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https://www.radiantviewer.com/products/radiant-dicom-viewer-standard/
Software tool as Digital Imaging and Communications in Medicine (DICOM) viewer for medical images.
Proper citation: RadiAnt DICOM Viewer (RRID:SCR_022894) Copy
https://github.com/bulik/ldsc/wiki
Command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores.
Proper citation: LDSC (RRID:SCR_022801) Copy
https://www.visualsonics.com/product/imaging-systems/vevo-770
High resolution in vivo imaging system for small animal research. Provides visualization and measurement of anatomical and hemodynamic function in small animals down to 30 microns.
Proper citation: Fujifilm: VisualSonics Vevo 770 Imaging System (RRID:SCR_022921) Copy
https://www.berthold.com/en/downloads/?tx_mqsolr_mqsolr[params]=5581245f526b7d4cdf80917ea8e9068e
Software for Berthold ORION II (LB 965) microplate luminometers.
Proper citation: Simplicity (RRID:SCR_022809) Copy
Software Python framework designed to work with multimodal omics data. Aims to provide convenience and speed to its users enabling standardised analysis while staying flexible and expandable. Muon stands on shoulders of and integrates with annotated data object specification and scanpy library for single cell analysis in Python.
Proper citation: MUON (RRID:SCR_022804) Copy
https://divbrowse.ipk-gatersleben.de/
Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files.
Proper citation: DivBrowse (RRID:SCR_022780) Copy
https://moticeurope.com/en/moticeasyscan-pro-6-fs.html
MoticEasyScan digital slides scanner.
Proper citation: Motic: MoticEasyScan Pro 6-FS (RRID:SCR_022814) Copy
https://github.com/ChristopherWilks/megadepth
Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.
Proper citation: Megadepth (RRID:SCR_022779) Copy
https://github.com/Whitlock-Group/HERBS
Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space.
Proper citation: Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) Copy
https://medschool.cuanschutz.edu/diabetes-research-center
Center to facilitate diabetes research at University of Colorado by integrating interdisciplinary basic, translational, and clinical diabetes research base; providing infrastructure and resources that are indispensable for continued discovery and progress towards diabetes research and developing improved prediction and disease prevention;providing P&F and enrichment programs to support DRC investigators and their trainees, and recruit new and young investigators into diabetes research.
Proper citation: University of Colorado Diabetes Research Center (RRID:SCR_022897) Copy
Simple Western instrument software to analyze assay data and processes results.
Proper citation: Compass for Simple Western (RRID:SCR_022930) Copy
https://ncdiabetesresearch.org/
Interactive regional diabetes research community across four premiere research institutions in North Carolina, who currently garner over $70 million annually for support of their diabetes research: Duke University (Duke), The University of North Carolina at Chapel Hill (UNC), Wake Forest School of Medicine (WF), and North Carolina A&T State University (NC A&T State). NCDRC supports Research Cores that represent unique strengths at each institution.
Proper citation: North Carolina Diabetes Research Center (RRID:SCR_022896) Copy
Multipurpose research system for high resolution Magnetic Resonance Spectroscopy and Imaging. System is equipped with 7 Tesla superconducting magnet designed with Ultra Shielded Refrigerated magnet technology. USR technology significantly reduces stray field to close to magnet. Used for In Vivo Magnetic Resonance Imaging.
Proper citation: Bruker: 7 Tesla Bruker BioSpec 70/20 USR MRI system (RRID:SCR_022895) Copy
https://ebrains.eu/service/quicknii-and-visualign
EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases.
Proper citation: QuickNII and VisuAlign (RRID:SCR_022818) Copy
Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource.
Proper citation: Science Alliance (RRID:SCR_023040) Copy
https://CRAN.R-project.org/package=ggsignif
Software package to indicate if two groups are significantly different. Used to add significance brackets to ggplots.
Proper citation: ggsignif (RRID:SCR_023047) Copy
https://edspace.american.edu/openbehavior/project/3d-printed-superfusion-chamber/
Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service.
Proper citation: 3D Printed Superfusion Chamber (RRID:SCR_022901) Copy
https://github.com/Genomon-Project
Software DNA and RNA sequence analysis pipeline.
Proper citation: GenomonPipeline (RRID:SCR_022989) Copy
https://github.com/vdemichev/DiaNN
Software tool for processing of data independent acquisition proteomics experiments. Universal automated software suite for DIA proteomics data analysis. Neural networks and interference correction enable deep proteome coverage in high throughput.
Proper citation: DIA-NN (RRID:SCR_022865) Copy
https://github.com/nextgenusfs/funannotate
Software package for genome annotation. Built specifically for fungi, but will also work with higher eukaryotes. Used for genome prediction, annotation, and comparison.
Proper citation: funannotate (RRID:SCR_023039) Copy
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