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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SunChrom: SunTissuePrep Tissue Section Preparation System Resource Report Resource Website |
SunChrom: SunTissuePrep Tissue Section Preparation System (RRID:SCR_023904) | instrument resource | System automates all tissue section preparation steps that were previously performed manually. Deparaffinization, rehydration, antigen-retrieval and pH-adjustment steps are performed efficiently, reliably and fully automated. | SunChrom Wissenschaftliche Geräte GmbH, SunChrom, tissue section, deparaffinization, rehydration, antigen-retrieval, pH-adjustment, automated preparation, | is related to: SunChrom | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023904.pdf | SCR_023904 | SunTissuePrep | 2026-08-29 11:28:24 | 0 | ||||||||
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EMMAX Resource Report Resource Website 1+ mentions |
EMMAX (RRID:SCR_024012) | softwre application | Software statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only a small fraction of complex traits, which allows us to avoid repetitive variance component estimation procedure, resulting in a significant amount of increase in computational time of association mapping using mixed model. | statistical test, human or model organism association mapping, sample structure, association mapping | is listed by: Debian | Free, Available for download, Freely available | OMICS_08871 | https://sources.debian.org/src/emmax/ | SCR_024012 | Efficient Mixed-Model Association eXpedited, emmax | 2026-08-29 11:28:25 | 6 | |||||||
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EMPeror Resource Report Resource Website 1+ mentions |
EMPeror (RRID:SCR_024013) | software resource, web application | Web browser enabled tool with versatile command line interface to perform exploratory investigations of 3D visualizations of microbial community data, such as principal coordinates plots. EMPeror includes set of controllers to modify features as function of metadata. Web interactive next generation tool for analysis, visualization and understanding of high throughput microbial ecology datasets. | visualizing high-throughput microbial community data, | is listed by: Debian | PMID:24280061 | Free, Available for download, Freely available | https://sources.debian.org/src/emperor/ | SCR_024013 | EMPEROR, Emperor, emperor | 2026-08-29 11:28:32 | 8 | |||||||
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EMBOSS explorer Resource Report Resource Website 1+ mentions |
EMBOSS explorer (RRID:SCR_024014) | software resource, web application | Web based graphical user interface to the EMBOSS suite of bioinformatics tools. | graphical user interface, EMBOSS suite, bioinformatics tools, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/emboss-explorer/ | SCR_024014 | emboss-explorer | 2026-08-29 11:28:25 | 1 | ||||||||
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Leica: Autostainer ST5010 XL Resource Report Resource Website 1+ mentions |
Leica: Autostainer ST5010 XL (RRID:SCR_023957) | instrument resource | Leica ST5010 Autostainer XL provides reproducible, consistent high quality staining, and increased workload throughput compared to manual staining. | Leica, staining, instrument, equipment, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023957.pdf | Model_Number_ST5010 XL | SCR_023957 | 2026-08-29 11:28:25 | 2 | |||||||||
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Beckman Coulter: Navios EX flow cytometer Resource Report Resource Website 1+ mentions |
Beckman Coulter: Navios EX flow cytometer (RRID:SCR_023797) | instrument resource | Designed specifically for clinical laboratory NAVIOS EX 10-color flow cytometer delivers performance with improved sample traceability and reporting functions. Navios EX has two optional ready-to-use IVD reagent systems, the Navios Tetra System for simultaneous identification and enumeration of T, B and NK lymphocytes and the ClearLLab 10C System – the first FDA cleared and CE marked integrated leukemia and lymphoma immunophenotyping system. | USEDit, instrument, equipment, flow cytometer, NAVIOS EX 10-color flow cytometer, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_023797.pdf | SCR_023797 | 2026-08-29 11:28:23 | 1 | ||||||||||
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dicompyler Resource Report Resource Website |
dicompyler (RRID:SCR_024006) | softwre application | Software extensible open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform DICOM RT viewer. | radiation therapy research platform, DICOM standard, cross platform DICOM RT viewer, | is listed by: Debian | DOI:10.1118/1.3468652 | Free, Available for download, Freely available | https://sources.debian.org/src/dicompyler/, https://github.com/bastula/dicompyler | SCR_024006 | 2026-08-29 11:28:06 | 0 | ||||||||
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Filtlong Resource Report Resource Website 100+ mentions |
