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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SNPRelate Resource Report Resource Website 10+ mentions |
SNPRelate (RRID:SCR_022719) | data analysis software, data processing software, software application, software resource | Software R package as parallel computing toolset for relatedness and principal component analysis of SNP data. | parallel computing, relatedness and principal component analysis, SNP data analysis | NHGRI U01 HG 004446 | PMID:23060615 | Free, Available for download, Freely available | https://github.com/zhengxwen/SNPRelate | SCR_022719 | 2026-08-29 11:28:07 | 13 | ||||||||
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AxonDeepSeg Resource Report Resource Website 1+ mentions |
AxonDeepSeg (RRID:SCR_022531) | data processing software, image analysis software, segmentation software, software application, software resource | Open source software tool for automatic axon and myelin segmentation from microscopy data using convolutional neural networks. | automatically segmenting axons and myelin sheaths, microscopy images | Canada Foundation for Innovation ; Canada Research Chair in Quantitative Magnetic Resonance Imaging ; Canadian Institute of Health Research ; Natural Sciences and Engineering Research Council of Canada ; Quebec BioImaging Network ; TransMedTech |
PMID:29491478 | Free, Available for download, Freely available | SCR_022531 | 2026-08-29 11:28:02 | 1 | |||||||||
|
Bandage Resource Report Resource Website 10+ mentions |
Bandage (RRID:SCR_022772) | data analysis software, data processing software, software application, software resource | Software tool for visualising de novo assembly graphs. By displaying connections which are not present in contigs file, opens up new possibilities for analysing de novo assemblies. Used for interactive visualization of de novo genome assemblies. | interactive visualization, de novo genome assemblies, visualising de novo assembly graphs, analysing de novo assemblies |
is listed by: Debian is listed by: OMICtools |
PMID:26099265 | Free, Available for download, Freely available | OMICS_09013 | https://github.com/rrwick/Bandage, https://sources.debian.org/src/bandage/ | SCR_022772 | Bioinformatics Application for Navigating De novo Assembly Graphs Easily | 2026-08-29 11:28:20 | 27 | ||||||
|
hifiasm-meta Resource Report Resource Website 1+ mentions |
hifiasm-meta (RRID:SCR_022771) | data analysis software, data processing software, software application, software resource | Software tool as metagenome assembler that exploits high accuracy of recent data. De novo metagenome assembler, based on haplotype resolved de novo assembler for PacBio Hifi reads. Workflow consists of optional read selection, sequencing error correction, read overlapping, string graph construction and graph cleaning. | Error correction, read overlapping, hifiasm, haplotype resolved de novo assembler, PacBio Hifi reads | NHGRI R01HG010040; NHGRI U01HG010971 |
PMID:35534630 | Free, Available for download, Freely available | SCR_022771 | hifiasm_meta | 2026-08-29 11:28:08 | 2 | ||||||||
|
Cell Morphology Labelling Tool Resource Report Resource Website 1+ mentions |
Cell Morphology Labelling Tool (RRID:SCR_022770) | 3d spatial image, data management software, data or information resource, image, software application, software resource | Software tool for image quality. Used for labeling quality of images and labeling center point of 3D RI images. Used to mange 3D RI cell images taken from holotomography. | LabelingTool, holotomography, 3D RI cell image, image quality, mange 3D RI cell images | has parent organization: Yonsei University; Seoul; South Korea | Free, Available for download, Freely available | https://github.com/DigitalHealthcareLab/22CellMorphologyLabelingTool | https://github.com/DigitalHealthcareLab/22CellMorphologyLabelingTool | SCR_022770 | 22CellMorphologyLabelingTool | 2026-08-29 11:27:49 | 1 | |||||||
|
Heartbeat Medical Solutions GmbH Resource Report Resource Website |
Heartbeat Medical Solutions GmbH (RRID:SCR_022527) | commercial organization | Provider of measurement and analysis of Patient Reported Outcomes and their linkage to clinical data. By embedding resulting insights into individual treatments and care management, enables Value based Healthcare initiatives. Software company works from Berlin, Cologne and London on product development and supports centers, registries and research projects. Patient-Reported Outcomes are collected directly from patients in form of standardized questionnaires and provide insights into treatment effects and health related quality of life. Automatically linked with clinical observations, data based decision making basis is created for medical, therapeutic, and economic issues. | Software company, Patient Reported Outcomes provider, linkage to clinical data, clinical observations | SCR_022527 | 2026-08-29 11:28:02 | 0 | ||||||||||||
