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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Layton Center NeuroImaging Laboratory Resource Report Resource Website 1+ mentions |
Layton Center NeuroImaging Laboratory (RRID:SCR_008823) | analysis service resource, data analysis service, data or information resource, image collection, laboratory portal, organization portal, portal, production service resource, service resource | NeuroImaging laboratory focused on detecting early brain changes associated with cognitive decline and dementia that manages the neuroimaging component of all studies at the Layton Aging and Alzheimer's Center including acquisition and archival services, as well as volumetric analysis of anonymized MRI scans. Assistance with resulting data is also available, including statistical analysis, and preparation of materials for presentation and publication. The Layton Center also manages a library of thousands of digitized MRI scans, including what is believed to be the largest collection of longitudinal MRI scans of cognitively intact elderly subjects. The OADC Neuroimaging Lab conducts MRI studies on both 3 and 7T MRI systems using advanced sequences, employing a multimodal approach to brain imaging research. | normal, mri, magnetic resonance imaging assay, neuroimaging, brain, longitudinal, late adult human | has parent organization: OHSU Layton Aging and Alzheimer's Disease Center | Aging, Alzheimer's disease, Cognitive decline, Cognitively intact, Dementia | NIA | nlx_144447 | SCR_008823 | Layton Aging and Alzheimer's Center NeuroImaging Laboratory, Layton Aging & Alzheimer's Disease Center Neuro-Imaging Lab, Layton Aging Alzheimer's Disease Center Neuro-Imaging Lab, Layton Center Neuro-Imaging Lab, Layton Aging and Alzheimer's Disease Center Neuro-Imaging Lab, Layton Aging and Alzheimer's Center Neuro-Imaging Lab | 2026-09-03 04:50:00 | 1 | |||||||
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Brain Facts Resource Report Resource Website |
Brain Facts (RRID:SCR_008788) | Brain Facts | book, data or information resource, narrative resource, training material | Brain Facts is a 74-page primer on the brain and nervous system, published by SfN. Designed for a lay audience as an introduction to neuroscience, Brain Facts is also a valuable educational resource used by high school teachers and students who participate in Brain Awareness Week. The 2008 edition updates all sections and includes new information on brain development, learning and memory, language, neurological and psychiatric illnesses, potential therapies, and more. Download the full book (PDF) or download individual sections. All downloads are PDFs. Educators, request a copy of the Brain Facts book (paperback or CD) - contact [email protected]. | k-12, brain, nervous system, brain development, learning, memory, language, neurological illness, psychiatric illness, therapy, movement, sleep, stress, neuron, sensation, perception, neuroethics | has parent organization: Society for Neuroscience | Aging | nlx_144227 | SCR_008788 | Brain Facts - A Primer on the Brain and Nervous System | 2026-09-03 04:49:58 | 0 | |||||||
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OHSU Layton Aging and Alzheimer's Disease Center Resource Report Resource Website |
OHSU Layton Aging and Alzheimer's Disease Center (RRID:SCR_008821) | data or information resource, disease-related portal, portal, topical portal, training resource | An aging and Alzheimer's disease research center that conducts studies of treatments, technologies for patient support, genetics, neuroimaging, and pathology. The Center's clinical research focuses on understanding differing rates of progression and cognitive decline as compared to optimal cognitive health in the elderly and are currently studying methods of gauging the progression of Alzheimer’s disease through research in genetics, neuroimaging, and cerebrospinal fluid biomarkers. Clinical trials performed at the Center include drugs targeted to ameliorate the symptoms of memory failure and slow the progression of disease. | alzheimer's disease, late adult human, dementia, brain, oregon, training resource, aging, clinical research, clinical trial |
has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: Layton Center Clinical Data Resources is parent organization of: Layton Center NeuroImaging Laboratory is parent organization of: Layton Center Biomarkers and Genetics is parent organization of: Layton Aging and Alzheimers Disease Center Education Core is parent organization of: Layton Alzheimers Disease Center Biomarkers and Genetics Core Lab is parent organization of: Layton Alzheimers Disease Center Clinical Core |