Filtlong (RRID:SCR_024020) | data processing software, software application, software resource | Software tool for filtering long reads by quality.Can take set of long reads and produce smaller, better subset. Uses both read length and read identity when choosing which reads pass the filter. | filtering long reads by quality, read length, read identity, filtering reads, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/filtlong/ | SCR_024020 | filtlong | 2026-08-29 11:28:32 | 474 | ||||||||
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foreign Resource Report Resource Website 1+ mentions |
foreign (RRID:SCR_024025) | softwre application | Software tool for reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files. | Reading and writing data, 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', reading and writing some 'dBase' files, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/foreign/ | SCR_024025 | r-cran-foreign | 2026-08-29 11:28:06 | 3 | ||||||||
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BRain area Input Output Resource Report Resource Website |
BRain area Input Output (RRID:SCR_023846) | BRIO | data processing software, data visualization software, software application, software resource | Software visualization and analysis tool based on the Allen Brain Atlas connectivity database. Produces custom visualizations and figures for input output strength of specific brain area. | Allen Mouse Brain Connectivity Atlas, brain area visualization, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023846 | BRain area Input Output (BRIO) | 2026-08-29 11:28:23 | 0 | ||||||||
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Wind Integration National Dataset Toolkit Resource Report Resource Website 1+ mentions |
Wind Integration National Dataset Toolkit (RRID:SCR_023782) | WIND | data or information resource | United States national wind dataset. Provides high spatial and temporal resolution wind power, wind power forecast, and meteorological data for 7-year period at over 126,000 locations throughout continental United States. The largest publicly available wind power data set in the world. Used for wind energy integration studies. It is accessible through Web-based API. | United States, national wind dataset, wind energy integration studies, high spatial and temporal resolution wind power, wind power forecast, meteorological data, | U.S. Department of Energy | DOI:10.1016/j.apenergy.2015.03.121 | Free, Freely available | SCR_023782 | WIND Toolkit | 2026-08-29 11:28:23 | 1 | |||||||
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CRISPRscan Resource Report Resource Website 50+ mentions |
CRISPRscan (RRID:SCR_023777) | data access protocol, software resource, web service | Web tool for predictive sgRNA-scoring that captures sequence features affecting Cas9/sgRNA activity in vivo. Scoring algorithm to help select the best gRNAs for CRISPR. | predictive sgRNA-scoring, sequence features capture, affecting Cas9/sgRNA activity in vivo, select gRNAs for CRISPR, | has parent organization: Yale University; Connecticut; USA | Edward Mallinckrodt Jr Foundation ; NICHD R01 HD081379; NICHD R21 HD073768; NIGMS GM081602; NIGMS R01 GM101108; NIGMS R01 GM102251; NIGMS R01 GM103789; Swiss National Science Foundation |
Free, Freely available | SCR_023777 | 2026-08-29 11:28:30 | 85 | |||||||||
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CancerModels.Org Resource Report Resource Website 1+ mentions |
CancerModels.Org (RRID:SCR_023931) | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Cancer research platform that aggregates clinical, genomic and functional data from various types of patient derived cancer models, xenographs, organoids and cell lines. Open catalog of harmonised patient-derived cancer models. Standardises, harmonises and integrates clinical metadata, molecular and treatment-based data from academic and commercial providers worldwide. Data is FAIR and underpins generation and testing of new hypotheses in cancer mechanisms and personalised medicine development. PDCM Finder have expanded to organoids and cell lines and is now called CancerModels.Org. PDCM Finder was launched in April 2022 as successor of PDX Finder portal, which focused solely on patient-derived xenograft models. | FAIR data, clinical data, genomic data, functional data, patient derived, cancer models, xenographs, organoids, cell lines, | cancer | NCI R01 CA089713; NCI U24 CA204781 01; NCI U24 CA253539 01 |
PMID:36399494 | Free, Freely available | r3d100012961 | https://doi.org/10.17616/R31NJMHT | SCR_023931 | PDCM Finder, PDX Finder | 2026-08-29 11:28:24 | 8 | |||||
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Poly Peak Parser Resource Report Resource Website 1+ mentions |
