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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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EmaCalc Resource Report Resource Website 1+ mentions |
EmaCalc (RRID:SCR_022943) | data analysis software, data processing software, software application, software resource | Software package in Python for statistical analysis of Ecological Momentary Assessment data. | Ecological Momentary Assessment data analysis, Ecological Momentary Assessment, EMA | Free, Available for download, Freely available | SCR_022943 | 2026-08-29 11:28:13 | 1 | |||||||||||
|
MRIQC Resource Report Resource Website 10+ mentions |
MRIQC (RRID:SCR_022942) | data processing software, software application, software resource, workflow software | Software tool as quality assurance workflow for Brain Imaging Data Structure compliant anatomical and functional MRI datasets. Used to extract no-reference image quality metrics from structural and functional magnetic resonance imaging data. | Image quality metrics, brain imaging data structure, quality assurance workflow, BIDS compliant, anatomical and functional MRI datasets, MRI datasets | Laura and John Arnold Foundation ; Swiss National Science Foundation |
PMID:28945803 | Free, Available for download, Freely available | https://github.com/nipreps/mriqc | SCR_022942 | Image Quality in MRI | 2026-08-29 11:28:21 | 26 | |||||||
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CytoTRACE Resource Report Resource Website 100+ mentions |
CytoTRACE (RRID:SCR_022828) | simulation software, software application, software resource | Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data. | differentiation state of cells, single cell RNA sequencing data, predicting differentiation states, scRNA-seq data | National Science Foundation Graduate Research Fellowship ; NCI R00CA187192; NCI R01CA100225; Stanford Bio-X Bowes Graduate Student Fellowship ; Stanford Bio-X Interdisciplinary Initiatives Seed Grants Program ; Stanford Medical Science Training Program ; Stinehart Reed foundation ; U.S. Department of Defense ; Virginia and D.K. Ludwig Fund for Cancer Research |
PMID:31974247 | Free, Freely available | SCR_022828 | Cellular (Cyto) Trajectory Reconstruction Analysis using gene Counts and Expression | 2026-08-29 11:28:21 | 170 | ||||||||
|
Plant mPLoc Resource Report Resource Website 100+ mentions |
Plant mPLoc (RRID:SCR_023014) | data access protocol, software resource, web service | Web application for predicting subcellular localization of plant proteins including those with multiple sites.Top Down Strategy to Augment Power for Predicting Plant Protein Subcellular Localization. | Predicting Plant Protein Subcellular Localization, predicting subcellular localization, plant proteins, | National Natural Science Foundation of China ; Science and Technology Commission of Shanghai Municipality ; Shanghai Pujiang Program |
PMID:20596258 | Free, Freely available | SCR_023014 | Plant-mPLoc | 2026-08-29 11:28:22 | 362 | ||||||||
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Multi Loc2 Resource Report Resource Website 1+ mentions |
Multi Loc2 (RRID:SCR_023013) | data access protocol, software resource, web service | Web application for integrating phylogeny and Gene Ontology terms into subcellular protein colalization prediction.Extensive high performance subcellular protein localization prediction system. | subcellular protein localization, prediction system, integrating phylogeny and Gene Ontology terms, subcellular protein colalization prediction | PMID:19723330 | Free, Freely available | SCR_023013 | MultiLoc2 | 2026-08-29 11:28:13 | 5 | |||||||||
|
ModelRisk Resource Report Resource Website 1+ mentions |
ModelRisk (RRID:SCR_022836) | simulation software, software application, software resource | Monte Carlo simulation software that makes quantitative risk analysis intuitive. Monte Carlo simulation Excel add-in that allows user to include uncertainty in their spreadsheet models. | Monte Carlo simulation, Excel add-in, quantitative risk analysis intuitive | Restricted | SCR_022836 | 2026-08-29 11:28:21 | 2 | |||||||||||
|
Pi USB Cam project Resource Report Resource Website |
Pi USB Cam project (RRID:SCR_022834) | data or information resource, instrument resource, portal, project portal | Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. | OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals |
is listed by: OpenBehavior has parent organization: University of Illinois at Chicago; Illinois; USA |
DOI:10.1523/ENEURO.0224-22.2022 | Free, Freely available | SCR_022834 | Pi USB Cam system, Pi USB Cam | 2026-08-29 11:28:21 | 0 | ||||||||
|
Qualitative Data Repository Resource Report Resource Website 1+ mentions |
Qualitative Data Repository (RRID:SCR_022833) | QDR | data repository, service resource, storage service resource | Archive for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi method research in social sciences. QDR provides data management consulting services and actively curates all data projects, maintaining value and usefulness of data over time, and ensuring their availability and findability for re-use. | FAIR, social sciences data, storing and sharing digital data, CoreTrustSeal standards |
is used by: NIH Heal Project is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing |
Free, Freely available | DOI:10.5064, DOI:10.25504/FAIRsharing.bmz5ap, r3d100011038, DOI:10.17616/r3cs51 | https://www.re3data.org/repository/r3d100011038, https://doi.org/10.17616/r3cs51, https://doi.org/10.5064/, https://dx.doi.org/10.5064/, https://fairsharing.org/10.25504/FAIRsharing.bmz5ap, https://doi.org/10.17616/R3CS51 | SCR_022833 | Qualitative Data Repository at Syracuse University | 2026-08-29 11:28:10 | 6 | ||||||
|
SyRI Resource Report Resource Website 10+ mentions |
SyRI (RRID:SCR_023008) | SyRI | data analysis software, data processing software, software application, software resource | SyRI compares alignments between two chromosome level assemblies and identifies synteny and structural rearrangements. | Synteny identifier, rearrangement identifier, compare alignments, two chromosome level assemblies, structural rearrangements | German Federal Ministry of Education and Research | DOI:10.1186/s13059-019-1911-0 | Free, Available for download, Freely available | SCR_023008 | Synteny and Rearrangement Identifier | 2026-08-29 11:28:13 | 43 | |||||||
