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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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LIBRO-1: Individualized prediction and prevention of breast cancer Resource Report Resource Website 1+ mentions |
LIBRO-1: Individualized prediction and prevention of breast cancer (RRID:SCR_006036) | LIBRO-1 | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. Libro-1 is a study with the overall aim to identify prognostic factors for breast cancer. The study comprise women in the Stockholm-Gotland region that were diagnosed with breast cancer between the years 2001-2008. Register data (tumor characteristics and treatment), lifestyle factors and blood samples have been collected from the participants. | breast, cancer, tumor, treatment, woman, female, lifestyle, prognostic factor, prediction, prevention |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Breast cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151436 | SCR_006036 | KI Biobank - LIBRO-1, KI Biobank: LIBRO-1, LIBRO-1: Individualized prediction prevention of breast cancer | 2026-08-29 11:30:58 | 1 | ||||||
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Case Western Reserve Tissue Procurement and Histology Core Facility Resource Report Resource Website |
Case Western Reserve Tissue Procurement and Histology Core Facility (RRID:SCR_005344) | CWRU TPHC, TPHC | biomaterial supply resource, material resource | A combined tissue bank and core facility which provides annotated human tissue samples for research purposes. The facility also offers high quality tissue procurement, tissue microarray, histology, immunohistochemistry, photomicroscopy, and laser capture microdissection services for both human and animal tissues to biomedical investigators conducting non-clinical research studies. The TPHC offers instruction to researchers on how to incorporate human tissue into research activities and how to work within the boundaries of patient confidentiality and other regulatory issues. The purpose of the TPHC is to provide tissue collection and processing services to intramural and extramural researchers studying cancer and other diseases. Normal, diseased, benign and malignant tissues are obtained, and matched normal adjacent tissues and tissues from different organ sites from the same donor can also be provided when available. Tissue samples are prepared according to user-specified protocols and can be fresh in a medium of choice, fixed in formalin, quick frozen in the vapor phase of liquid nitrogen or snap-frozen by plunging the sample into liquid nitrogen. Frozen tissues are held in the vapor phase of the liquid nitrogen. Tissues can also be embedded, cut and mounted on slides, and stained upon request. Tissue Microarray (TMA) services are offered for the design and construction of TMAs meeting specific project needs. Basic demographic data (age, race, gender) and histopathologic data from Surgical Pathology Reports are provided by the TPHC with the tissues. | tissue, procurement, histology core facility, human, tissue, annotated |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Case Western Reserve University; Ohio; USA |
Cancer, Disease, Benign, Malignant | National Cancer Institute ; University Hospitals Center for Clinical Research and Technology ; Subcontract with an outside academic institution ; Facility user fees |
Researchers have prioritized access to tissues and services depending on institutional affiliations, Only discarded human tissues may be obtained by the TPHC for research, Tissues not utilized by internal researchers are made available to external researchers | nlx_144400 | http://www.case.edu/med/pathology/facilities/htpf.html | http://www.cwru.edu/med/pathology/facilities/tphc.html | SCR_005344 | CWRU Tissue Procurement and Histology Core Facility (TPHC), Case Western Reserve Tissue Procurement and Histology Core Facility (TPHC), CWRU Tissue Procurement Histology Core Facility (TPHC), Case Western Reserve Tissue Procurement Histology Core Facility | 2026-08-29 11:30:57 | 0 | |||
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KI Biobank - PROCAP Resource Report Resource Website 1+ mentions |