Poly Peak Parser (RRID:SCR_023776) | data access protocol, software resource, web service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 25,2025. Web tool to parse Sanger sequencing chromatograms with double peaks into wildtype and alternative allele sequences. Used to separate chromatogram data containing ambiguous base calls into wildtype and mutant allele sequences.Used for identification of unknown indels using sanger sequencing of polymerase chain reaction products. | unknown indels identification, parse Sanger sequencing chromatograms, chromatograms with double peaks, separate chromatogram data, ambiguous base calls, wildtype sequences, mutant allele sequences, alternative allele sequences, | NHLBI 1F32HL115881; NHLBI U01HL0981; NHLBI U01HL098188 |
PMID:25160973 | THIS RESOURCE IS NO LONGER IN SERVICE | http://yosttools.genetics.utah.edu/PolyPeakParser/ | SCR_023776 | 2026-08-29 11:28:03 | 5 | ||||||||
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AIDAhisto Resource Report Resource Website |
AIDAhisto (RRID:SCR_023818) | data analysis software, data processing software, software application, software resource | Software atlas based imaging data analysis tool for quantitative mouse brain histology. Can automatically detect cells in histological mouse brain and spinal cord sections of interest. | Allen Mouse Brain Atlas, Spinal Cord Atlas, imaging data analysis, quantitative mouse brain histology, | is related to: Allen Institute for Brain Science | PMID:31415844 | Free, Available for download, Freely available | SCR_023818 | 2026-08-29 11:28:04 | 0 | |||||||||
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Agilent: 6495 Triple Quadrupole LC/MS Resource Report Resource Website 1+ mentions |
Agilent: 6495 Triple Quadrupole LC/MS (RRID:SCR_023937) | instrument resource | Agilent 6495C triple quadrupole LC/MS system increases capacity and sensitivity for targeted quantitation applications. Used to investigate more diverse and biologically relevant groups of targeted peptides, small molecules and metabolites in single experiment without compromising sensitivity, quantitative accuracy, or linearity. | Stanford, instrument, equipment, targeted quantitation applications, targeted peptides, small molecules, metabolites | is used by: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility | Open | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023937.pdf | Model_Number_Agilent_6495 | SCR_023937 | Stanford Agilent 6495 Triple Quadrupole LC/MS system, Agilent 6495 Triple Quadrupole LC/MS system | 2026-08-29 11:28:05 | 1 | |||||||
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Deepbinner Resource Report Resource Website |
Deepbinner (RRID:SCR_024001) | softwre application | Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads. | signal level demultiplexer, Oxford Nanopore reads, demultiplexing barcoded Oxford Nanopore sequencing reads, | is listed by: Debian | PMID:30458005 | Free, Available for download, Freely available | OMICS_30643 | https://sources.debian.org/src/deepbinner/ | SCR_024001 | deepbinner | 2026-08-29 11:28:25 | 0 | ||||||
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CTSim Resource Report Resource Website |
CTSim (RRID:SCR_024004) | simulation software, software application, software resource | Software tool to simulate process of transmitting X-rays through phantom objects. Reconstructs original phantom image from projections. Has wide array of image analysis and image processing functions. | Computed tomography simulator, reconstruct original phantom image from projections, reconstruct image, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/ctsim/ | SCR_024004 | ctsim, Open Source Computed Tomography Simulator | 2026-08-29 11:28:25 | 0 | ||||||||
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Malvern Panalytical MicroCal PEAQ-ITC analysis Resource Report Resource Website 1+ mentions |
Malvern Panalytical MicroCal PEAQ-ITC analysis (RRID:SCR_023795) | data analysis software, data processing software, software application, software resource | Software application for isothermal titration calorimetry performed on MicroCal PEAQ instrument by Malvern. | isothermal titration calorimetry, MicroCal PEAQ instrument, Malvern Panalytical, Isothermal Titration Calorimetry, | Free, Available for download, | SCR_023795 | Malvern Panalytical MicroCal PEAQ-ITC Analysis software, MicroCal PEAQ-ITC, MicroCal PEAQ-ITC Analysis software, MicroCal PEAQ-ITC Analysis Software v1.41 | 2026-08-29 11:28:30 | 9 | ||||||||||
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Leica: Thunder Imager Live Cell system Resource Report Resource Website 10+ mentions |
Leica: Thunder Imager Live Cell system (RRID:SCR_023794) | instrument resource | Advanced widefield microscope enabling use of 3D specimens with camera based fluorescence microscopes. System ensures low phototoxicity and photobleaching, i.e., higher throughput with optimal conditions. | Leica, USEDit, microscope, camera, 3D speciment, fluorescence microscope, imaging system, | is listed by: USEDit | Restricted | SCR_023794 | , Thunder Imager, Thunder Imaging system, THUNDER Imager Live Cell, THUNDER Imager | 2026-08-29 11:28:23 | 12 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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