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https://portal.aodn.org.au/

Interoperable online network of marine and climate data resources.AODN Portal provides access to all available Australian marine and climate science data and provides the primary access to IMOS data.

Proper citation: Australian Ocean Data Network (RRID:SCR_023134) Copy   

•   Source: SciCrunch Registry

https://ahed.nasa.gov

Astrobiology Habitable Environments Database (AHED) is a new data system being developed as a long-term, open-access repository for astrobiology data. AHED is intended to store user-contributed results from NASA or externally-funded research in astrobiology, and to encourage sharing and synergy within the astrobiology community.

Proper citation: Astrobiology Habitable Environments Database (RRID:SCR_023133) Copy   

•   Source: SciCrunch Registry

http://researchdata.aston.ac.uk/

Aston University's repository for their research data. It is one of three services providing information about Aston University�s research. Aston Publications Explorer holds Aston's research publications and Aston Research Explorer has broader information about Aston's research work including research staff, awards and activities, projects and research groups.Metadata will be accessible to anyone free of charge. The metadata may be re-used in any medium without prior permission and re-sold commercially provided the repository is mentioned.Aston�s repository holds datasets and corresponding metadata that have been produced by Aston University staff and students. The datasets deposited in Aston Publications Explorer range from metadata records only through to full datasets. Content is the sole responsibility of the authors, and any questions over content should be directed to them.Aston Data Explorer, Aston Publications Explorer AND Aston Research Explorer allow users to re-use full-text and other full-data items under the terms of the Creative Commons Attribution Non-Commercial No Derivatives (CC BY NC ND) licence. This means that users must give appropriate credit to the authors and link to the licence. Users may not re-use the material for commercial purposes. Users cannot distribute material that has been remixed, transformed or built upon the original published output. Where a full-text or other full-data item has a licence that is more restrictive or permissive than the CC BY NC ND default licence, this licence should be adhered to.

Proper citation: Aston Data Explorer (RRID:SCR_023132) Copy   

•   Source: SciCrunch Registry

http://arch.library.northwestern.edu/

Arch is an open access repository for the research and scholarly output of Northwestern University. Log in with your NetID to deposit, describe, and organize your research for public access and long-term preservation. We'll use our expertise to help you curate, share, and preserve your work.

Proper citation: Arch (RRID:SCR_023130) Copy   

•   Source: SciCrunch Registry

http://www.cosmos-fp7.eu

A group which aims to create open standards for metabolomics data shsaring and analysis.

Proper citation: Coordination of Standards in Metabolomics (RRID:SCR_014662) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/FHHO

Ontology that facilitates representing the family health histories of persons related by biological and/or social family relationships (e.g. step, adoptive) who share genetic, behavioral, and/or environmental risk factors for disease. SWRL rules are included to compute 3 generations of biological relationships based on parentage and family history findings based on personal health findings.

Proper citation: Family Health History Ontology (RRID:SCR_010068) Copy   

•   Source: SciCrunch Registry

https://github.com/spoonsso/dannce

Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking.

Proper citation: DANNCE (RRID:SCR_023061) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/DCO

Ontology that is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).

Proper citation: Dispedia Core Ontology (RRID:SCR_010309) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SWEET

A mature foundational ontology developed at the NASA Jet Propulsion Laboratory, currently containing over 6000 concepts organized in 200 ontologies represented in OWL, whose top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). SWEET is now officially under the governance of the ESIP foundation.

Proper citation: Semantic Web for Earth and Environment Technology Ontology (RRID:SCR_010426) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CHEMBIO

Ontology for Systems Chemical Biology and Chemogenomics

Proper citation: Systems Chemical Biology and Chemogenomics Ontology (RRID:SCR_003928) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/FB-DV

A structured controlled vocabulary of the development of Drosophila melanogaster.

Proper citation: Drosophila Development Ontology (RRID:SCR_010310) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/bycom/

A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output.

Proper citation: Bycom (RRID:SCR_000659) Copy   

•   Source: SciCrunch Registry

https://stattech.ru

Web service for statistics with automated data analysis mode.

Proper citation: StatTech (RRID:SCR_023071) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/FB-BT

A structured controlled vocabulary of the anatomy of Drosophila melanogaster.

Proper citation: Drosophila Gross Anatomy Ontology (RRID:SCR_010311) Copy   

•   Source: SciCrunch Registry

https://github.com/Lcornet/GENERA

Software toolbox to infer completely reproducible comparative genomic and metabolic analyses on prokaryotes and small eukaryotes.

Proper citation: GENERA (RRID:SCR_023113) Copy   

•   Source: SciCrunch Registry

https://github.com/plaisier-lab/OncoMerge

Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile.

Proper citation: OncoMerge (RRID:SCR_023079) Copy   

•   Source: SciCrunch Registry

http://ohnlp.org/index.php/ICEPO

An ontology distributed in OWL format which contains comprehensive terms describing ion channel electrophysiology. Terms from related ontologies, such as Cell Physiology Ontology (CPO), Cardiac Electrophysiology Ontology (CEPO), and Unit Ontology, were integrated into ICEPO.

Proper citation: ICEPO (RRID:SCR_014359) Copy   

•   Source: SciCrunch Registry

https://www.distillersr.com/products/distillersr-systematic-review-software

Literature review software by DistillerSR Inc. Automates management of literature collection, screening, and assessment using AI and intelligent workflows. From systematic literature review to rapid review to living review, makes any project simpler to manage and configure to produce transparent, audit-ready, and compliant results.

Proper citation: DistillerSR (RRID:SCR_023078) Copy   

•   Source: SciCrunch Registry

http://prime.psc.riken.jp/compms/msdial/main.html

Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods.

Proper citation: MS-DIAL (RRID:SCR_023076) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/FIX

Two ontologies: methods and properties (but not objects, which are subject of the chemical ontology). The methods are applied to study the properties.

Proper citation: Physico-Chemical Methods and Properties (RRID:SCR_010407) Copy   

•   Source: SciCrunch Registry