KI Biobank - PROCAP (RRID:SCR_006038) | PROCAP | biomaterial supply resource, material resource | PROCAP is a study of the importance of lifestyle and genetic factors in the progression of localized cancer of the prostate. Our study hypothesis is that the likelihood of disease recurrence of prostate cancer is modified or determined by genetic variation in the human genome and/or lifestyle factors. To be able to test our hypothesis, we are using a large, population-based cohort of men with localized prostate cancer in Sweden, recruited in 1997-2002, from which detailed clinical information and data on progression already have been collected. From this cohort, we are collecting lifestyle data and blood samples from 8,500 men. If men with progressive prostate cancer could be identified on their genetic make-up, they could be given additional therapies targeted specifically at prostate cancer progression or monitored even more frequently so that progressions could be treated even earlier. If lifestyle factors are important, these results have an impact on recommendations given to men with newly diagnosed prostate cancer. In the study, we are asking the study persons to fill in an Internet-based questionnaire focusing on diet and physical activity and we ask them to leave 2 test tubes of blood at their local urologist/health care center. The pilot study has recently been completed and evaluated and the remaining 7,500 men in the cohort will be included during 2007 and 2008. So far, we have a response rate of approximately 85% on the blood samples. The response rate for the questionnaire is approximately 80% (both in the web based and paper based versions combined). Genotyping and analysis will begin in the fall of 2008. Sample types: * EDTA whole blood * Plasma * DNA Number of sample donors: 5492 (sample collection completed) | prostate, cancer, lifestyle, gene, recurrence, male, man, questionnaire, diet, physical activity, genotype |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Prostate cancer | nlx_151437 | http://ki.se/ki/jsp/polopoly.jsp?d=29332&a=31534&l=en | SCR_006038 | 2026-08-29 11:31:01 | 1 | |||||||
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Cancer of the Prostate in Sweden (CAPS) Resource Report Resource Website 1+ mentions |
Cancer of the Prostate in Sweden (CAPS) (RRID:SCR_006033) | CAPS | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 3rd,2023. We have completed the recruitment of this population-based prostate cancer case-control study, one of the largest prostate cancer case-control study populations available so far. This study population was recruited in two phases. The inclusion and exclusion criteria were the same for the first (CAPS1) and second phase (CAPS2), except for the timeframe. In total, 3,030 cases and 1,960 controls participated in CAPS donating blood samples and answering a questionnaire during 2001-2003. In addition we have detailed clinical information on all 3,000 cases. With data generated from CAPS we have 25 published papers and 10 manuscripts since 2004. During 2006 we completed a record linkage to the Cause of Death Registry to determine the cause of death for all participants. We could conclude that 347 of the cases in CAPS had died of prostate cancer. The CAPS study has provided data to several new studies on markers on prostate cancer progression. Sample types: * EDTA whole blood * DNA Number of sample donors: 5015 (sample collection completed) | cancer, prostate, questionnaire, population, cause of death, clinical information, male, man |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Prostate cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151433 | http://ki.se/ki/jsp/polopoly.jsp?d=29332&a=23682&l=en | SCR_006033 | KI Biobank - CAPS, CAPS - Cancer of the Prostate in Sweden, Cancer of the Prostate in Sweden | 2026-08-29 11:30:58 | 5 | |||||
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National Ataxia Foundation Patient Registries Resource Report Resource Website |
National Ataxia Foundation Patient Registries (RRID:SCR_005341) | NAF Patient Registries | patient registry, people resource | A portal presenting the patient registries and databases of the National Ataxia Foundation. The registries include: Ataxia Patient Registry at CoRDS, Friedreich's Ataxia Research Alliance Patient Registry; the Fragile X Research Registry; Autosomal recessive spastic ataxia of Charlevoix-Saguenay ARSACS; and, Ataxia-Telangiectasia (A-T) Children's Project Family Data Base. | ataxia, friedreich's ataxia, fragile x syndrome, patient registry, patient database | has parent organization: National Ataxia Foundation | Ataxia, Friedreich's ataxia, Fragile X Syndrome | Public, Available to researchers | nlx_144397 | SCR_005341 | 2026-08-29 11:31:00 | 0 | |||||||
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KI Biobank - CEFALO Resource Report Resource Website 1+ mentions |
KI Biobank - CEFALO (RRID:SCR_006034) | CEFALO | biomaterial supply resource, material resource | Saliva taken from participants in a study investigating the association between environmental exposures and brain tumors in children aged 7-19 years and the interaction between these risk factors and genetic polymorphisms, which may confer susceptibility to effects of exogenous agents. Sample types: * Saliva Number of sample donors: 886 (sample collection completed) | cancer, environmental exposure, environment, brain, tumor, child, adolescent, risk factor, genetics, polymorphism, gene, exogenous agent, young human |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Brain tumor, Aging | Swedish Research Council | nlx_151434 | http://ki.se/ki/jsp/polopoly.jsp?d=29332&a=24018&l=en | SCR_006034 | 2026-08-29 11:31:01 | 1 | ||||||
