Tools   Select Another Resource Report Type

https://github.com/dfguan/purge_dups

Software tool to purge haplotigs and overlaps in assembly based on read depth.Used for haplotypic duplication identification. Designed to remove haplotigs and contig overlaps in a de novo assembly based on read depth.

Proper citation: purge dups (RRID:SCR_021173) Copy   

•   Source: SciCrunch Registry

https://www.nationalacademies.org/news/2020/03/standing-committee-on-emerging-infectious-diseases-provides-rapid-response-to-government-on-key-coronavirus-questions

Committee provides expert consultation on data elements and systems design for modeling and decision making for COVID-19 pandemic. Assembled at request of White House Office of Science and Technology Policy and Office of Assistant Secretary for Preparedness and Response in response to COVID-19 outbreak. Provides expert consultations on several topics, such as surface stability and incubation, social distancing, and crisis standards of care.

Proper citation: NASEM Standing Committee on Emerging Infectious Diseases and 21st Century Health Threats (RRID:SCR_018289) Copy   

•   Source: SciCrunch Registry

http://services.mbi.ucla.edu/anisoscale/

Web server to indicate severity of anisotropy in data set. Degree of anisotropy is indicated by anisotropic delta B statistic.

Proper citation: UCLA Diffraction Anisotropy Server (RRID:SCR_018722) Copy   

•   Source: SciCrunch Registry

https://pasquali-lab.gitlab.io/umi4cats/

Software R package for analyzing UMI-4C chromatin contact data. Used to analyze chromatin contact profiles obtained by UMI-4C.

Proper citation: UMI4Cats (RRID:SCR_021780) Copy   

•   Source: SciCrunch Registry

https://github.com/hahnlab/CAFExp

Software tool for computational analysis of gene family evolution. Used for statistical analysis of evolution gene family sizes. Models evolution of gene family sizes over phylogeny.

Proper citation: Computational Analysis of gene Family Evolution (RRID:SCR_018924) Copy   

•   Source: SciCrunch Registry

https://pna.creative-peptides.com/services/modification-by-c-replacement.html

PNA modification service provides replacement of backbone C.

Proper citation: Creative Peptides PNA Modification by C Replacement Service Resource (RRID:SCR_022230) Copy   

•   Source: SciCrunch Registry

http://mtshasta.phys.washington.edu/website/SuperSegger.php

Software package as automated MATLAB based trainable image cell segmentation, fluorescence quantification and analysis suite. Used for high throughput time lapse fluorescence microscopy of in vivo bacterial cells. Robust image segmentation, analysis and lineage tracking of bacterial cells.

Proper citation: SuperSegger (RRID:SCR_018532) Copy   

•   Source: SciCrunch Registry

https://pna.creative-peptides.com/services/n-c-terminal-modification.html

Service to modify monomer backbone, including chemically active sites at both ends. Monomer N-terminal and C-terminal modification.

Proper citation: Creative Peptides PNA N/C Terminal Modification Service Resource (RRID:SCR_022229) Copy   

•   Source: SciCrunch Registry

https://github.com/sgoldenlab/simba

Open source software toolkit for computer classification of complex social behaviors in experimental animals.

Proper citation: Simple Behavior Analysis (RRID:SCR_021413) Copy   

•   Source: SciCrunch Registry

https://github.com/theislab/scanpy

Software Python tool for large scale single cell gene expression data analysis. Integrates analysis possibilities of established R-based frameworks, provides pre processing, visualization, graph-drawing and diffusion maps, clustering, identification of marker genes for clusters via differential expression tests and pseudo temporal ordering via diffusion pseudo time.

Proper citation: scanpy (RRID:SCR_018139) Copy   

•   Source: SciCrunch Registry

https://www.ncbi.nlm.nih.gov/labs/virus/vssi

Community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories. Integrative, value added resource designed to support retrieval, display and analysis of curated collection of virus sequences and large sequence datasets. Used to increase usability of data archived in GenBank and other NCBI repositories.

Proper citation: NCBI Virus (RRID:SCR_018253) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/biomarkers-and-therapeutic-targets.html

Creative Biogene service for discovery of disease specific proteins associated with mitochondrial epigenetic products, which can be used as molecular targets for new drug design and provide molecular markers for early diagnosis of diseases.

Proper citation: Creative Biogene Mitochondrial Biomarkers and Therapeutic Targets Service Resource (RRID:SCR_022240) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/alexmascension/triku

Software tool as feature selection method based on nearest neighbors for single-cell data.

Proper citation: triku (RRID:SCR_020977) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3doc/

Project related to animals learned perform action in order to achieve reward. Fully 3D printable chamber able to perform operant conditioning using off-the-shelf, low-cost optical and electronic components, that can be reproduced rigorously in any laboratory equipped with 3D printer.

Proper citation: 3DOC (RRID:SCR_021547) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/physiological-and-pathological-modifications.html

Provides multi species mitochondrial epigenetic analysis and customizes appropriate research route. Providies services on epigenetic characteristics of mitochondria under different physiological and pathological conditions.

Proper citation: Creative Biogene Mitochondrial Physiological and Pathological Modifications Service Resource (RRID:SCR_022239) Copy   

•   Source: SciCrunch Registry

https://github.com/broadinstitute/Drop-seq

Software Java tools for analyzing Drop-seq data. Used to analyze gene expression from thousands of individual cells simultaneously. Analyzes mRNA transcripts while remembering origin cell transcript.

Proper citation: Drop-seq tools (RRID:SCR_018142) Copy   

•   Source: SciCrunch Registry

https://github.com/lkmklsmn/DrivAER

Software tool as method for identification of driving transcriptional programs based on AutoEncoder derived Relevance scores. Infers relevance scores for transcriptional programs with respect to specified outcomes of interest in single-cell RNA sequencing data, such as psuedotemporal ordering or disease status.Used for manifold interpretation in scRNA-seq data.

Proper citation: DrivAER (RRID:SCR_019076) Copy   

•   Source: SciCrunch Registry

https://github.com/CEGRcode/stencil

Web engine for visualizing and sharing life science datasets.Designed to organize, visualize, and enable sharing of interactive genomic data visualizations. Provides ability to inspect and interpret sequencing data, without requiring programming expertise.

Proper citation: STENCIL (RRID:SCR_021878) Copy   

•   Source: SciCrunch Registry

http://www.imgt.org/HighV-QUEST/home.action

Next generation B and T cell sequence alignment and characterization online surface by IMGT. Web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing.

Proper citation: IMGT HighV-QUEST (RRID:SCR_018196) Copy   

•   Source: SciCrunch Registry

https://gat.readthedocs.io/en/latest/

Software tool as simulation framework for testing association of genomic intervals. Used for estimating significance of overlap between multiple sets of genomic intervals. Estimates statistical significance based on simulation and controls for multiple tests using false discovery rate.

Proper citation: Genomic Association Tester (RRID:SCR_020949) Copy   

•   Source: SciCrunch Registry