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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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RadiAnt DICOM Viewer Resource Report Resource Website 1+ mentions |
RadiAnt DICOM Viewer (RRID:SCR_022894) | software resource | Software tool as Digital Imaging and Communications in Medicine (DICOM) viewer for medical images. | Digital Imaging and Communications in Medicine, medical images | Restricted | SCR_022894 | 2026-08-29 11:28:21 | 7 | |||||||||||
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LDSC Resource Report Resource Website 100+ mentions |
LDSC (RRID:SCR_022801) | software resource | Command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores. | estimating heritability, genetic correlation, GWAS summary statistics | Free,Available for download, Freely available | https://github.com/bulik/ldsc | SCR_022801 | 2026-08-29 11:28:21 | 467 | ||||||||||
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Fujifilm: VisualSonics Vevo 770 Imaging System Resource Report Resource Website 1+ mentions |
Fujifilm: VisualSonics Vevo 770 Imaging System (RRID:SCR_022921) | instrument resource | High resolution in vivo imaging system for small animal research. Provides visualization and measurement of anatomical and hemodynamic function in small animals down to 30 microns. | Echocardiogram, Fujifilm, vivo imaging system, small animal research, anatomical and hemodynamic function in small animals, visualization and measurement, instrument, equipment, USEDit | is listed by: USEDit | https://www.visualsonics.com/news-archives/visualsonics-introduces-next-generation-vevo-770%E2%84%A2-high-resolution-vivo-imaging-system | SCR_022921 | Vevo 770 High-Resolution In Vivo Micro-Imaging System | 2026-08-29 11:28:13 | 2 | |||||||||
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Simplicity Resource Report Resource Website 1+ mentions |
Simplicity (RRID:SCR_022809) | software resource | Software for Berthold ORION II (LB 965) microplate luminometers. | Berthold, ORION II microplate luminometers, microplate luminometers software | Free, Available for download | https://www.berthold.com/en/bioanalytic/products/microplate-readers/orion2-lb965/ | SCR_022809 | 2026-08-29 11:28:21 | 6 | ||||||||||
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MUON Resource Report Resource Website 1+ mentions |
MUON (RRID:SCR_022804) | data analysis software, data processing software, software application, software resource | Software Python framework designed to work with multimodal omics data. Aims to provide convenience and speed to its users enabling standardised analysis while staying flexible and expandable. Muon stands on shoulders of and integrates with annotated data object specification and scanpy library for single cell analysis in Python. | Multimodal omics data, standardised analysis, annotated data object specification, scanpy, single cell analysis, Python | uses: scanpy | Free, Available for download, Freely available | https://github.com/scverse/muon | SCR_022804 | multimodal omics Python framework | 2026-08-29 11:28:09 | 5 | ||||||||
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DivBrowse Resource Report Resource Website 1+ mentions |
DivBrowse (RRID:SCR_022780) | software resource, web application | Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files. | interactive visualization and analysis, diversity of genomic variants, large SNP matrices, VCF files | Free, Freely available | https://github.com/IPK-BIT/divbrowse, https://pypi.org/project/divbrowse/ | SCR_022780 | 2026-08-29 11:28:21 | 2 | ||||||||||
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Motic: MoticEasyScan Pro 6-FS Resource Report Resource Website 1+ mentions |
Motic: MoticEasyScan Pro 6-FS (RRID:SCR_022814) | instrument resource | MoticEasyScan digital slides scanner. | Instrument, equipment, USEDit, digital slides scanner, digital slides, scanner, remote pathology | is listed by: USEDit | Restricted | Model_Number_Pro_6-FS | SCR_022814 | 2026-08-29 11:28:10 | 2 | |||||||||
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Megadepth Resource Report Resource Website 1+ mentions |
Megadepth (RRID:SCR_022779) | data analysis software, data processing software, software application, software resource | Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts. | quantifying alignments, BigWig and BAM/CRAM input files, RNA-seq reads assigned to gene in BAM file quantification, | NIGMS R01GM118568; NIGMS R01GM121459; UK Medical Research Council |
PMID:33693500 | Free, Available for download, Freely available | https://bioconductor.org/packages/megadepth | SCR_022779 | 2026-08-29 11:28:09 | 2 | ||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data processing software, data visualization software, software application, software resource | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-08-29 11:28:21 | 1 | ||||||||
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University of Colorado Diabetes Research Center Resource Report Resource Website |
University of Colorado Diabetes Research Center (RRID:SCR_022897) | nonprofit organization | Center to facilitate diabetes research at University of Colorado by integrating interdisciplinary basic, translational, and clinical diabetes research base; providing infrastructure and resources that are indispensable for continued discovery and progress towards diabetes research and developing improved prediction and disease prevention;providing P&F and enrichment programs to support DRC investigators and their trainees, and recruit new and young investigators into diabetes research. | diabetes, clinical diabetes research, infrastructure and resources |
is related to: University of Colorado Denver; Colorado; USA is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Disease Modeling Core Facility is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Clinical Resource Core Facility is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Tissue Procurement and Processing Core Facility is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Cell and Tissue Analysis Core Facility has parent organization: University of Colorado; Colorado; USA |
NIDDK P30DK116073 | SCR_022897 | 2026-08-29 11:28:12 | 0 | ||||||||||
|
Compass for Simple Western Resource Report Resource Website 10+ mentions |