Aging, Alzheimer's disease | NIA | Public | nlx_144445 | SCR_008821 | Layton Aging and Alzheimers Disease Center, Layton Center, OHSU Layton Center, C. Rex and Ruth H. Layton Aging and Alzheimer’s Disease Center | 2026-09-03 04:50:15 | 0 | ||||||
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University of Pennslyvania Brain Bank Resource Report Resource Website 1+ mentions |
University of Pennslyvania Brain Bank (RRID:SCR_008820) | biomaterial supply resource, brain bank, material resource, tissue bank | A brain and tissue bank that contains human brain samples from patients with Alzheimer's disease (AD), Parkinson's disease (PD) and other related neurodegenerative dementias and movement disorders. This brain bank serves as a resource for scientists and researchers, providing access to tissue samples for further research. While priority is given to University of Pennsylvania researchers, this bank will provide requests to researchers not associated with the University of Pennsylvania. This tissue bank accepts donations from those seeing a University of Pennsylvania physician or collaborator. | nervous system tissue, brain tissue, spinal cord, brain, tissue, dna, rna, slide, paraffin, alzheimer's disease, parkinson's disease, amyotrophic lateral sclerosis, frontotemporal disease, aging related neurodegenerative disorder, mild cognitive impairment, dementia, late adult human, clinical data, neurodegenerative disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Pennsylvania Center for Neurodegenerative Disease Research has parent organization: Penn Alzheimer's Disease Center |
Alzheimer's disease, Parkinson's disease, Amyotrophic Lateral Sclerosis, Frontetemporal disease, Aging related neurodegenerative disorder, Mild Cognitive Impairment, Dementia, Aging | NIH | Public, For scientists and researchers, Priority is given to researchers working on NIH-funded multi-component projects being conducted at Penn or in collaboration with researchers at Penn, Requests from outside researchers and scientists are honored | nlx_144493 | http://www.med.upenn.edu/cndr/donatingbrain.shtml | SCR_008820 | Tissue Donation and the Penn Brain Bank, University of Pennsylvania Brain Bank, Tissue Donation the Penn Brain Bank, Penn Brain Bank | 2026-09-03 04:49:54 | 1 | |||||
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McKnight Endowment Fund for Neuroscience Resource Report Resource Website 1+ mentions |
McKnight Endowment Fund for Neuroscience (RRID:SCR_008771) | McKnight Endowment Fund for Neuroscience | funding resource | An endowment that offers funding for memory research. The McKnight Endowment Fund for Neuroscience is an independent charitable organization established by The McKnight Foundation to carry out the wishes of its founder, William L. McKnight (1887-1979). Currently, the Endowment Fund for Neuroscience administers four awards which support young and established neuroscientists and encourage interdisciplinary collaboration: * Memory and Cognitive Disorders Awards * Neuroscience of Brain Disorders Awards * Scholar Awards * Technological Innovations in Neuroscience Awards Mr. McKnight, who led the 3M company for three decades, had a personal interest in memory and its diseases. He chose to set aside part of his legacy to bring hope to those suffering from brain injury or disease and cognitive impairment. | award, neuroscience, brain injury, brain, memory, cognitive impairment | has parent organization: McKnight Foundation | nlx_144129 | SCR_008771 | 2026-09-03 04:49:44 | 1 | |||||||||
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Brain's Inner Workings: Activities for Grades 9 through 12 Resource Report Resource Website 1+ mentions |
Brain's Inner Workings: Activities for Grades 9 through 12 (RRID:SCR_008842) | Brain's Inner Workings | data or information resource, narrative resource, training material, video resource | This comprehensive free collection of multimedia resources and inquiry-based activities tied to the National Science Education Standards help teachers and students learn about the structure, function and cognitive aspects of the human brain. The packet includes a teacher's manual, student manual, DVD of videos, and a CDROM of accompanying materials. | high school, brain, manual, student, teacher, brain structure, brain function, cognition, cerebral cortex, nerve cell, neurotransmitter, imaging, mri, mental disease, k-12 | has parent organization: NIMH Educational Resources | NIMH | nlx_146227 | SCR_008842 | The Brain's Inner Workings: Activities for Grades 9 through 12, Brains Inner Workings: Activities for Grades 9 through 12 | 2026-09-03 04:50:16 | 2 | |||||||
