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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SIPEC Resource Report Resource Website |
SIPEC (RRID:SCR_022364) | SIPEC | data analysis software, data processing software, software application, software resource | Software pipeline for video analysis. Deep learning Swiss knife for behavioral data analysis.Performs segmentation, identification, pose-estimation and classification of complex behaviour. Used for analysis of behavior of multiple animals in complex environments. | OpenBehavior, video analysis, behavioral data analysis |
is listed by: OpenBehavior has parent organization: ETH Zurich; Zurich; Switzerland |
DOI:10.1038/s42256-022-00477-5 | Free, Available for download, Freely available | https://github.com/SIPEC-Animal-Data-Analysis/SIPEC | SCR_022364 | SIPEC project | 2026-08-29 11:28:19 | 0 | ||||||
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Timed pressure control hardware and software for delivery of air mediated distensions in animal models Resource Report Resource Website 1+ mentions |
Timed pressure control hardware and software for delivery of air mediated distensions in animal models (RRID:SCR_022363) | data or information resource, instrument resource, portal, project portal | System uses Arduino microcontroller to control relay module that operates solenoid valve which all sit in 3D printed housing. Solenoid works in conjunction with flowmeter regulator to allow for controlled flow of pressurized air into target. Timing of distensions is controlled via either custom Python based UI, or by triggered TTL pulse.Timed pressure control hardware and software used for delivery of air mediated distensions in animal models. | OpenBehavior, Instrument, behavior apparatus, delivery of air mediated distensions, animal models | is listed by: OpenBehavior | DOI:10.1016/J.OHX.2022.E00271 | Free, Freely available | https://osf.io/rs5p4 | SCR_022363 | Timed pressure control hardware and software for delivery of air mediated distensions in animal models project | 2026-08-29 11:27:59 | 1 | |||||||
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OpenPose Resource Report Resource Website 10+ mentions |
OpenPose (RRID:SCR_022362) | data analysis software, data processing software, software application, software resource | Software tool as multi subject keypoint detection library for real time pose estimation.Used to track behavior of monkeys in natural environments, without disrupting their typical pattern of behavior. Deep learning software system for body, face, hands, and foot estimation in monkeys. | OpenBehavior, tracking limb orientation, behavior measurement, freely moving, realtime recording and analysis, video analysis | is listed by: OpenBehavior | DOI:10.1101/2021.01.28.428726 | Free, Available for download, Freely available | https://github.com/CMU-Perceptual-Computing-Lab/openpose | SCR_022362 | 2026-08-29 11:28:19 | 13 | ||||||||
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TRex Resource Report Resource Website 1+ mentions |
TRex (RRID:SCR_022361) | data analysis software, data processing software, software application, software resource | Open source animal tracking software tool. Used to visually track movement of multiple animals at once. | OpenBehavior, animal tracking, visually track movement | is listed by: OpenBehavior | DOI:10.7554/eLife.64000 | https://github.com/mooch443/trex | SCR_022361 | 2026-08-29 11:27:46 | 2 | |||||||||
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DLStream Resource Report Resource Website 1+ mentions |
DLStream (RRID:SCR_022359) | data analysis software, data processing software, software application, software resource | Software tool enables closed loop behavioral experiments using deep learning based markerless, real time posture detection.Closed loop behavioral experiment toolkit using pose estimation of body parts. | OpenBehavior, video analysis, behavioral experiment, pose estimation, body parts | is listed by: OpenBehavior | Projekt DEAL | DOI:10.1038/s42003-021-01654-9 | Free, Available for download, Freely available | https://github.com/SchwarzNeuroconLab/DeepLabStream | SCR_022359 | DeepLabStream | 2026-08-29 11:28:19 | 1 | ||||||
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Variational Embedding of Animal Motion Resource Report Resource Website 1+ mentions |
Variational Embedding of Animal Motion (RRID:SCR_022477) | VAME | data processing software, data visualization software, software application, software resource | Software Python tool to cluster behavioral signals obtained from pose estimation tools. Unsupervised probabilistic deep learning framework capable of finding behavioral motifs in pose estimation data. Capable of augmenting quantitative behavioral analyses of data derived from standard pose-estimation software packages. Written based on core functions from DeepLabCut, and readily works with pose data from that package. Can also work with data from other pose estimation packages such as SLEAP. | OpenBehavior, vame, variational embedding of animal motion, pytorch, pose estimation |
is listed by: OpenBehavior is related to: DeepLabCut is related to: SLEAP, LEAP and MotionMapper project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/vame/ | SCR_022477 | Variational Animal Motion Embedding, VAME: Variational Embedding of Animal Motion | 2026-08-29 11:28:01 | 3 | |||||||
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Pyneal Resource Report Resource Website |
Pyneal (RRID:SCR_022333) | data analysis software, data processing software, software application, software resource | Open source software package to support rt-fMRI via data in formats generated by Siemens, Philips, and GE. Used to support real time functional magnetic resonance imaging. | OpenBehavior, real time functional magnetic resonance imaging | is listed by: OpenBehavior | DOI:10.3389/fnins.2020.00900 | Free, Available for download, Freely available | https://github.com/jeffmacinnes/pyneal | SCR_022333 | 2026-08-29 11:28:18 | 0 | ||||||||
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OORTT Resource Report Resource Website |
OORTT (RRID:SCR_022331) | software resource | Software Pyton scripts to run computerised task of Reaction Time. Scripts, together with their instructions and scoresheets.Used for assessment of RTs that is freely available, compatible with all operating systems, without license and activation costs, and based on open source software platform. | OpenBehavior, behavioral measurment, reaction time, assessment of reaction times, OpenSesame 3.1.9 | is listed by: OpenBehavior | DOI:10.1007/s10072-020-04839-y | Free, Available for download, Freely available | https://osf.io/xvcg6/ | SCR_022331 | Open source Open access Reaction Time Test | 2026-08-29 11:27:57 | 0 | |||||||
