Tools   Select Another Resource Report Type

https://edspace.american.edu/openbehavior/project/piratemc/

Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub.

Proper citation: Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/raspi-aud-generator/

Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli.

Proper citation: Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) Copy   

•   Source: SciCrunch Registry

https://www.erim.eur.nl/research-support/meta-essentials/

Software tool for meta analysis. Facilitates integration and synthesis of effect sizes from different studies. Consists of set of workbooks designed for Microsoft Excel that automatically produces all required statistics, tables, figures, and more.

Proper citation: Meta Essentials (RRID:SCR_022464) Copy   

•   Source: SciCrunch Registry

https://github.com/earnestt1234/SipperViz

Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data.

Proper citation: SipperViz (RRID:SCR_022463) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/aba/

Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously.

Proper citation: Atlas Based Analysis (RRID:SCR_022339) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/flybrainlab/

Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data.

Proper citation: FlyBrainLab (RRID:SCR_022337) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/dbscorer/

Open source, MATLAB based software for forced swim test and tail suspension test video analysis.

Proper citation: DBscorer (RRID:SCR_022334) Copy   

•   Source: SciCrunch Registry

https://www.bdbiosciences.com/en-us/products/instruments/flow-cytometers/research-cell-analyzers/bd-facsymphony-a5-se

Flow cytometer gains full visible spectrum coverage to collect all light emitted without need for filter changes, increasing dye flexibility and number of simultaneous colors. Uses unmix spectral data live in BD FACSDiva Software while retaining familiar compensation workflow. May improve resolution of difficult cells and populations using autofluorescence unmixing.

Proper citation: BD Biosciences: FACSymphony A5 SE Cell Analyzer (RRID:SCR_022674) Copy   

•   Source: SciCrunch Registry

https://www.scireq.com/flexivent/

System for small animal pulmonary function. Used for in vivo respiratory mechanics measurements. Goes beyond traditional resistance and compliance mechanics of pulmonary ventilation, and captures details about mechanical properties of conducting airways, terminal airways and parenchyma. Achieves sensitivity and reproducibility by precisely controlling experimental conditions.

Proper citation: SciReq: flexiVent system (RRID:SCR_022673) Copy   

•   Source: SciCrunch Registry

https://smog-server.org/smog2/OpenSMOG/

Software library that enables use of structure based SMOG models of biopolymers with OpenMM.

Proper citation: OpenSMOG (RRID:SCR_022551) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/modular-led-displays/

Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability.

Proper citation: Modular LED Displays project (RRID:SCR_022704) Copy   

•   Source: SciCrunch Registry

https://datasus.saude.gov.br/informacoes-de-saude-tabnet/

Portal to find all informations about epidemiology regarding public and suplementary health in Brazil.

Proper citation: TABNET (RRID:SCR_022668) Copy   

•   Source: SciCrunch Registry

https://www.biomerieux-usa.com/clinical/nuclisens-easymag

System for total nucleic acid extraction from variety of sample types and volumes. System automates enhanced magnetic silica version of bioMérieux’s proprietary BOOM technology gold standard for universal extraction of RNA and DNA.Clinical use includes nucleic acid extraction in front of molecular infectious disease assays, molecular oncology assays, molecular genetics assays.

Proper citation: BioMerieux: NucliSens easyMAG system (RRID:SCR_022666) Copy   

•   Source: SciCrunch Registry

https://github.com/mueller-lab/PyFRAP

Software Python package for FRAP analysis. Simulation based analysis software that makes use of PDE simulations to analyze FRAP experiments in 3D geometries. Used to assess molecular diffusion.

Proper citation: PyFRAP (RRID:SCR_022665) Copy   

•   Source: SciCrunch Registry

https://github.com/holmescao/ANTS_marking_and_analysis_tools

Software tool for marking ant motion trajectories dataset from video. Provided marking software, three data quality analysis scripts, and tracking performance evaluation tool.

Proper citation: ANTS marking and analysis tools (RRID:SCR_022543) Copy   

•   Source: SciCrunch Registry

https://github.com/mueller-lab/PyFDAP

Software tool as automated analysis of fluorescence decay after photoconversion (FDAP) experiments.

Proper citation: PyFDAP (RRID:SCR_022664) Copy   

•   Source: SciCrunch Registry

https://ibidi.com/chemotaxis-analysis/171-chemotaxis-and-migration-tool.html?gclid=CjwKCAjwu5yYBhAjEiwAKXk_eOEiTG2oTzme7pgYbZus8ZBKhu4S8YCWwlbQdQLdcOTWx4xTJ83T4xoCcVYQAvD_BwE

Software tool for data analysis from time stack chemotaxis experiments. Based on NIH ImageJ image processing system.

Proper citation: Chemotaxis and Migration Tool (RRID:SCR_022708) Copy   

•   Source: SciCrunch Registry

http://www.swissdock.ch/

Web service to predict molecular interactions that may occur between target protein and small molecule. Protein small molecule docking web service based on EADock DSS.

Proper citation: SwissDock (RRID:SCR_022564) Copy   

•   Source: SciCrunch Registry

https://github.com/zdk123/SpiecEasi

Software R package for microbiome network analysis. Used for inference of microbial ecological networks from amplicon sequencing datasets. Combines data transformations developed for compositional data analysis with graphical model inference framework that assumes underlying ecological association network is sparse.

Proper citation: SpiecEasi (RRID:SCR_022712) Copy   

•   Source: SciCrunch Registry

https://github.com/jmchandonia/CORAL

Software tool as framework for rigorous self validated data modeling and integrative, reproducible data analysis.

Proper citation: CORAL (RRID:SCR_022711) Copy   

•   Source: SciCrunch Registry