Compass for Simple Western (RRID:SCR_022930) | data analysis software, data processing software, software application, software resource | Simple Western instrument software to analyze assay data and processes results. | Simple Western instrument, analyze assay data, processes results | SCR_022930 | 2026-08-29 11:28:13 | 18 | ||||||||||||
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North Carolina Diabetes Research Center Resource Report Resource Website |
North Carolina Diabetes Research Center (RRID:SCR_022896) | NCDRC | nonprofit organization | Interactive regional diabetes research community across four premiere research institutions in North Carolina, who currently garner over $70 million annually for support of their diabetes research: Duke University (Duke), The University of North Carolina at Chapel Hill (UNC), Wake Forest School of Medicine (WF), and North Carolina A&T State University (NC A&T State). NCDRC supports Research Cores that represent unique strengths at each institution. | Interactive regional diabetes research community |
is parent organization of: North Carolina Diabetes Research Center Metabolomics Core Facility is parent organization of: North Carolina Diabetes Research Center Advanced Clinical Study Methods Core Facility is parent organization of: North Carolina Diabetes Research Center Genomics and Proteomics Core Facility |
NIDDK P30DK124723 | SCR_022896 | 2026-08-29 11:28:12 | 0 | |||||||||
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Bruker: 7 Tesla Bruker BioSpec 70/20 USR MRI system Resource Report Resource Website 1+ mentions |
Bruker: 7 Tesla Bruker BioSpec 70/20 USR MRI system (RRID:SCR_022895) | instrument resource | Multipurpose research system for high resolution Magnetic Resonance Spectroscopy and Imaging. System is equipped with 7 Tesla superconducting magnet designed with Ultra Shielded Refrigerated magnet technology. USR technology significantly reduces stray field to close to magnet. Used for In Vivo Magnetic Resonance Imaging. | Instrument, Equipment, USEDit, Bruker, BioSpec, Magnetic Resonance Spectroscopy and Imaging, neuroimagingmedical imaging | Restricted | Model_Number_BioSpec_70/20 | SCR_022895 | 7.0 Tesla Bruker BioSpec 70/20 USR, Bruker BioSpec 70/20 | 2026-08-29 11:27:50 | 9 | |||||||||
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QuickNII and VisuAlign Resource Report Resource Website 1+ mentions |
QuickNII and VisuAlign (RRID:SCR_022818) | software resource | EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases. | Spatially register mouse and rat serial 2D brain images, 3D reference atlases, image registration, EBRAINS |
is used by: BICCN is listed by: EBRAINS |
Free, Freely available | SCR_022818 | 2026-08-29 11:27:50 | 1 | ||||||||||
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Science Alliance Resource Report Resource Website |
Science Alliance (RRID:SCR_023040) | nonprofit organization | Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource. | Oak Ridge National Laboratory, science and engineering research programs, University of Tennessee, Tennessee Center of Excellence | https://utorii.com/research/science-alliance/ | SCR_023040 | 2026-08-29 11:28:22 | 0 | |||||||||||
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ggsignif Resource Report Resource Website 10+ mentions |
ggsignif (RRID:SCR_023047) | data analysis software, data processing software, software application, software resource | Software package to indicate if two groups are significantly different. Used to add significance brackets to ggplots. | indicate if two groups are significantly different, add significance brackets |
is used by: ggplot2 is listed by: CRAN |
Free, Available for download, Freely available | https://github.com/const-ae/ggsignif | SCR_023047 | 2026-08-29 11:28:14 | 21 | |||||||||
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3D Printed Superfusion Chamber Resource Report Resource Website |
3D Printed Superfusion Chamber (RRID:SCR_022901) | data or information resource, instrument resource, portal, project portal | Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service. | Open Behavior, electrophysiological and neuroimaging recordings, 3D-printed tools, superfusion chamber, brain presser, animal stand | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-22.2022 | https://gitlab.com/lab-equipment-assemblies1/superfusion-chamber/-/tree/master | SCR_022901 | 3D Printed Superfusion Chamber project | 2026-08-29 11:28:13 | 0 | ||||||||
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GenomonPipeline Resource Report Resource Website 10+ mentions |
GenomonPipeline (RRID:SCR_022989) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software DNA and RNA sequence analysis pipeline. | DNA sequence analysis, RNA sequence analysis | Free, Available for download, Freely available | https://github.com/Genomon-Project/GenomonPipeline | SCR_022989 | 2026-08-29 11:28:22 | 23 | ||||||||||
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DIA-NN Resource Report Resource Website 100+ mentions |
DIA-NN (RRID:SCR_022865) | 2d time-series analysis software, data analysis software, data processing software, software application, software resource, time-series analysis software | Software tool for processing of data independent acquisition proteomics experiments. Universal automated software suite for DIA proteomics data analysis. Neural networks and interference correction enable deep proteome coverage in high throughput. | Neural networks, interference correction, data independent acquisition proteomics experiments, DIA proteomics data analysis | PMID:3176806 | Free, Available for download, Freely available | SCR_022865 | 2026-08-29 11:28:11 | 345 | ||||||||||
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funannotate Resource Report Resource Website 50+ mentions |
funannotate (RRID:SCR_023039) | analysis service resource, data analysis service, data analytics software, production service resource, service resource, software application, software resource | Software package for genome annotation. Built specifically for fungi, but will also work with higher eukaryotes. Used for genome prediction, annotation, and comparison. | GeneMark, Eukaryotic Genome Annotation, genome annotation | Free, Available for download, Freely available | https://funannotate.readthedocs.io/en/latest/ | SCR_023039 | 2026-08-29 11:28:14 | 89 |
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