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AutoStereota Resource Report Resource Website 1+ mentions |
AutoStereota (RRID:SCR_022330) | data or information resource, instrument resource, portal, project portal | Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. | OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2018.10.013 | Free, Freely available | https://github.com/liang-bo/AutoStereota | SCR_022330 | 2026-08-29 11:28:18 | 3 | ||||||||
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iReceptor Resource Report Resource Website 1+ mentions |
iReceptor (RRID:SCR_022294) | data or information resource, portal, topical portal | Data discovery platform that facilitates curation, analysis and sharing of antibody/B-cell and T-cell receptor repertoires from multiple labs and institutions. Used to increase value of data through sharing with community. Platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories. | Adaptive Immune Receptor Repertoire, AIRR-seq data, querying and analyzing, antibody, B-cell, T-cell, receptor, federated repositories, data discovery | is related to: AIRR Data Commons | PMID:29944754 | Free, Freely available | SCR_022294 | 2026-08-29 11:28:18 | 6 | |||||||||
|
Lens Resource Report Resource Website 50+ mentions |
Lens (RRID:SCR_022293) | data or information resource, portal, topical portal | Portal to search, analyze and manage patent and scholarly data. Serves global patent and scholarly knowledge as public good to inform science and technology enabled problem solving. | search, analyze, manage, patent, scholarly data, scholarly knowledge, public good, problem solving | Free, Freely available | SCR_022293 | 2026-08-29 11:27:56 | 70 | |||||||||||
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Pi-based Remote Acquisition Technology for Motion Capture project Resource Report Resource Website |
Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) | PiRATeMC | data or information resource, instrument resource, portal, project portal | Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub. | OpenBehavior, Instrument, behavior measurement, video analysis, realtime recording and analysis, video recording system, acquiring video data, open source recording system |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture |
DOI:10.1101/2021.07.23.453577 | Free, Freely available | SCR_022325 | Pi-based Remote Acquisition Technology for Motion Capture | 2026-08-29 11:27:57 | 0 | |||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | data or information resource, instrument resource, portal, project portal | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | Raspberry Pi based auditory stimulus generator project | 2026-08-29 11:27:46 | 0 | |||||||
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Meta Essentials Resource Report Resource Website 10+ mentions |
Meta Essentials (RRID:SCR_022464) | data analysis software, data processing software, software application, software resource | Software tool for meta analysis. Facilitates integration and synthesis of effect sizes from different studies. Consists of set of workbooks designed for Microsoft Excel that automatically produces all required statistics, tables, figures, and more. | meta analysis, relationship between independent and dependent variable analysis | DOI:10.1002/jrsm.1260 | Free, Available for download, Freely available | SCR_022464 | Meta-Essentials | 2026-08-29 11:28:19 | 35 | |||||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | data processing software, data visualization software, software application, software resource | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | 2026-08-29 11:27:47 | 0 | ||||||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | data analysis software, data processing software, software application, software resource | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | ABA project | 2026-08-29 11:27:46 | 0 | ||||||
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FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | data analysis software, data processing software, data visualization software, software application, software resource | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab, https://flybrainlab.fruitflybrain.org/ | SCR_022337 | 2026-08-29 11:28:18 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | data analysis software, data processing software, software application, software resource | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-08-29 11:27:46 | 0 | ||||||||
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BD Biosciences: FACSymphony A5 SE Cell Analyzer Resource Report Resource Website 1+ mentions |
BD Biosciences: FACSymphony A5 SE Cell Analyzer (RRID:SCR_022674) | instrument resource | Flow cytometer gains full visible spectrum coverage to collect all light emitted without need for filter changes, increasing dye flexibility and number of simultaneous colors. Uses unmix spectral data live in BD FACSDiva Software while retaining familiar compensation workflow. May improve resolution of difficult cells and populations using autofluorescence unmixing. | Flow cytometer, cell analyzer, unmix spectral data live, difficult cells resolution, autofluorescence unmixing, instrument, equipment, USEDit | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022674.pdf | Model_Number_FACSymphony_A5_SE | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/BD-FACSymphony-A5-SE-Brochure1.pdf | SCR_022674 | BD FACSymphony™ A5 SE Cell Analyzer, BD FACSymphony A5 SE | 2026-08-29 11:28:06 | 5 | |||||||
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SciReq: flexiVent system Resource Report Resource Website 1+ mentions |
SciReq: flexiVent system (RRID:SCR_022673) | instrument resource | System for small animal pulmonary function. Used for in vivo respiratory mechanics measurements. Goes beyond traditional resistance and compliance mechanics of pulmonary ventilation, and captures details about mechanical properties of conducting airways, terminal airways and parenchyma. Achieves sensitivity and reproducibility by precisely controlling experimental conditions. | USEDit, instrument, equipment, SCIREQ, animal pulmonary function, in vivo respiratory mechanics measurements, pulmonary ventilation | is listed by: USEDit | Restricted | SCR_022673 | SCIREQ flexiVent system | 2026-08-29 11:27:48 | 4 |
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