|
PICRUSt2 Resource Report Resource Website 500+ mentions |
PICRUSt2 (RRID:SCR_022647) | simulation software, software application, software resource | Software for predicting functional abundances based only on marker gene sequences.Used for prediction of metagenome functions. Contains updated and larger database of gene families and reference genomes, provides interoperability with any operational taxonomic unit (OTU)-picking or denoising algorithm, and enables phenotype predictions. Allows addition of custom reference databases. | predicting functional abundances, marker gene sequences, metagenome functions prediction | is related to: PICRUSt | GlaxoSmithKline ; NIDDK R24DK110499; NIDDK U54DK102557; NSERC ; NSF IOS CAREER 1942647 |
PMID:32483366 | Free, Available for download, Freely available | https://github.com/picrust/picrust2 | SCR_022647 | Phylogenetic Investigation of Communities by Reconstruction of Unobserved States | 2026-08-29 11:28:05 | 583 | ||||||
|
AOData Resource Report Resource Website |
AOData (RRID:SCR_022767) | data analysis software, data management software, data processing software, software application, software resource | Software tool as framework for adaptive optics data analysis. Object oriented framework for organizing data, metadata and code related to adaptive optics experiment. | data management, adaptive optics data analysis, adaptive optics experiment data | Free, Available for download, Freely available | SCR_022767 | 2026-08-29 11:28:08 | 0 | |||||||||||
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MicrobiomeDB Resource Report Resource Website 1+ mentions |
MicrobiomeDB (RRID:SCR_022766) | data or information resource | Systems biology platform for integrating, mining and analyzing microbiome experiments.Data discovery and analysis web based resource that empowers researchers to fully leverage experimental variables to interrogate microbiome datasets. Used to mine complex microbiome and metagenome studies. | Data discovery and analysis, microbiome datasets, microbiome and metagenome studies mining, integrating, mining and analyzing microbiome experiments |
is related to: Eukaryotic Pathogen Database Resources is related to: Human Microbiome Project |
DOI:10.1093/nar/gkx1027 | Free, Freely available | SCR_022766 | MicrobiomeDB.org | 2026-08-29 11:28:20 | 7 | ||||||||
|
Napari Resource Report Resource Website 10+ mentions |
Napari (RRID:SCR_022765) | data access protocol, software resource, web service | Multi dimensional image viewer for Python. Used for browsing, annotating, and analyzing large multi dimensional images. Can be coupled to machine learning and image analysis tools enabling more user friendly automated analysis. | Multi dimensional image viewer, large multi dimensional images, automated analysis | Free, Available for download, Freely available | https://github.com/napari/napari, https://zenodo.org/record/6598542#.YykVuHbMK3A | SCR_022765 | 2026-08-29 11:28:08 | 46 | ||||||||||
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Cincinnati Children's Hospital Medical Center; Cincinnati; Ohio Resource Report Resource Website |
Cincinnati Children's Hospital Medical Center; Cincinnati; Ohio (RRID:SCR_022643) | institution | Nonprofit academic medical center established in 1883. One of the oldest and most distinguished pediatric hospitals in the United States. Affiliated with the University of Cincinnati Academic Health Center. | pediatric acute care, pediatric hospital, academic medical center |