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Central Brain Tumor Registry of the United States Resource Report Resource Website 10+ mentions |
Central Brain Tumor Registry of the United States (RRID:SCR_008748) | CBTRUS | nonprofit organization | Voluntary, non-profit organization dedicated to collecting and disseminating statistical data. Resource for gathering and disseminating epidemiologic data on all primary benign and malignant brain and other CNS tumors. | human, brain, tumor, cancer, central nervous system, epidemiology, incidence, survival, diagnosis, treatment, benign, malignant, registry, epidemiological data, aggregator, clinical, statistics, population, histology, age, gender, race, hispanic, mortality | Brain tumor, Aging | American Brain Tumor Association ; National Brain Tumor Society ; Pediatric Brain Tumor Foundation ; NCI contract HHSN261201000576P |
PMID:23095881 | Application required., The community can contribute to this resource | grid.492337.8, ISNI: 0000 0004 0484 2205, nlx_143889 | https://ror.org/03849s113 | SCR_008748 | 2026-09-03 04:49:43 | 26 | |||||
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Neuroanatomy at UBC Resource Report Resource Website 1+ mentions |
Neuroanatomy at UBC (RRID:SCR_008744) | Neuroanatomy at UBC | atlas, d spatial image, data or information resource, narrative resource, training material, video resource | The WEB ATLAS contains photographs of dissected brains showing important structures. The diagrams folder contains drawings showing functionally important parts of the brain as well as drawings of dissections adapted from C.G. Smith. We are particularly pleased to make Nan Cheney''s medical illustrations of the brain and the head available. The STROKE MODEL portion of the website has syndromes associated with strokes of different vessels of the brain as well as extensive diagrams and tables about the vessels of the brain. The 3D RECONSTRUCTIONS featured on this website were made from MRI scans through the brain - where indicated the source material was from the NIH Visible Human Project. The website will also contain material important for the neuroanatomy labs for med students at UBC. Weekly quizzes will help you keep up with studying the material, the podcasts will help you review material presented in the labs, and the weekly wikis will help you share information with your peers. | mri, stroke, dissection, gross anatomy, educational materials, teaching resource, brain, neuroanatomy, coronal, coronal section, cerebral artery, behavior, cranial nerve, micrograph | has parent organization: University of British Columbia; British Columbia; Canada | NIH | nlx_143865 | SCR_008744 | UBC Neuroanatomy | 2026-09-03 04:50:13 | 2 | |||||||
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CreZoo Resource Report Resource Website 1+ mentions |
CreZoo (RRID:SCR_008919) | CreZoo | biomaterial supply resource, material resource, organism supplier | Database of helpful set of CreERT2 driver lines expressing in various regions of the developing and adult zebrafish. The lines have been generated via the insertion of a mCherry-T2A-CreERT2 in a gene trap approach or by using promoter fragments driving CreERT2. You can search the list of all transgenic lines or single entries by insertions (gene) or expression patterns (anatomy/region). In most cases the CreERT2 expression profile using in situ hybridization at 24 hpf and 48 hpf is shown, but also additional information (e.g. mCherry or CreERT2 expression at adult stages, transactivation of a Cre-dependent reporter line) is displayed. Currently, not all insertions have been mapped to a genomic location but the database will be regularly updated adding newly generated insertions and mapping information. Your help in improving and broadening the database by giving your opinion or knowledge of expression patterns is highly appreciated. | cre, transgenic line, gene, cre line, expression pattern, expression profile, blood, blood progenitor, brain, neural tube, ear, eye, fin, heart, kidney, notochord, olfactory system, regenerating fin, somite, tailbud, ubiquitous, urogenital opening, adult zebrafish, creert2 insertion, creert2, development, developing zebrafish. image |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Dresden University of Technology; Saxony; Germany |
DFG BR 1746/3-1 | nlx_151615 | SCR_008919 | zebrafish CreZoo, CreZoo Database | 2026-09-03 04:49:58 | 1 | |||||||
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Parkinsons UK Brain Bank Resource Report Resource Website 1+ mentions |
