysis Service Center, Advanced Cell Analysis Service Center | 2026-09-05 06:35:07 | 0 | ||||||||
|
University Health Network Krembil Discovery Tower Flow Cytometry Core Facility Resource Report Resource Website |
University Health Network Krembil Discovery Tower Flow Cytometry Core Facility (RRID:SCR_027529) | access service resource, core facility, service resource | Core offers cell sorting and flow cytometry services. Provided instruments include BD FACS Canto II, Beckman Cytoflex LX, BD FACS ARIA III, AutoMacs Cell Separator. | ABRF, cell sorting, flow cytometry |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
Open | ABRF_5435 | https://coremarketplace.org/RRID:SCR_027529/?citation=1 | SCR_027529 | Krembil Discovery Tower (KDT) Flow Cytometry Core Facility | 2026-09-05 06:35:50 | 0 | |||||||
|
Benaroya Research Institute Cell and Tissue Analysis Group Core Facility Resource Report Resource Website 1+ mentions |
Benaroya Research Institute Cell and Tissue Analysis Group Core Facility (RRID:SCR_026327) | CATA | access service resource, core facility, service resource | Core offers flow cytometry, imaging, and histology resources.Provides expertise in the fields of imaging, histology, and flow cytometry, physical space and instruments, critical support through the whole process, from hands-on training to experiment design and data analysis. | ABRF, flow cytometry, imaging, histology resources, |
is listed by: ABRF CoreMarketplace has parent organization: Benaroya Research Institute |
Open | ABRF_3011 | https://coremarketplace.org/?FacilityID=3011&citation=1 | SCR_026327 | Benaroya Research Institute Cell and Tissue Analysis Group, , Cell and Tissue Analysis Group | 2026-09-05 06:35:19 | 4 | ||||||
|
University of Mississippi Medical Center Pharmacology Clinical Research Core Facility Resource Report Resource Website |
University of Mississippi Medical Center Pharmacology Clinical Research Core Facility (RRID:SCR_028576) | access service resource, core facility, service resource | Facility promotes and facilitates faculty and student research in biomedical bench science. Provides supports for clinical research, expertise and resources to clinical and translational scientists and trainees. Offers services of clinical research coordinators and BSL2 facilities for the processing, storage or molecular experimentation of human biological samples. In addition, equipment and technical assistance for performing ELISAs, cell proliferation assays, autoantibody assays, nitric oxide (NO) measurements, reactive oxygen species (ROS) determination, proteomics, mitochondrial function, flow cytometry, Western immunoblotting, and cell cytokine secretion profiling are available. | ABRF, clinical and translational biomedical bench services, human biological sample, ELISAs, cell proliferation assays, autoantibody assays, nitric oxide (NO) measurements, reactive oxygen species (ROS) determination, proteomics, mitochondrial function, flow cytometry, Western immunoblotting, cell cytokine secretion profiling, |
is listed by: ABRF CoreMarketplace has parent organization: University of Mississippi; Mississippi; USA |
ABRF_5997 | https://coremarketplace.org/RRID:SCR_028576/?citation=1 | SCR_028576 | , UMMC Pharmacology Clinical Research Core, Pharmacology Clinical Research Core (PCRC) | 2026-09-05 06:36:15 | 0 | ||||||||
|
University of Oklahoma Health Sciences Center Ocular Immunobiology Core Facility Resource Report Resource Website |
University of Oklahoma Health Sciences Center Ocular Immunobiology Core Facility (RRID:SCR_028864) | OIC | access service resource, core facility, service resource | Core provides instrumentation and expertise for single-cell analysis in models of ocular development, degeneration, infection, and inflammation. Instrumentation includes a Cytek Aurora full-spectrum flow cytometer, a Cytek Aurora CS cell sorter, and a Luminex 200 multiplex suspension array system, together with an Agilent wound scratch tool, an Agilent Lionheart XL plate imager, and a CellZScope for real-time barrier physiology. Services include assisted and independent instrument use, training, panel and experiment design, sample preparation, and data analysis, with particular expertise in high-autofluorescence ocular tissues. | ABRF, ocular services, flow cytometry, spectral cytometry, cell sorting, multiplex immunoassay, Luminex, Cytek Aurora, ocular immunology, |
is listed by: ABRF CoreMarketplace has parent organization: University of Oklahoma; Oklahoma; USA |
NEI P30EY021725 | https://coremarketplace.org/RRID:SCR_028864/?citation=1 | ABRF_6146 | SCR_028864 | , DMEI Ocular Immunobiology Core, OIC, OUHSC Ocular Immunobiology Core | 2026-09-05 06:36:21 | 0 | ||||||
|
flowMap Resource Report Resource Website 1+ mentions |
flowMap (RRID:SCR_002269) | software resource | Software package that quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The algorithm allows the users to specify a reference sample for comparison or to construct a reference sample from the available data. The output of the algorithm is a set of text files where the cell population labels are replaced by a metaset of population labels, generated from the matching process. | software package, mac os x, unix/linux, windows, r, flow cytometry, multiple comparison |
is listed by: OMICtools has parent organization: Bioconductor |
GNU General Public License, v2 or greater | OMICS_05600 | SCR_002269 | flowMap - A probabilistic algorithm for matching and comparing multiple flow cytometry samples | 2026-09-05 06:24:46 | 5 | ||||||||
|
flowMatch Resource Report Resource Website 1+ mentions |
flowMatch (RRID:SCR_002283) | software resource | Software for matching cell populations and building meta-clusters and templates from a collection of flow cytometry (FC) samples. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:22536861 | Free, Available for download, Freely available | OMICS_05602 | SCR_002283 | flowMatch - Matching and meta-clustering in flow cytometry | 2026-09-05 06:24:46 | 1 | |||||||
|
flowMeans Resource Report Resource Website 1+ mentions |
flowMeans (RRID:SCR_002275) | software resource | Software that identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. | software package, mac os x, unix/linux, windows, r, cell biology, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor is a plug in for: FlowJo |
