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https://pypi.org/search/?q=EmaCalc
Software package in Python for statistical analysis of Ecological Momentary Assessment data.
Proper citation: EmaCalc (RRID:SCR_022943) Copy
https://mriqc.readthedocs.io/en/latest/
Software tool as quality assurance workflow for Brain Imaging Data Structure compliant anatomical and functional MRI datasets. Used to extract no-reference image quality metrics from structural and functional magnetic resonance imaging data.
Proper citation: MRIQC (RRID:SCR_022942) Copy
https://cytotrace.stanford.edu/
Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data.
Proper citation: CytoTRACE (RRID:SCR_022828) Copy
http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/
Web application for predicting subcellular localization of plant proteins including those with multiple sites.Top Down Strategy to Augment Power for Predicting Plant Protein Subcellular Localization.
Proper citation: Plant mPLoc (RRID:SCR_023014) Copy
https://abi-services.informatik.uni-tuebingen.de/multiloc2/webloc.cgi
Web application for integrating phylogeny and Gene Ontology terms into subcellular protein colalization prediction.Extensive high performance subcellular protein localization prediction system.
Proper citation: Multi Loc2 (RRID:SCR_023013) Copy
https://www.vosesoftware.com/products/modelrisk/
Monte Carlo simulation software that makes quantitative risk analysis intuitive. Monte Carlo simulation Excel add-in that allows user to include uncertainty in their spreadsheet models.
Proper citation: ModelRisk (RRID:SCR_022836) Copy
https://edspace.american.edu/openbehavior/project/pi-usb-cam/
Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings.
Proper citation: Pi USB Cam project (RRID:SCR_022834) Copy
Archive for storing and sharing digital data (and accompanying documentation) generated or collected through qualitative and multi method research in social sciences. QDR provides data management consulting services and actively curates all data projects, maintaining value and usefulness of data over time, and ensuring their availability and findability for re-use.
Proper citation: Qualitative Data Repository (RRID:SCR_022833) Copy
https://github.com/schneebergerlab/syri
SyRI compares alignments between two chromosome level assemblies and identifies synteny and structural rearrangements.
Proper citation: SyRI (RRID:SCR_023008) Copy
https://github.com/Malindrie/scShapes
Software tool as statistical framework for identifying distribution shapes in single-cell RNA-sequencing data.
Proper citation: scShapes (RRID:SCR_022838) Copy
https://www.palisade.com/risk/
Software is add-in tool for Microsoft Excel that computes and tracks many different possible scenarios in model using Monte Carlo simulation.Helps make better decisions through risk modeling and analysis.
Proper citation: atRISK (RRID:SCR_022837) Copy
https://www.radiantviewer.com/products/radiant-dicom-viewer-standard/
Software tool as Digital Imaging and Communications in Medicine (DICOM) viewer for medical images.
Proper citation: RadiAnt DICOM Viewer (RRID:SCR_022894) Copy
https://github.com/bulik/ldsc/wiki
Command line tool for estimating heritability and genetic correlation from GWAS summary statistics. ldsc also computes LD Scores.
Proper citation: LDSC (RRID:SCR_022801) Copy
https://www.visualsonics.com/product/imaging-systems/vevo-770
High resolution in vivo imaging system for small animal research. Provides visualization and measurement of anatomical and hemodynamic function in small animals down to 30 microns.
Proper citation: Fujifilm: VisualSonics Vevo 770 Imaging System (RRID:SCR_022921) Copy
https://www.berthold.com/en/downloads/?tx_mqsolr_mqsolr[params]=5581245f526b7d4cdf80917ea8e9068e
Software for Berthold ORION II (LB 965) microplate luminometers.
Proper citation: Simplicity (RRID:SCR_022809) Copy
Software Python framework designed to work with multimodal omics data. Aims to provide convenience and speed to its users enabling standardised analysis while staying flexible and expandable. Muon stands on shoulders of and integrates with annotated data object specification and scanpy library for single cell analysis in Python.
Proper citation: MUON (RRID:SCR_022804) Copy
https://divbrowse.ipk-gatersleben.de/
Web tool for interactive visualization and analysis of diversity of genomic variants. Used for interactive exploration and analysis of very large SNP matrices based on VCF files.
Proper citation: DivBrowse (RRID:SCR_022780) Copy
https://moticeurope.com/en/moticeasyscan-pro-6-fs.html
MoticEasyScan digital slides scanner.
Proper citation: Motic: MoticEasyScan Pro 6-FS (RRID:SCR_022814) Copy
https://github.com/ChristopherWilks/megadepth
Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.
Proper citation: Megadepth (RRID:SCR_022779) Copy
https://github.com/Whitlock-Group/HERBS
Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space.
Proper citation: Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) Copy
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