Parkinsons UK Brain Bank (RRID:SCR_007030) | UKPDSTB | biomaterial supply resource, brain bank, material resource, tissue bank | A brain bank of the United Kingdom which collects human brains for Parkinsons disease research. The collection is comprised of brain, spinal cord and a sample of cerebrospinal fluid from people with and without Parkinson's after death. Researchers can fill out a brain tissue request form to order samples from the bank. | tissue, brain, spinal cord, parkinson's disease, normal control, brain tissue, cerebral spinal fluid, snap frozen, fixed, frozen, cryopreserved, clinical data, post-mortem |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Imperial College London; London; United Kingdom has parent organization: Parkinsons UK |
Parkinson's disease, Normal control | Parkinson's Disease Society of the United Kingdom ; Imperial College London; London; United Kingdom |
Free, Available to the research community, Charged only for tissue preparation and transport | SCR_005244, nlx_144249, nlx_35543 | http://www.parkinsonstissuebank.org.uk/index.htm | SCR_007030 | Parkinson's UK Brain Bank, UK Parkinson's Disease Society Tissue Bank, UK PDS Tissue Bank, UK Parkinson's Disease Society Tissue Bank at Imperial College London | 2026-09-03 04:48:53 | 2 | ||||
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Stanford Center for Narcolepsy Resource Report Resource Website |
Stanford Center for Narcolepsy (RRID:SCR_007021) | Stanford Center for Narcolepsy | biomaterial supply resource, brain bank, material resource, tissue bank | The Stanford Center for Narcolepsy was established in the 1980s as part of the Department of Psychiatry and Behavioral Sciences. Today, it is the world leader in narcolepsy research with more than 100 articles on narcolepsy to its name. The Stanford Center for Narcolepsy was the first to report that narcolepsy-cataplexy is caused by hypocretin (orexin) abnormalities in both animal models and humans. Under the direction of Drs. Emmanuel Mignot and Seiji Nishino, the Stanford Center for Narcolepsy today treats several hundred patients with the disorder each year, many of whom participate in various research protocols. Other research protocols are conducted in animal models of narcolespy. We are always looking for volunteers in our narcolepsy research studies. We are presently recruiting narcoleptic patients for genetic studies, drug clinical trials, hypocretin measurement studies in the CSF and functional MRI studies. Monetary gifts to the Center for Narcolepsy are welcome. If you wish to make the ultimate gift, please consider participating in our Brain Donation Program. To advance our understanding of the cause, course, and treatment of narcolepsy, in 2001 Stanford University started a program to obtain human brain tissue for use in narcolepsy research. Donated brains provide an invaluable resource and we have already used previously donated brains to demonstrate that narcolepsy is caused by a lack of a very specific type of cell in the brain, the hypocretin (orexin) neuron. While the brain donations do not directly help the donor, they provide an invaluable resource and a gift to others. The real answers as to what causes or occurrs in the brain when one has narcolepsy will only be definitively understood through the study of brain tissue. Through these precious donations, narcolepsy may eventually be prevented or reversible. We currently are seeking brains from people with narcolepsy (with cataplexy and without), idiopathic hypersomnia and controls or people without a diagnosed sleep disorder of excessive sleepiness. Control brains are quite important to research, as findings must always be compared to tissue of a non-affected person. Friends and loved ones of people who suffer with narcoleps may wish to donate to our program to help fill this very important need. Refer to the Movies tab for movies of Narcolepsy / Cataplexy. | brain tissue, brain, tissue, hypocretin, orexin, narcolepsy, sleep disorder, cataplexy, idiopathic hypersomnia, normal control, kleine-levin syndrome, dog, zebrafish, research, therapy |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Stanford University School of Medicine; California; USA |
Narcolepsy, Sleep disorder, Cataplexy, Idiopathic hypersomnia, Normal control, Kleine-Levin Syndrome | Individual gifts ; NIH |
Private: not stated but looks that way | nlx_144254 | http://med.stanford.edu/school/Psychiatry/narcolepsy/ | SCR_007021 | Stanford University Center for Narcolepsy | 2026-09-03 04:49:23 | 0 | ||||
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Image Workflow Resource Report Resource Website |