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CATIE - Clinical Antipsychotic Trials in Intervention Effectiveness Resource Report Resource Website |
CATIE - Clinical Antipsychotic Trials in Intervention Effectiveness (RRID:SCR_005615) | CATIE, CATIE Schizophrenia, Clinical Antipsychotic Trials in Intervention Effectiveness | clinical trial | The NIMH-funded Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE) Study was a nationwide public health-focused clinical trial that compared the effectiveness of older (first available in the 1950s) and newer (available since the 1990s) antipsychotic medications used to treat schizophrenia. These newer medications, known as atypical antipsychotics, cost roughly 10 times as much as the older medications. CATIE is the largest, longest, and most comprehensive independent trial ever done to examine existing therapies for this disease. Schizophrenia is a brain disorder characterized by hallucinations, delusions, and disordered thinking. The course of schizophrenia is variable, but usually is recurrent and chronic, often causing severe disability. Previous studies have shown that taking antipsychotic medications consistently is far more effective than taking no medicine and that the drugs are necessary to manage the disease. The aim of the CATIE study was to determine which medications provide the best treatment for schizophrenia. Additional information may be found by following the links, http://www.nimh.nih.gov/trials/practical/catie/index.shtml, http://www.clinicaltrials.gov/ct/show/NCT00014001?order=1 | schizophrenia, clinical trial, treatment, outcome, antipsychotic |
is used by: Limited Access Datasets From NIMH Clinical Trials is listed by: ClinicalTrials.gov is related to: CATIE - Alzheimers Disease is related to: NIMH Repository and Genomics Resources has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Schizophrenia | NIMH | SCR_005512, nlx_146233, nlx_146234 | http://www.nimh.nih.gov/health/trials/practical/catie/phase1results.shtml | http://www.nimh.nih.gov/health/trials/practical/catie/index.shtml | SCR_005615 | CATIE Schizophrenia Study, Clinical Antipsychotic Trials in Intervention Effectiveness, Clinical Antipsychotic Trials in Intervention Effectiveness - Schizophrenia | 2026-08-29 11:30:57 | 0 | ||||
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Centre for Neuro Skills Resource Report Resource Website |
Centre for Neuro Skills (RRID:SCR_006106) | CNS | assessment test provider, material resource | A topical portal and providers of brain injury rehabilitation services. Resources * Pharmacology Guide * Glossary of Brain Injury Terms * Brain Injury Research Articles * Common Brain Injury Assessment Tools / Rating Scale * Certified Continuing Education Courses * Links to Resource Sites | brain, rehabilitation, therapy | Traumatic brain injury, Brain injury | nlx_151579 | SCR_006106 | CNS - Centre for Neuro Skills, Center for Neuro Skills | 2026-08-29 11:30:47 | 0 | ||||||||
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HAPLOCLUSTERS Resource Report Resource Website |
HAPLOCLUSTERS (RRID:SCR_007439) | HAPLOCLUSTERS | software application, software resource | Software program designed to detect excess haplotypes sharing in datasets consisting of case and control haplotypes. Excess haplotype sharing can be seen around disease loci in case samples since LD persists longer here than in the controls where LD is persisting only according to the relatedness of the individuals in the population, i.e. the age of the population. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
Aging | nlx_154014, biotools:haploclusters | https://bio.tools/haploclusters | SCR_007439 | 2026-08-29 11:30:49 | 0 | |||||||
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LDSUPPORT Resource Report Resource Website |
LDSUPPORT (RRID:SCR_007036) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, linux | is listed by: Genetic Analysis Software | nlx_154427 | SCR_007036 | 2026-08-29 11:30:59 | 0 | ||||||||||
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BETA Resource Report Resource Website 100+ mentions |
BETA (RRID:SCR_007556) | BETA | software application, software resource | Software application for non-parametric linkage analysis using allele sharing in sib pairs (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sun | is listed by: Genetic Analysis Software | nlx_154241 | SCR_007556 | 2026-08-29 11:30:49 | 138 | |||||||||
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LINKAGE Resource Report Resource Website |