PMID:21182178 | Artistic License, v2 | OMICS_05603 | SCR_002275 | flowMeans: Non-parametric Flow Cytometry Data Gating, flowMeans - Non-parametric Flow Cytometry Data Gating | 2026-09-05 06:24:46 | 7 | |||||||
|
flowMerge Resource Report Resource Website 1+ mentions |
flowMerge (RRID:SCR_002224) | software resource | Software for merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:20049161 | Free, Available for download, Freely available | OMICS_05605 | SCR_002224 | flowMerge - Cluster Merging for Flow Cytometry Data | 2026-09-05 06:24:45 | 2 | |||||||
|
flowPhyto Resource Report Resource Website |
flowPhyto (RRID:SCR_002183) | software resource | An R package that performs aggregate statistics on virtually unlimited collections of raw flow cytometry files and provides a memory efficient, parallelized solution for analyzing high-throughput flow cytometric data. | software package, mac os x, unix/linux, windows, r, classification, clustering, data import, flow cytometry, quality control, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:21208987 | Free, Available for download, Freely available | OMICS_05606 | http://www.bioconductor.org/packages/release/bioc/html/flowPhyto.html | SCR_002183 | flowPhyto - Methods for Continuous Flow Cytometry | 2026-09-05 06:24:45 | 0 | ||||||
|
flowFP Resource Report Resource Website 1+ mentions |
flowFP (RRID:SCR_001537) | software resource | A Bioconductor software package for fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, clustering, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19956416 | Free, Available for download, Freely available | OMICS_05599 | SCR_001537 | flowFP - Fingerprinting for Flow Cytometry | 2026-09-05 06:24:35 | 4 | |||||||
|
plateCore Resource Report Resource Website |
plateCore (RRID:SCR_001743) | data or information resource, database, software resource | Software that provides basic S4 data structures and routines for analyzing plate based flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19956418 | Free, Available for download, Freely available | OMICS_05641 | http://www.bioconductor.org/packages/release/bioc/html/plateCore.html | SCR_001743 | plateCore - Statistical tools and data structures for plate-based flow cytometry | 2026-09-05 06:24:38 | 0 | ||||||
|
flowClust Resource Report Resource Website 10+ mentions |
flowClust (RRID:SCR_001807) | software resource | A Bioconductor software package for automated gating of flow cytometry data that implements a robust model-based clustering approach based on multivariate t mixture models with the Box-Cox transformation. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19442304 | Artistic License, v2 | OMICS_05595 | SCR_001807 | flowClust - Clustering for Flow Cytometry | 2026-09-05 06:24:39 | 15 | |||||||
|
COMPASS Resource Report Resource Website 1+ mentions |
COMPASS (RRID:SCR_001801) | software resource | Software for combinatorial polyfunctionality analysis of single cells. It is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. It uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject's immune response to external stimuli such as infection or vaccination. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:26006008 | Free, Available for download, Freely available | OMICS_05640 | SCR_001801 | Combinatorial Polyfunctionality Analysis of Single Cells, COMPASS - Combinatorial Polyfunctionality Analysis of Single Cells, COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells | 2026-09-05 06:24:39 | 2 | |||||||
|
flowUtils Resource Report Resource Website 1+ mentions |
flowUtils (RRID:SCR_001879) | software resource | Software that provides utilities for flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, decision tree, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_05614 | SCR_001879 | flowUtils - Utilities for flow cytometry | 2026-09-05 06:24:41 | 7 | ||||||||
|
flowTrans Resource Report Resource Website 1+ mentions |
flowTrans (RRID:SCR_002093) | software resource | Software for profile maximum likelihood estimation of parameters for flow cytometry data transformations. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:21050468 | Free, Available for download, Freely available | OMICS_05612 | SCR_002093 | flowTrans - Parameter Optimization for Flow Cytometry Data Transformation | 2026-09-05 06:24:44 | 5 | |||||||
|
flowQ Resource Report Resource Website |
flowQ (RRID:SCR_000575) | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 8,2025. Software that provides quality control and quality assessment tools for flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_05805 | SCR_000575 | flowQ: Quality control for flow cytometry | 2026-09-05 06:24:23 | 0 | ||||||||
|
flowWorkspace Resource Report Resource Website 1+ mentions |
flowWorkspace (RRID:SCR_001155) | software resource | Software package that facilitates comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis. | software package, mac os x, unix/linux, windows, r, data import, data representation, flow cytometry, preprocessing |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23020243 | Free, Available for download, Freely available | OMICS_05616 | SCR_001155 | flowWorkspace - Import flowJo Workspaces into BioConductor and replicate flowJo gating with flowCore | 2026-09-05 06:24:30 | 3 | |||||||
|
DTU Multi-Assay Core Resource Report Resource Website |
DTU Multi-Assay Core (RRID:SCR_001024) | DMAC | access service resource, analysis service resource, core facility, production service resource, service resource | Facility for performing and analyzing high-throughput biological assays. The facility provides advice and research service with a range of high-throughput assays. Analysis of microarrays, sequencing, QPCR, and flow cytometry are provided. | core facility, assay, high throughput, research service, analysis service resource, microarray, qpcr, flow cytometry, sequencing |
is listed by: ScienceExchange has parent organization: Technical University of Denmark; Lyngby; Denmark |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_10437 | https://www.scienceexchange.com/labs/dtu-multi-assay-core-dmac | SCR_001024 | DTU Multi-Assay Core (DMAC), DTU Multi Assay Core | 2026-09-05 06:24:28 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