Image Workflow (RRID:SCR_007017) | Image Workflow | data processing software, image analysis software, registration software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Software to support registering brain images to the stereotaxic coordinate system of a brain atlas. It was specifically designed to work with the large scale brain mosaics. When data are uploaded to the CCDB, users may launch Jibber, a custom tool for defining correspondence points between the image and an atlas overlay. Jibber automatically downsamples the data, so that users can define the warping and scaling parameters with good interactive performance on the smaller copy. Once the warping transformation is computed, the original image and the transformation matrix are sent to a cluster of computers for warping. The current version of Jetsam is running on a 30 Sun V20 nodes and the execution time is roughly about 20 minutes per GB. The warped images are then automatically registered with an image web server that supports spatial queries based on stereotaxic coordinates. These servers generate optimized downsampled images, which can be displayed by standard online clients regardless of the size of the original image. | brain, image | has parent organization: Cell Centered Database | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156721 | SCR_007017 | 2026-09-03 04:49:05 | 0 | ||||||||
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Mouse Genome Databases Resource Report Resource Website 1+ mentions |
Mouse Genome Databases (RRID:SCR_007147) | MGD | data or information resource, data set, database, organism-related portal, portal, topical portal | A mouse-related portal of genomic databases and tables of mouse brain data. Most files are intended for you to download and use on your own personal computer. Most files are available in generic text format or as FileMaker Pro databases. The server provides data extracted and compiled from: The 2000-2001 Mouse Chromosome Committee Reports, Release 15 of the MIT microsatellite map (Oct 1997), The recombinant inbred strain database of R.W. Elliott (1997) and R. W. Williams (2001), and the Map Manager and text format chromosome maps (Apr 2001). * LXS genotype (Excel file): Updated, revised positions for 330 markers genotyped using a panel of 77 LXS strain. * MIT SNP DATABASE ONLINE: Search and sort the MIT Single Nucleotide Polymorphism (SNP) database ONLINE. These data from the MIT-Whitehead SNP release of December 1999. * INTEGRATED MIT-ROCHE SNP DATABASE in EXCEL and TEXT FORMATS (1-3 MB): Original MIT SNPs merged with the new Roche SNPs. The Excel file has been formatted to illustrate SNP haplotypes and genetic contrasts. Both files are intended for statistical analyses of SNPs and can be used to test a method outlined in a paper by Andrew Grupe, Gary Peltz, and colleagues (Science 291: 1915-1918, 2001). The Excel file includes many useful equations and formatting that will help in navigating through this large database and in testing the in silico mapping method. * Use of inbred strains for the study of individual differences in pain related phenotypes in the mouse: Elissa J. Chesler''s 2002 dissertation, discussing issues relevant to the integration of genomic and phenomic data from standard inbred strains including genetic interactions with laboratory environmental conditions and the use of various in silico inbred strain haplotype based mapping algorithms for QTL analysis. * SNP QTL MAPPER in EXCEL format (572 KB, updated January 2002 by Elissa Chesler): This Excel workbook implements the Grupe et al. mapping method and outputs correlation plots. The main spreadsheet allows you to enter your own strain data and compares them to haplotypes. Be very cautious and skeptical when using this spreadsheet and the technique. Read all of the caveates. This excel version of the method was developed by Elissa Chesler. This updated version (Jan 2002) handles missing data. * MIT SNP Database (tab-delimited text format): This file is suitable for manipulation in statistics and spreadsheet programs (752 KB, Updated June 27, 2001). Data have been formatted in a way that allows rapid acquisition of the new data from the Roche Bioscience SNP database. * MIT SNP Database (FileMaker 5 Version): This is a reformatted version of the MIT Single Nucleotide Polymorphism (SNP) database in FileMaker 5 format. You will need a copy of this application to open the file (Mac and Windows; 992 KB. Updated July 13, 2001 by RW). * Gene Mapping and Map Manager Data Sets: Genetic maps of mouse chromosomes. Now includes a 10th generation advanced intercross consisting of 500 animals genetoyped at 340 markers. Lots of older files on recombinant inbred strains. * The Portable Dictionary of the Mouse Genome, 21,039 loci, 17,912,832 bytes. Includes all 1997-98 Chromosome Committee Reports and MIT Release 15. * FullDict.FMP.sit: The Portable Dictionary of the Mouse Genome. This large FileMaker