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https://www.rcon-ndt.com/products/radiography/x-ray-systems/phoenix-nanotom-s/
Nanofocus computed tomography system for applications in material science, precision injection moulding, micromechanics, electronics geology and biology. System includes nanofocus X-ray tube, precision mechanics and advanced software modules. Used for range of 3D CT applications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: GE: Phoenix Nanotom S system (RRID:SCR_022582) Copy
http://splicing.cs.washington.edu/
Web tool to predict effects of sequence variants on alternative splicing. Predicts changes in alternative 5' splice events as well as skipped exon events.
Proper citation: Hexamer Additive Linear (RRID:SCR_022581) Copy
https://web.rniapps.net/netshift/
Web tool for identification of driver nodes between case control association networks.Methodology for understanding driver microbes from healthy and disease microbiome datasets.
Proper citation: NetShift (RRID:SCR_022733) Copy
https://www.fishersci.com/shop/products/cryostar-nx50-cryostat-1/957130
Manual cryostat designed to accommodate needs of routine clinical laboratory by offering form fitting ergonomic design, with optional height adjustment, vacutome and cold D disinfection.
Proper citation: Epredia: CryoStar NX50 Cryostat (RRID:SCR_022732) Copy
Software tool to visualize set intersections in matrix layout. Interactive, web based visualization technique designed to analyze set based data. Visualizes both, set intersections and their properties, and elements in dataset. Used for quantitative analysis of data with more than three sets.
Proper citation: UpSet (RRID:SCR_022731) Copy
http://virtualplant.bio.nyu.edu/cgi-bin/vpweb/
Software platform to support systems biology research. Integrates genomic data and provides visualization and analysis tools for exploration of genomic data. Provides tools to generate biological hypotheses.
Proper citation: VirtualPlant (RRID:SCR_022576) Copy
https://www.thermofisher.com/order/catalog/product/A24811
Bentchtop Thermal Cycler for everyday PCR. Features innovative, safe heated lid and large LCD color touch screen.
Proper citation: Thermo Fisher: Applied Biosystems: SimpliAmp Thermal Cycler (RRID:SCR_023004) Copy
https://biccn.org/teams/u01-fischl
Project to develop and utilize imaging infrastructure to create human brain cell census and instantiate it in coordinate system that will enable immediate impact of all in vivo MRI studies of human brain. Consortium for creating cellular census of human cerebral cortex.
Proper citation: BICCN Imaging and analysis Techniques to Construct Cell Census Atlas of Human Brain (RRID:SCR_023000) Copy
https://www.internationalbrainlab.com/data
Data portal hosting access to behavioral data sets generated by International Brain Laboratory aiming to understand brain functions underlying decision making. Datasets are acquired in neuroscience laboratories performing experimental work. In each of these laboratories, mice are first trained in IBL decision making task following standardized training pipeline.
Proper citation: International Brain Laboratory Data (RRID:SCR_022946) Copy
https://pypi.org/search/?q=EmaCalc
Software package in Python for statistical analysis of Ecological Momentary Assessment data.
Proper citation: EmaCalc (RRID:SCR_022943) Copy
https://mriqc.readthedocs.io/en/latest/
Software tool as quality assurance workflow for Brain Imaging Data Structure compliant anatomical and functional MRI datasets. Used to extract no-reference image quality metrics from structural and functional magnetic resonance imaging data.
Proper citation: MRIQC (RRID:SCR_022942) Copy
https://cytotrace.stanford.edu/
Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data.
Proper citation: CytoTRACE (RRID:SCR_022828) Copy
http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/
Web application for predicting subcellular localization of plant proteins including those with multiple sites.Top Down Strategy to Augment Power for Predicting Plant Protein Subcellular Localization.
Proper citation: Plant mPLoc (RRID:SCR_023014) Copy
https://abi-services.informatik.uni-tuebingen.de/multiloc2/webloc.cgi
Web application for integrating phylogeny and Gene Ontology terms into subcellular protein colalization prediction.Extensive high performance subcellular protein localization prediction system.
Proper citation: Multi Loc2 (RRID:SCR_023013) Copy
https://www.vosesoftware.com/products/modelrisk/
Monte Carlo simulation software that makes quantitative risk analysis intuitive. Monte Carlo simulation Excel add-in that allows user to include uncertainty in their spreadsheet models.
Proper citation: ModelRisk (RRID:SCR_022836) Copy
https://edspace.american.edu/openbehavior/project/pi-usb-cam/
Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings.
Proper citation: Pi USB Cam project (RRID:SCR_022834) Copy
Archive for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi method research in social sciences. QDR provides data management consulting services and actively curates all data projects, maintaining value and usefulness of data over time, and ensuring their availability and findability for re-use.
Proper citation: Qualitative Data Repository (RRID:SCR_022833) Copy
https://github.com/schneebergerlab/syri
SyRI compares alignments between two chromosome level assemblies and identifies synteny and structural rearrangements.
Proper citation: SyRI (RRID:SCR_023008) Copy
https://github.com/Malindrie/scShapes
Software tool as statistical framework for identifying distribution shapes in single-cell RNA-sequencing data.
Proper citation: scShapes (RRID:SCR_022838) Copy
https://www.palisade.com/risk/
Software is add-in tool for Microsoft Excel that computes and tracks many different possible scenarios in model using Monte Carlo simulation.Helps make better decisions through risk modeling and analysis.
Proper citation: atRISK (RRID:SCR_022837) Copy
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