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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://medschool.cuanschutz.edu/diabetes-research-center
Center to facilitate diabetes research at University of Colorado by integrating interdisciplinary basic, translational, and clinical diabetes research base; providing infrastructure and resources that are indispensable for continued discovery and progress towards diabetes research and developing improved prediction and disease prevention;providing P&F and enrichment programs to support DRC investigators and their trainees, and recruit new and young investigators into diabetes research.
Proper citation: University of Colorado Diabetes Research Center (RRID:SCR_022897) Copy
Simple Western instrument software to analyze assay data and processes results.
Proper citation: Compass for Simple Western (RRID:SCR_022930) Copy
https://ncdiabetesresearch.org/
Interactive regional diabetes research community across four premiere research institutions in North Carolina, who currently garner over $70 million annually for support of their diabetes research: Duke University (Duke), The University of North Carolina at Chapel Hill (UNC), Wake Forest School of Medicine (WF), and North Carolina A&T State University (NC A&T State). NCDRC supports Research Cores that represent unique strengths at each institution.
Proper citation: North Carolina Diabetes Research Center (RRID:SCR_022896) Copy
Multipurpose research system for high resolution Magnetic Resonance Spectroscopy and Imaging. System is equipped with 7 Tesla superconducting magnet designed with Ultra Shielded Refrigerated magnet technology. USR technology significantly reduces stray field to close to magnet. Used for In Vivo Magnetic Resonance Imaging.
Proper citation: Bruker: 7 Tesla Bruker BioSpec 70/20 USR MRI system (RRID:SCR_022895) Copy
https://ebrains.eu/service/quicknii-and-visualign
EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases.
Proper citation: QuickNII and VisuAlign (RRID:SCR_022818) Copy
Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource.
Proper citation: Science Alliance (RRID:SCR_023040) Copy
https://CRAN.R-project.org/package=ggsignif
Software package to indicate if two groups are significantly different. Used to add significance brackets to ggplots.
Proper citation: ggsignif (RRID:SCR_023047) Copy
https://edspace.american.edu/openbehavior/project/3d-printed-superfusion-chamber/
Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service.
Proper citation: 3D Printed Superfusion Chamber (RRID:SCR_022901) Copy
https://github.com/Genomon-Project
Software DNA and RNA sequence analysis pipeline.
Proper citation: GenomonPipeline (RRID:SCR_022989) Copy
https://github.com/vdemichev/DiaNN
Software tool for processing of data independent acquisition proteomics experiments. Universal automated software suite for DIA proteomics data analysis. Neural networks and interference correction enable deep proteome coverage in high throughput.
Proper citation: DIA-NN (RRID:SCR_022865) Copy
https://github.com/nextgenusfs/funannotate
Software package for genome annotation. Built specifically for fungi, but will also work with higher eukaryotes. Used for genome prediction, annotation, and comparison.
Proper citation: funannotate (RRID:SCR_023039) Copy
https://github.com/open2c/pairtools
Software command line framework to process sequencing data from Hi-C experiment. Used to process pair end sequence alignments.
Proper citation: pairtools (RRID:SCR_023038) Copy
https://github.com/hartwigmedical/hmftools/blob/master/purple/README.md
Software tool as purity ploidy estimator for whole genome sequenced data. Used for copy number calling and determination of sample purity.
Proper citation: PURPLE (RRID:SCR_022999) Copy
Software to visualize and qualitatively analyze mass spectrometry data. Used to display chromatograms and spectra, detect and integrate chromatographic peaks, search mass spectral libraries, simulate mass spectra, subtract background spectra, apply scan filters, annotate plots with text and graphics, create and save layouts, view the status of various instrument parameters during data acquisition, and create a 2D or 3D representation of an analysis displaying the acquired mass/wavelength scans. Part of liquid chromatography mass spectrometry system.
Proper citation: FreeStyle 1.8 SP1 (RRID:SCR_022877) Copy
https://github.com/walaj/svaba
Software tool for detecting structural variants in sequencing data using genome wide local assembly. Genome wide detection of structural variants and indels by local assembly. Used for detecting SVs from short read sequencing data using genome wide local assembly with low memory and computing requirements.
Proper citation: SvABA (RRID:SCR_022998) Copy
http://www.brainhealthdatabank.ca
Repository of many types and sources of data including, but not limited to, assessments, imaging, wearable, and biological samples, collected from research projects at the Centre for Addiction and Mental Health. Data that individuals choose to share to advance mental health.
Proper citation: BrainHealth Databank (RRID:SCR_022996) Copy
Organization to optimize the care of women, men, and children with lower urinary tract dysfunction and/or pelvic floor disorders through education, research and involvement in health care policy. To improve the art and science of Urology through basic and applied clinical research in urodynamics and neurourology, voiding function and dysfunction, female urology and pelvic floor dysfunction, and to disseminate and teach these concepts.
Proper citation: Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) (RRID:SCR_022874) Copy
Research and education program in Harvard Program in Therapeutic Science at Harvard Medical School to advance science and to develop technology needed to accelerate invention of new medicines and personalization of patient care. Used to study molecular causes of disease, ways drugs exert their therapeutic and adverse effects, design and interpretation of clinical trials.
Proper citation: Laboratory of Systems Pharmacology program (RRID:SCR_022873) Copy
https://www.pinnaclet.com/sleepPRO.html
Software tool to reduce scoring time and simplify data analysis. Offers automated power analysis, semi-automated scoring methods, and advanced tabular and graphical analysis for investigating sleep data sets. Custom scoring and analysis are also available. Scoring sessions between two or more users can be compared. All EEG/EMG and video data sets recorded with Pinnacle software, as well as third party EDF files, can be imported.
Proper citation: Sirenia Sleep Pro (RRID:SCR_022918) Copy
https://www.genoscope.cns.fr/brassicanapus/
Web tool as Brassica napus genome browser.
Proper citation: CNS Genoscope (RRID:SCR_023020) Copy
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