Pro 3.0/4.0 database has been compressed with StuffIt. The Dictionary of the Mouse Genome contains data from the 1997-98 chromosome committee reports and MIT Whitehead SSLP databases (Release 15). The Dictionary contains information for 21,039 loci. File size = 4846 KB. Updated March 19, 1998. * MIT Microsatellite Database ONLINE: A database of MIT microsatellite loci in the mouse. Use this FileMaker Pro database with OurPrimersDB. MITDB is a subset of the Portable Dictionary of the Mouse Genome. ONLINE. Updated July 12, 2001. * MIT Microsatellite Database: A database of MIT microsatellite loci in the mouse. Use this FileMaker Pro database with OurPrimersDB. MITDB is a subset of the Portable Dictionary of the Mouse Genome. File size = 3.0 MB. Updated March 19, 1998. * OurPrimersDB: A small database of primers. Download this database if you are using numerous MIT primers to map genes in mice. This database should be used in combination with the MITDB as one part of a relational database. File size = 149 KB. Updated March 19, 1998. * Empty copy (clone) of the Portable Dictionary in FileMaker Pro 3.0 format. Download this file and import individual chromosome text files from the table into the database. File size = 231 KB. Updated March 19, 1998. * Chromosome Text Files from the Dictionary: The table lists data on gene loci for individual chromosomes. | gene, genetic, chromosome, genotype, inbred mouse strain, pain, phenotype, polygenic, recombinant, trait, genome, genomic, single nucleotide polymorphism, primer, brain, recombinant inbred mouse strain |
has parent organization: University of Tennessee Health Science Center; Tennessee; USA is organization facet of: Alliance of Genome Resources |
nif-0000-20982 | SCR_007147 | 2026-09-03 04:49:27 | 2 | |||||||||
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Cambridge Brain Activation Resource Report Resource Website 10+ mentions |
Cambridge Brain Activation (RRID:SCR_007109) | CamBA | data processing software, image analysis software, software application, software resource, software toolkit, workflow software | Suite of programs developed for fMRI analysis in a Virtual Pipeline Laboratory facilitates combining program modules from different software packages into processing pipelines to create analysis solutions which are not possible with a single software package alone. Current pipelines include fMRI analysis, statistical testing based on randomization methods and fractal spectral analysis. Pipelines are continually being added. The software is mostly written in C. This fMRI analysis package supports batch processing and comprises the following general functions at the first level of individual image analysis: movement correction (interpolation and regression), time series modeling, data resampling in the wavelet domain, hypothesis testing at voxel and cluster levels. Additionally, there is code for second level analysis - group and factorial or ANOVA mapping - after co-registration of voxel statistic maps from individual images in a standard space. The main point of difference from other fMRI analysis packages is the emphasis throughout on the use of data resampling (permutation or randomization) as a basis for inference on individual, group and factorial test statistics at voxel and cluster levels of resolution. | analysis, brain, anova, resampling, statistical, wavelet, fmri, pipeline, affine warp, algorithm or reusable library, application, c, image-to-template, java, linux, macos, magnetic resonance, nifti-1, posix/unix-like, registration, regression, spatial transformation, spectral analysis, statistical operation, temporal transformation, time domain analysis, unix shell, warping, wavelet transformation, web environment |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of Cambridge; Cambridge; United Kingdom |
GlaxoSmithKline ; Human Brain Project ; NIMH ; NIBIB |
GNU General Public License | nif-0000-00267 | http://www-bmu.psychiatry.cam.ac.uk/software/ | SCR_007109 | 2026-09-03 04:48:56 | 11 | ||||||
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fMRI Data Center Resource Report Resource Website 10+ mentions |
