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https://www.mitochondriasci.com/biomarkers-and-therapeutic-targets.html

Creative Biogene service for discovery of disease specific proteins associated with mitochondrial epigenetic products, which can be used as molecular targets for new drug design and provide molecular markers for early diagnosis of diseases.

Proper citation: Creative Biogene Mitochondrial Biomarkers and Therapeutic Targets Service Resource (RRID:SCR_022240) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/alexmascension/triku

Software tool as feature selection method based on nearest neighbors for single-cell data.

Proper citation: triku (RRID:SCR_020977) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3doc/

Project related to animals learned perform action in order to achieve reward. Fully 3D printable chamber able to perform operant conditioning using off-the-shelf, low-cost optical and electronic components, that can be reproduced rigorously in any laboratory equipped with 3D printer.

Proper citation: 3DOC (RRID:SCR_021547) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/physiological-and-pathological-modifications.html

Provides multi species mitochondrial epigenetic analysis and customizes appropriate research route. Providies services on epigenetic characteristics of mitochondria under different physiological and pathological conditions.

Proper citation: Creative Biogene Mitochondrial Physiological and Pathological Modifications Service Resource (RRID:SCR_022239) Copy   

•   Source: SciCrunch Registry

https://github.com/broadinstitute/Drop-seq

Software Java tools for analyzing Drop-seq data. Used to analyze gene expression from thousands of individual cells simultaneously. Analyzes mRNA transcripts while remembering origin cell transcript.

Proper citation: Drop-seq tools (RRID:SCR_018142) Copy   

•   Source: SciCrunch Registry

https://github.com/lkmklsmn/DrivAER

Software tool as method for identification of driving transcriptional programs based on AutoEncoder derived Relevance scores. Infers relevance scores for transcriptional programs with respect to specified outcomes of interest in single-cell RNA sequencing data, such as psuedotemporal ordering or disease status.Used for manifold interpretation in scRNA-seq data.

Proper citation: DrivAER (RRID:SCR_019076) Copy   

•   Source: SciCrunch Registry

https://github.com/CEGRcode/stencil

Web engine for visualizing and sharing life science datasets.Designed to organize, visualize, and enable sharing of interactive genomic data visualizations. Provides ability to inspect and interpret sequencing data, without requiring programming expertise.

Proper citation: STENCIL (RRID:SCR_021878) Copy   

•   Source: SciCrunch Registry

http://www.imgt.org/HighV-QUEST/home.action

Next generation B and T cell sequence alignment and characterization online surface by IMGT. Web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing.

Proper citation: IMGT HighV-QUEST (RRID:SCR_018196) Copy   

•   Source: SciCrunch Registry

https://gat.readthedocs.io/en/latest/

Software tool as simulation framework for testing association of genomic intervals. Used for estimating significance of overlap between multiple sets of genomic intervals. Estimates statistical significance based on simulation and controls for multiple tests using false discovery rate.

Proper citation: Genomic Association Tester (RRID:SCR_020949) Copy   

•   Source: SciCrunch Registry

https://pm4ngs.readthedocs.io/

Software tool to generate standard organizational structure for Next Generation Sequencing data analysis. Includes directory structure for project, several Jupyter notebooks for data management and CWL workflows for pipeline execution.

Proper citation: PM4NGS (RRID:SCR_019164) Copy   

•   Source: SciCrunch Registry

https://github.com/gtonkinhill/panaroo

Software pipeline for pangenome investigation. Shares information between genomes to correct errors. Can call large structural variants.Fast and scalable to over 10k bacterial genomes.

Proper citation: Panaroo (RRID:SCR_021090) Copy   

•   Source: SciCrunch Registry

https://www.creative-peptides.com/services/formulation-development.html

Service to determine optimal dosage form, composition and manufacturing route for pharmaceutical products.

Proper citation: Creative Peptides: Formulation Development Service Resource (RRID:SCR_022223) Copy   

•   Source: SciCrunch Registry

https://www.creative-peptides.com/services/peptide-lead-optimization.html

Provides optimized one stop solution for peptide lead drugs. Used to improve upon lead molecule that demonstrates activity at target of interest by optimizing its potency or selectivity at target and its absorption, distribution, metabolism and elimination properties.

Proper citation: Creative Peptides: Peptide Lead Optimization Service Resource (RRID:SCR_022222) Copy   

•   Source: SciCrunch Registry

https://www.creative-peptides.com/services/peptide-drug-bioconjugations.html

Custom peptide synthesis, modification, and conjugation services involve chemical modification of peptide at highly specific sites. This allows for attachment of drugs or bioactive molecules though variety of coupling techniques.

Proper citation: Creative Peptides Peptide Drug Bioconjugations Service Resource (RRID:SCR_022221) Copy   

•   Source: SciCrunch Registry

https://github.com/Benson-Genomics-Lab/TRF

Software tool to locate and display tandem repeats in DNA sequences. Used to analyze DNA sequences.

Proper citation: Tandem Repeats Finder (RRID:SCR_022065) Copy   

•   Source: SciCrunch Registry

http://neomorph.salk.edu/omb/

Viewer for DNA Methylation Atlas of Mouse Brain at Single Cell Resolution. Browser to interactively explore single cell methylome dataset including exploration of methylation diversity of one gene at single-cell or cell-type level, exploration of cell type composition of adult mouse brain dissection regions and anatomical structures, explorartion of spatial distribution and methylation signature genes of one cell type.

Proper citation: Brain Cell Methylation Viewer (RRID:SCR_020954) Copy   

•   Source: SciCrunch Registry

https://www.creative-peptides.com/services/total-peptide-library-construction-technology.html

Service uses bioinformatics methods to compress peptide information, which can integrate information of multiple peptide into one peptide. Provides collection of small peptide of specific length and different sequences, which includes permutation and combination of various amino acid sequences in short peptide of this length.Total peptide library for new drug research and development.

Proper citation: Creative Peptides Total Peptide Library Construction Service Resource (RRID:SCR_022219) Copy   

•   Source: SciCrunch Registry

https://mass-spec.stanford.edu/instruments

System includes SQD2 as single quadrupole MS with Waters H-Class Acquity UPLC, operated as open access platform for trained users. SQ Detector2 is single quadrupole mass detector for chromatography compatible with range of chromatography platforms and ionization sources.

Proper citation: Waters: SQD2 LC/MS system (RRID:SCR_022217) Copy   

•   Source: SciCrunch Registry

http://old.protein.bio.unipd.it/cspritz/

Web tool for prediction of intrinsic protein disorder segments with annotation for homology, secondary structure and linear motifs.

Proper citation: CSpritz (RRID:SCR_021884) Copy   

•   Source: SciCrunch Registry

http://redrocksw.com/

Software tool for statistics and data visualization by Red Rock Software, Inc. Provides unparalleled chart selection, data analysis and graph customization capabilities.

Proper citation: Deltagraph (RRID:SCR_018084) Copy   

•   Source: SciCrunch Registry