is parent organization of: Cincinnati Children's Hospital Animal Behavior Core Facility is parent organization of: Cincinnati Children's Hospital Transgenic Animal and Genome Editing Core Facility is parent organization of: Cincinnati Children's Hospital Viral Vector Core Facility is parent organization of: Cincinnati Children's Hospital Translational Trial Development and Support Laboratory Core Facility is parent organization of: Cincinnati Children's Hospital Vector Production Core Facility is parent organization of: Cincinnati Children's Hospital Mass Spectrometry Core Facility is parent organization of: Cincinnati Children's Hospital Pathology Research Core Facility is parent organization of: Cincinnati Children's Hospital NMR based Metabolomics Core Facility is parent organization of: Cincinnati Children's Hospital Research Flow Cytometry Core Facility is parent organization of: Cincinnati Children's Hospital Pluripotent Stem Cell Core Facility is parent organization of: Cincinnati Children's Hospital Office for Clinical and Translational Research Core Facility is parent organization of: Cincinnati Children's Hospital Discover Together Biobank Core Facility is parent organization of: Cincinnati Children's Hospital Imaging Research Center Core Facility is parent organization of: Cincinnati Children's Hospital DNA Sequencing and Genotyping Core Facility is parent organization of: Cincinnati Children's Hospital Critical Care Media Lab Core Facility is parent organization of: Cincinnati Children's Hospital Confocal Imaging Core Facility is parent organization of: Cincinnati Children's Hospital Cell Manipulation Laboratory Core Facility is parent organization of: Cincinnati Children's Hospital Cardiovascular Imaging Core Facility is parent organization of: Cincinnati Children's Hospital Data Management and Analysis Center Core Facility is parent organization of: Cincinnati Children's Hospital Comprehensive Mouse and Cancer Core Facility is parent organization of: Cincinnati Children's Hospital Cell Processing Core Facility is parent organization of: Cincinnati Children's Hospital Biomedical Informatics Core Facility is parent organization of: Cincinnati Children's Hospital Single Cell Genomics Core Facility is parent organization of: Cincinnati Children's Hospital Investigational Pharmacy Core Facility is parent organization of: Cincinnati Children's Hospital Microbial Metagenomics Analysis Center Microbial Genomics and Metagenomics Core Facility is parent organization of: Cincinnati Children's Hospital Magnetoencephalography Core Facility |
SCR_022643 | 2026-08-29 11:27:48 | 0 | |||||||||||
|
Hugo Data Resource Report Resource Website |
Hugo Data (RRID:SCR_022763) | data or information resource, database, patient registry, people resource | Platform for individuals who want to make their own data available for research. Used by people to join network with others who wish to contribute to vital research in partnership with and alongside leading scientists. Personal tool for saving and displaying medical information. | Hugo Health, Inc, Hugo Health Kindred, Data, Medicine, own data available for research, join network for people who wish to contribute to research | Free, Freely available | SCR_022763 | 2026-08-29 11:27:49 | 0 | |||||||||||
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National Institute for Communicable Diseases; South Africa Resource Report Resource Website 1+ mentions |
National Institute for Communicable Diseases; South Africa (RRID:SCR_022662) | NICD | institution | National public health institute for South Africa, providing disease surveillance, specialised diagnostic services, outbreak response, public health research and capacity building to support the government’s response to communicable disease threats. | disease surveillance, specialised diagnostic services, outbreak response, public health research and capacity building | SCR_022662 | South Africa, NICD The National Institute for Communicable Diseases | 2026-08-29 11:28:05 | 8 | ||||||||||
|
WPI: Constant Current Stimulus Isolator Resource Report Resource Website 1+ mentions |
WPI: Constant Current Stimulus Isolator (RRID:SCR_022660) | instrument resource | Automated bipolar pulsing for zero net charge on biological preparations. Includes Constant current, Unipolar and bipolar stimulation modes, Built-in non-compliance alarm, Optically isolated input Standard TTL triggering, DC test mode. Powered by 9 V alkaline or rechargeable batteries. | Isolator, stimulus isolator, constant current isolator, constant current, World Precision Instruments, USEDit, instrument, equipment | is listed by: USEDit | Restricted | Model_Number_A365 | SCR_022660 | Stimulus Isolator, WPI Constant Current Stimulus Isolator, Constant Current Stimulus Isolator | 2026-08-29 11:28:20 | 1 | ||||||||
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Standard BioTools: Biomark HD system Resource Report Resource Website 10+ mentions |