fMRI Data Center (RRID:SCR_007278) | fMRIDC | data or information resource, data repository, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 25, 2013 Public curated repository of peer reviewed fMRI studies and their underlying data. This Web-accessible database has data mining capabilities and the means to deliver requested data to the user (via Web, CD, or digital tape). Datasets available: 107 NOTE: The fMRIDC is down temporarily while it moves to a new home at UCLA. Check back again in late Jan 2013! The goal of the Center is to help speed the progress and the understanding of cognitive processes and the neural substrates that underlie them by: * Providing a publicly accessible repository of peer-reviewed fMRI studies. * Providing all data necessary to interpret, analyze, and replicate these fMRI studies. * Provide training for both the academic and professional communities. The Center will accept data from those researchers who are publishing fMRI imaging articles in peer-reviewed journals. The goal is to serve the entire fMRI community. | fmri, cognitive, cortex, mri, talairach, neuroimaging, cognitive neuroscience, brain, structure, function, magnetic resonance, intellect, image collection, data set |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: re3data.org has parent organization: University of California at Santa Barbara; California; USA |
NSF ; W. M. Keck Foundation ; NIMH ; Sun Microsystems Center of Excellence |
PMID:11545705 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00025 | http://www.fmridc.org/ | SCR_007278 | The fMRI Data Center | 2026-09-03 04:49:13 | 16 | ||||
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Ikaros Project Resource Report Resource Website 50+ mentions |
Ikaros Project (RRID:SCR_007391) | simulation software, software application, software resource | Ikaros is an open infrastructure for system level modeling of the brain including databases of experimental data, computational models and functional brain data. The system makes heavy use of the emerging standards for Internet based information and makes all information accessible through an open web-based interface. In addition, Ikaros can be used as a control architecture for robots which in the extension will lead to the development of a brain inspired robot architecture. The main components of the Ikaros systems are: a platform independent simulation kernel; a set of computational brain models; a set of I/O modules for interfacing with data files and peripheral such as robots or video cameras; tools for building systems of interconnected models; a plug-in architecture that allows new models to be easily added to the system; and a database with data from learning experiments that can be used for validation of the computational models. | model, computational neuroscience, brain, robot, simulation, FASEB list |
is listed by: 3DVC has parent organization: Lund University; Lund; Sweden |
nif-0000-00426 | SCR_007391 | Ikaros | 2026-09-03 04:49:11 | 89 | |||||||||
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Aged Rodent Tissue Arrays Resource Report Resource Website |
Aged Rodent Tissue Arrays (RRID:SCR_007332) | NIA Tissue Arrays, | analysis service resource, biomaterial analysis service, material analysis service, production service resource, service resource | Offer high-throughput analysis of tissue histology and protein expression for the biogerontology research community. Each array is a 4 micron section that includes tissue cores from multiple tissues at multiple ages on one slide. The arrays are made from ethanol-fixed tissue and can be used for all techniques for which conventional tissue sections can be used. Ages are chosen to span the life from young adult to very old age. (available ages: 4, 12, 18, 24 and 28 months of age) Images of H&E stained punches are available for Liver, Cardiac Muscle, and Brain. The NIA aged rodent tissue arrays were developed with assistance from the National Cancer Institute (NCI) Tissue Array Research Program (TARP), led by Dr. Stephen Hewitt, Director. NCI TARP contains more information on tissue array construction, protocols for using arrays, and references. Preparation and Product Description Tissue arrays are prepared in parallel from different sets of animals so that experiments can be conducted in duplicate, with each array using unique animals with a unique product number. The product descriptions page describes each array, including: * Strain * Gender * Ages * Tissues * Animal Identification Numbers | aged, biogerontology, caloric restricted, rodent, protein expression, tissue array, tissue core, histology, adult, old, old rodent, c57bl/6, male, female, liver, cardiac muscle, brain, tissue, kidney, skin, frontal cortex, muscle, thigh, white adipose tissue, pancreas, testes, prostate, spleen, lung, heart, dwarf, wild type, early adult, middle adult, late adult, microarray, image | Aged, Old, Control, Aging | NIA ; NCI ; NIH Blueprint for Neuroscience Research |
Public: NIA aged rodent tissue arrays are available to investigators at academic and nonprofit research institutions that are engaged in projects directly related to aging and age-related disorders. | nif-0000-00216 | http://www.nia.nih.gov/ResearchInformation/ScientificResources/AgedRodentTissueBankHandbook/TissueArrays/ | SCR_007332 | Aged Rodent Tissue Bank Handbook - Tissue Arrays, NIH Aged Rodent Tissue Bank Handbook Tissue Arrays | 2026-09-03 04:49:15 | 0 | |||||