LINKAGE (RRID:SCR_007033) | software application, software resource | Standard software package for genetic linkage called LINKAGE. Genetic linkage analysis is statistical technique used to map genes and find approximate location of disease genes. | Genetic linkage analysis, map genes, find location, disease, genes |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: FASTLINK |
nlx_154346, biotools:linkage | https://bio.tools/linkage, https://gaow.github.io/genetic-analysis-software/l/lcp/, https://gaow.github.io/genetic-analysis-software/l/linkage-general-pedigrees/ | http://www.jurgott.org/linkage/LinkagePC | SCR_007033 | , Linkage Control Program | 2026-08-29 11:31:02 | 0 | |||||||
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MAPCREATOR Resource Report Resource Website 1+ mentions |
MAPCREATOR (RRID:SCR_008001) | MAPCREATOR | software application, software resource | Software application to create gene maps using either radiation hybrid data or linkage data (entry from Genetic Analysis Software) | gene, genetic, genomic, perl | is listed by: Genetic Analysis Software | nlx_154455 | SCR_008001 | 2026-08-29 11:31:00 | 4 | |||||||||
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PhenoTips Resource Report Resource Website 10+ mentions |
PhenoTips (RRID:SCR_006340) | PhenoTips | software application, software resource | A software tool providing a Web interface and a database back-end for collecting clinical symptoms and physical findings observed in patients with genetic disorders. The main goals of this software are * To allow for collecting patient data in standard formats, enabling effortless data exchange and automated search in annotated gene and disease databases, and * To provide advanced functionalities and a friendly user interface that help reduce the clinician''''s workload, permitting seamless use of this application within the clinician''''s routine. PhenoTips uses the Human Phenotype Ontology (HPO) to express clinical phenotypes, and provides a friendly interface with error-tolerant, predictive search of phenotypic descriptions. PhenoTips closely mirrors clinician workflows: observations can be recorded directly during the patient encounter, and the interface is compatible with any device that runs a modern Web browser. The clinician can record demographic information, family history, medical history, various standard measurements, phenotypic abnormalities detected in the patient, pertinent indications that were not observed and that can be helpful for differential diagnosis, relevant images depicting manifestations of the patient''''s disorders, and additional notes for each of these categories. The software automatically plots growth curves, selects phenotypes reflecting abnormal measurements, instantly finds OMIM disorders matching the phenotypic description and suggests other symptoms to investigate in order to reach a more accurate diagnosis. | clinical symptom, physical finding, clinical, phenotype, demographic information, family history, medical history, standard measurement, indication, image, note, growth curve |
is related to: Human Phenotype Ontology is related to: OMIM has parent organization: University of Toronto; Ontario; Canada |
Genetic disorder | Free | nlx_152049 | SCR_006340 | PhenoTips: phenotyping made easy | 2026-08-29 11:30:48 | 24 | ||||||
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Graphical Overview of Linkage Disequilibrium Resource Report Resource Website 1000+ mentions |
Graphical Overview of Linkage Disequilibrium (RRID:SCR_007151) | GOLD | software application, software resource | Software package that provides a graphical summary of linkage disequilibrium in human genetic data. The graphical summary is well suited to the analysis of dense genetic maps, where contingency tables are cumbersome to interpret. An interface to the Simwalk2 application allows for the analysis of family data. | gene, genetic, genomic |
is listed by: Genetic Analysis Software has parent organization: University of Michigan; Ann Arbor; USA |
PMID:10842743 | nlx_154363 | SCR_007151 | 2026-08-29 11:30:59 | 2212 | ||||||||
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WordPress Plugin Directory Resource Report Resource Website |
WordPress Plugin Directory (RRID:SCR_006332) | software repository, software resource | Plugins can extend WordPress to do almost anything you can imagine. In the directory you can find, download, rate, and comment on all the best plugins the WordPress community has to offer. Search for res-comms for Beyond the pdf related plugins. WordPress can host your plugin and give it some exposure. You'll be able to: # Keep track of how many people have downloaded it. # Let people leave comments about your plugin. # Get your plugin rated against all the other cool WordPress plugins. # Give your plugin lots of exposure in this centralized repository. | plug in | has parent organization: WordPress | The community can contribute to this resource | nif-0000-06729 | SCR_006332 | Plugin Directory | 2026-08-29 11:31:01 | 0 | ||||||||