|
scShapes Resource Report Resource Website 1+ mentions |
scShapes (RRID:SCR_022838) | data analysis software, data processing software, software application, software resource | Software tool as statistical framework for identifying distribution shapes in single-cell RNA-sequencing data. | Differential distributions, single-cell RNA-sequencing, zero-inflation, scRNA-seq data, modeling gene expression read counts | DOI:10.1101/2022.02.13.480299 | Free, Available for download, Freely available | SCR_022838 | 2026-08-29 11:27:50 | 1 | ||||||||||
|
atRISK Resource Report Resource Website 1+ mentions |
atRISK (RRID:SCR_022837) | simulation software, software application, software resource | Software is add-in tool for Microsoft Excel that computes and tracks many different possible scenarios in model using Monte Carlo simulation.Helps make better decisions through risk modeling and analysis. | Monte Carlo simulation, risk modeling and analysis, Palisade | Restricted | SCR_022837 | @RISK, Palisade @RISK | 2026-08-29 11:28:11 | 3 | ||||||||||
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RadiAnt DICOM Viewer Resource Report Resource Website 1+ mentions |
RadiAnt DICOM Viewer (RRID:SCR_022894) | software resource | Software tool as Digital Imaging and Communications in Medicine (DICOM) viewer for medical images. | Digital Imaging and Communications in Medicine, medical images | Restricted | SCR_022894 | 2026-08-29 11:28:21 | 7 | |||||||||||
|
LDSC Resource Report Resource Website 100+ mentions |
LDSC (RRID:SCR_022801) | software resource | Command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores. | estimating heritability, genetic correlation, GWAS summary statistics | Free,Available for download, Freely available | https://github.com/bulik/ldsc | SCR_022801 | 2026-08-29 11:28:21 | 467 | ||||||||||
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Fujifilm: VisualSonics Vevo 770 Imaging System Resource Report Resource Website 1+ mentions |
Fujifilm: VisualSonics Vevo 770 Imaging System (RRID:SCR_022921) | instrument resource | High resolution in vivo imaging system for small animal research. Provides visualization and measurement of anatomical and hemodynamic function in small animals down to 30 microns. | Echocardiogram, Fujifilm, vivo imaging system, small animal research, anatomical and hemodynamic function in small animals, visualization and measurement, instrument, equipment, USEDit | is listed by: USEDit | https://www.visualsonics.com/news-archives/visualsonics-introduces-next-generation-vevo-770%E2%84%A2-high-resolution-vivo-imaging-system | SCR_022921 | Vevo 770 High-Resolution In Vivo Micro-Imaging System | 2026-08-29 11:28:13 | 2 | |||||||||
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Simplicity Resource Report Resource Website 1+ mentions |
Simplicity (RRID:SCR_022809) | software resource | Software for Berthold ORION II (LB 965) microplate luminometers. | Berthold, ORION II microplate luminometers, microplate luminometers software | Free, Available for download | https://www.berthold.com/en/bioanalytic/products/microplate-readers/orion2-lb965/ | SCR_022809 | 2026-08-29 11:28:21 | 6 | ||||||||||
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MUON Resource Report Resource Website 1+ mentions |
MUON (RRID:SCR_022804) | data analysis software, data processing software, software application, software resource | Software Python framework designed to work with multimodal omics data. Aims to provide convenience and speed to its users enabling standardised analysis while staying flexible and expandable. Muon stands on shoulders of and integrates with annotated data object specification and scanpy library for single cell analysis in Python. | Multimodal omics data, standardised analysis, annotated data object specification, scanpy, single cell analysis, Python | uses: scanpy | Free, Available for download, Freely available | https://github.com/scverse/muon | SCR_022804 | multimodal omics Python framework | 2026-08-29 11:28:09 | 5 | ||||||||
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DivBrowse Resource Report Resource Website 1+ mentions |
DivBrowse (RRID:SCR_022780) | software resource, web application | Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files. | interactive visualization and analysis, diversity of genomic variants, large SNP matrices, VCF files | Free, Freely available | https://github.com/IPK-BIT/divbrowse, https://pypi.org/project/divbrowse/ | SCR_022780 | 2026-08-29 11:28:21 | 2 | ||||||||||
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Motic: MoticEasyScan Pro 6-FS Resource Report Resource Website 1+ mentions |
Motic: MoticEasyScan Pro 6-FS (RRID:SCR_022814) | instrument resource | MoticEasyScan digital slides scanner. | Instrument, equipment, USEDit, digital slides scanner, digital slides, scanner, remote pathology | is listed by: USEDit | Restricted | Model_Number_Pro_6-FS | SCR_022814 | 2026-08-29 11:28:10 | 2 | |||||||||
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Megadepth Resource Report Resource Website 1+ mentions |
Megadepth (RRID:SCR_022779) | data analysis software, data processing software, software application, software resource | Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts. | quantifying alignments, BigWig and BAM/CRAM input files, RNA-seq reads assigned to gene in BAM file quantification, | NIGMS R01GM118568; NIGMS R01GM121459; UK Medical Research Council |
PMID:33693500 | Free, Available for download, Freely available | https://bioconductor.org/packages/megadepth | SCR_022779 | 2026-08-29 11:28:09 | 2 | ||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data processing software, data visualization software, software application, software resource | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-08-29 11:28:21 | 1 |
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