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LONI Image and Data Archive Resource Report Resource Website 100+ mentions |
LONI Image and Data Archive (RRID:SCR_007283) | IDA, LONI IDA, | data or information resource, database, image collection | Archive used for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. IDA is utilized for dozens of neuroimaging research projects across North America and Europe and accommodates MRI, PET, MRA, DTI and other imaging modalities. | data storage, mri, pet, mra, dti, neuroimaging, image storage, histology, fmri, spect, normal, control, alzheimer's disease, mild cognitive impairment, data sharing, clinical, protection, brain, cryosection, FASEB list |
is recommended by: National Library of Medicine is listed by: NIH Data Sharing Repositories |
Control, Autism, Parkinson's disease, Alzheimer's disease, Mild Cognitive Impairment, Normal control, Aging | NIBIB | Restricted | nif-0000-00040, r3d100012840 | https://ida.loni.usc.edu/login.jsp?search=true, https://doi.org/10.17616/R39N6D | https://ida.loni.ucla.edu/login.jsp | SCR_007283 | , IDA, LONI Database, LONI, Image Data Archive | 2026-09-03 04:49:02 | 113 | |||
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NeuroLens Resource Report Resource Website 10+ mentions |
NeuroLens (RRID:SCR_007372) | NeuroLens | data processing software, data visualization software, image analysis software, image processing software, software application, software resource | An integrated environment for the analysis and visualization of functional neuroimages. It is intended to provide extremely fast and flexible image processing, via an intuitive user interface that encourages experimentation with analysis parameters and detailed inspection of both raw image data and processing results. All processing operations in NeuroLens are built around a Plugin architecture, making it easy to extend its functionality. NeuroLens runs on Apple computers based on the G4, G5, or Intel chipsets and running MacOSX 10.4 (Tiger) or later. It is available free for academic and non-profit research use. * Operating System: MacOS * Programming Language: Objective C * Supported Data Format: AFNI BRIK, ANALYZE, COR, DICOM, MGH/MGZ, MINC, Other Format | image-to-image, linear, temporal convolution - deconvolution, multivariate analysis, neuroimaging, fmri, brain structure, neural structure, brain, temporal convolution, temporal deconvolution, afni brik, analyze, cor, dicom, image display, macos, mgh/mgz, minc, magnetic resonance, objective c, registration, regression, rendering, software, spatial transformation, statistical operation, surface rendering, temporal transformation, three dimensional display, visualization |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of Montreal; Quebec; Canada |
MGH CSRL License, - free for academic and non-profit research use. | nif-0000-00333 | http://www.nitrc.org/projects/nldo | SCR_007372 | 2026-09-03 04:49:20 | 10 | |||||||
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Allen Human Brain Atlas Resource Report Resource Website 100+ mentions |
Allen Human Brain Atlas (RRID:SCR_007416) | atlas, data or information resource, data processing software, data visualization software, database, software application, software resource | Multi modal atlas of human brain that integrates anatomic and genomic information, coupled with suite of visualization and mining tools to create open public resource for brain researchers and other scientists. Data include magnetic resonance imaging (MRI), diffusion tensor imaging (DTI), histology and gene expression data derived from both microarray and in situ hybridization (ISH) approaches. Brain Explorer 2 is desktop software application for viewing human brain anatomy and gene expression data in 3D. | atlas, human, brain, anatomic, genomic, data, visualization, mining, tool, MRI, DTI, histology, gene, expression |
is related to: Speech Language Disorders Database has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Individual private donors ; U.S. Department of Health and Human Services 1C76HF15069; U.S. Department of Health and Human Services 1C76HF19619 |
PMID:23041053 | Free, Available for download, Freely available | nif-0000-00506 | http://humancortex.alleninstitute.org, http://human.brain-map.org/ | SCR_007416 | Human Cortex Study, Allen Institute for Brain Science Human Cortex Study, Allen Brain Atlas - Human Brain | 2026-09-03 04:49:35 | 135 |
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