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PubCrawler Resource Report Resource Website 10+ mentions |
PubCrawler (RRID:SCR_008235) | service resource, software resource | PubCrawler is a free alerting service that scans daily updates to the NCBI Medline (PubMed) and GenBank databases. PubCrawler helps keeping scientists informed of the current contents of Medline and GenBank, by listing new database entries that match their research interests. The free PubCrawler web service has been operating for five years and so far has brought literature and sequence updates to over 22 000 users. It provides information on a personalized web page whenever new articles appear in PubMed or when new sequences are found in GenBank that are specific to customized queries. The server also acts as an automatic alerting system by sending out short notifications or emails with the latest updates as soon as they become available. PubCrawler searches the NCBI PubMed (Medline) and Entrez (GenBank) databases daily using search parameters (keywords, author names, etc.) specified by the user. There is no limit on the number of searches that can be carried out. Previous search hits are stored and only the newest PubMed or GenBank records are shown each day. The results are presented as an HTML Web page, similar to the results of an NCBI PubMed or Entrez query. This Web page can be located on our computer (the PubCrawler WWW-Service), on your computer (the stand-alone program), or you can receive it via e-mail (set this up using the PubCrawler WWW-Service). The Web page sorts the results into groups of PubMed/GenBank entries that are zero-days-old, 1-day-old, 2-days-old, etc., up to a user-specified age limit. Sponsors: Development of PubCrawler was supported by EMBnet | training tools, bio.tools |
is listed by: 3DVC is listed by: bio.tools is listed by: Debian |
biotools:pubcrawler, nif-0000-21345 | https://bio.tools/pubcrawler | SCR_008235 | PubCrawler | 2026-08-29 11:31:00 | 10 | ||||||||
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BMAPBUILDER Resource Report Resource Website 1+ mentions |
BMAPBUILDER (RRID:SCR_007264) | BMAPBUILDER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java, ms-windows, macos, unix, linux | is listed by: Genetic Analysis Software | nlx_154084 | SCR_007264 | 2026-08-29 11:30:49 | 1 | |||||||||
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R/STEPWISE Resource Report Resource Website 10+ mentions |
R/STEPWISE (RRID:SCR_007420) | software application, software resource | Software application that is a stepwise approach to identifying recombination breakpoints in a sequence alignment (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154601, SCR_009103, nlx_154196 | http://stat-db.stat.sfu.ca:8080/statgen/research/stepwise/ | SCR_007420 | STEPWISE | 2026-08-29 11:31:00 | 15 | ||||||||
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Xenopus Gene Collection Resource Report Resource Website 1+ mentions |
Xenopus Gene Collection (RRID:SCR_007023) | XGC | biomaterial supply resource, material resource | NIH initiative to support production of cDNA libraries, clones and 5'/3' sequences and to provide set of full-length (open reading frame) sequences and cDNA clones of expressed genes for Xenopus laevis and Xenopus tropicalis. Clones distribution is outsourced to for profit companies. Project concluded in September 2008. Resources generated by XGC are publicly accessible to biomedical research community. All sequences are deposited into GenBank.Corresponding clones are available through IMAGE clone distribution network. With conclusion of XGC project, GenBank records of XGC sequences will be frozen, without further updates. Since knowledge of what constitutes full-length coding region for some of genes and transcripts for which we have XGC clones will likely change in future, users planning to order XGC clones will need to monitor for these changes. Users can make use of genome browsers and gene-specific databases, such as UCSC Genome browser, NCBI's Map Viewer, and Entrez Gene, to view relevant regions of genome (browsers) or gene-related information (Entrez Gene). | est sequencing, expressed gene, frog, gene, adult, cdna, genomic, open reading frame, sequencing, stage, tag, xenopus laevis, xenopus tropicalis, sequence, expressed sequence tag, cdna, vector, cdna library, clone, 5'/3' sequence, frozen |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: ATCC is related to: GenBank is related to: Invitrogen Clones has parent organization: National Cancer Institute |
NIH Blueprint for Neuroscience Research ; NIH |
Free, Freely available | nif-0000-00224 | https://genecollections.nci.nih.gov/XGC/ | SCR_007023 | Xenopus Gene Collection | 2026-08-29 11:30:48 | 4 |
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