Standard BioTools: Biomark HD system (RRID:SCR_022658) | instrument resource | Automated, high performance PCR/qPCR system that uses microfluidics technology to process samples at nanoliter scale volumes for gene expression, genotyping, sample identification, copy number variation analysis and digital PCR. With wide range of integrated fluidic circuit (IFC) formats available, scaling from mid to high throughput on single system. | PCR, qPCR, microfluidics technology, nanoliter scale volumes, integrated fluidic circuit formats, USEDit, instrument, equipment | is listed by: USEDit | Restricted | SCR_022658 | Biomark™ HD system, BioMark HD, Fluidigm Biomark HD system, Biomark HD system (Fluidigm) | 2026-08-29 11:28:05 | 18 | |||||||||
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OHAUS: CS200P Portable Balance Resource Report Resource Website |
OHAUS: CS200P Portable Balance (RRID:SCR_022536) | instrument resource | OHAUS CS lightweight, portable, compact balance for use in laboratory, industrial, education and home use applications. CS offers great value without sacrificing accuracy for weighing jobs of 200g to 5000g. | USEDit, instrument, equipment, portable balance, compact balance, | is listed by: USEDit | Restricted | SCR_022536 | 2026-08-29 11:28:19 | 0 | ||||||||||
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NPI: Pressure Application Module Resource Report Resource Website 1+ mentions |
NPI: Pressure Application Module (RRID:SCR_022657) | PDES | instrument resource | Pneumatic drug ejection. Used to apply ionic and non-ionic substances in small amounts. Locally precise application with microJECT pipette holder with built-in valve. Also available as 19″ stand alone device. | Pneumatic drug ejection, USEDit, instrument, equipment | is listed by: USEDit | SCR_022657 | Pressure Application Module (NPI Electronic), PDES Pressure Application Module, PDES, NPI Electronics PDES | 2026-08-29 11:28:05 | 1 | |||||||||
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AIRR Data Commons Resource Report Resource Website |
AIRR Data Commons (RRID:SCR_022597) | data or information resource, narrative resource, portal, standard specification, topical portal | Network of distributed repositories that adhere to standards set out by AIRR Community. This collection contains standards and repositories either created by the AIRR community or approved for use within AIRR community. | Network of distributed repositories, repositories that adhere to standards, standards set out by AIRR Community, |
uses: ImmuneDB is related to: AIRR Community is related to: Adaptive Immune Receptor Repertoire Software Guidelines is related to: Adaptive Immune Receptor Repertoire: Repertoire Schema is related to: Adaptive Immune Receptor Repertoire Data Commons API Specification is related to: Minimal information about Adaptive Immune Receptor Repertoires is related to: Adaptive Immune Receptor Repertoire Data Model is related to: Adaptive Immune Receptor Repertoire Rearrangement Schema is related to: iReceptor |
Free, Freely available | https://fairsharing.org/3526 | SCR_022597 | 2026-08-29 11:27:48 | 0 | |||||||||
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University of Toyama; Toyama; Japan Resource Report Resource Website |
University of Toyama; Toyama; Japan (RRID:SCR_022751) | university | Japanese national university in Toyama Prefecture established in 1949. University of Toyama has three campuses, namely Gofuku, Sugitani, and Takaoka campuses. | is parent organization of: USVCAM | SCR_022751 | 2026-08-29 11:28:08 | 0 | ||||||||||||
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Minimal information about Adaptive Immune Receptor Repertoires Resource Report Resource Website |
Minimal information about Adaptive Immune Receptor Repertoires (RRID:SCR_022596) | MiAIRR | data or information resource, narrative resource, portal, standard specification, topical portal | Checklist of minimally required information that we recommend journals adopt, and that could form requirements for submission to public data repository. AIRR sequencing studies apply high throughput sequencing technologies to profile B cell receptors (BCRs) and T cell receptors (TCRs). Standards were developed by AIRR Community Minimal Standards Working Group. | Checklist of minimally required information journals adopt, public data repository requirements, AIRR Community Minimal Standards Working Group standards | is related to: AIRR Data Commons | Free, Freely available | https://fairsharing.org/FAIRsharing.31hec1 | SCR_022596 | 2026-08-29 11:28:04 | 0 |
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