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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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JWatcher Resource Report Resource Website 50+ mentions |
JWatcher (RRID:SCR_017595) | data acquisition software, data analysis software, data analytics software, data processing software, software application, software resource | Software Java tool for quantitative analysis of behavior. Used to address any theoretical problem that requires complex sequence of actions to be scored by human observer. Runs on microcomputer providing Java Virtual Machine[TM] and has been tested on Windows[TM] and Macintosh[TM] systems. Legacy version (version 0.9) works on older systems (Macintosh OS-9 and Windows-98), while Version 1.0 works well on Macintosh OS-X and Windows XP systems. JWatcher Video works best on Windows XP systems and has reduced functionality running in Macintosh OS-X. JWatcher-Palm can be used to acquire data on Palm OS[TM] equipped device and analyze it on your main computer. | Quantitative, analysis, behavior, theoretical, problem, action, scored, human, observer |
has parent organization: University of California at Los Angeles; California; USA has parent organization: Macquarie University; Sydney; Australia |
Australian Research Council ; Macquarie University ; NIMH R21 MH065226 |
Free, Available for download, Freely available | SCR_017595 | 2026-09-12 12:58:54 | 53 | |||||||||
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TIGS Resource Report Resource Website 1+ mentions |
TIGS (RRID:SCR_017565) | data or information resource, data repository, narrative resource, service resource, storage service resource, training material, workflow | Repository to share analysis procedure, data and help readers or reviewers to know more detail of this work, reproduce or make use of results they are interested in. | Share, analysis, procedure, data, tumor, immunogenicity | Free, Available for download, Freely available | SCR_017565 | Tumor Immunogenicity Score | 2026-09-12 12:58:54 | 1 | ||||||||||
|
ChemRICH Resource Report Resource Website 10+ mentions |
ChemRICH (RRID:SCR_017609) | analysis service resource, production service resource, service resource, software resource, web application | Software tool for chemical similarity enrichment analysis of metabolomics datasets. Used in studies to uncover biological mechanisms in organisms under genetic or environmental stress in system biology manner or finding risk factors for chronic diseases in exposome wise association studies using blood specimens. Allows users to realize pathway analysis. | Chemical, similarity, enrichment, analysis, metabolomic, dataset, genetic, environmental, stress, risk, factor, chronic, disease, exposome, association, blood, speciment |
is listed by: OMICtools has parent organization: University of California at Davis; California; USA |
PMID:29109515 | Free, Freely available | https://github.com/barupal/chemrich | SCR_017609 | 2026-09-12 12:58:54 | 26 | ||||||||
|
vbSPT Resource Report Resource Website 1+ mentions |
vbSPT (RRID:SCR_017554) | data analysis software, data processing software, software application, software resource | Software package for analysis of single particle diffusion trajectories, where diffusion constants switch randomly according to Markov process. Analytical tool to combine information from thousands of short single-molecule trajectories of intracellularly diffusing proteins. Has ability to learn number of diffusive states directly from data, in addition to model parameters such as transition rates and diffusion constants. | Analysis, single, particle, diffusion, trajectory, Markov, short, molecule, intracellularly, protein, data, transition, state | PMID:23396281 | Free, Available for download, Freely available | https://sourceforge.net/projects/vbspt/files/latest/download?source=files | SCR_017554 | variational Bayes single particle tracking | 2026-09-12 12:58:54 | 3 | ||||||||
|
Rotor-Gene 6000 series software Resource Report Resource Website 1+ mentions |
Rotor-Gene 6000 series software (RRID:SCR_017552) | data analysis software, data processing software, software application, software resource | Rotor-Gene real-time analysis software system for ROTOR GENE 6000 REAL-TIME PCR machine. Software has been refined to provide an intuitive, Wizard driven interface, enabling flexibility and automation. Build-in extensive analysis, graphing and statistical functions. Unlimited use software license for Windows XP, Pentium IV (2GHz) or higher PC. | Rotor, Gene, 6000 Real Time, PCR machine, analysis, graphing, statistical, function | Free, Available for download, Freely available | https://www.baylor.edu/content/services/document.php/187886.pd | SCR_017552 | Rotor-Gene 6000 series software 1.7 | 2026-09-12 12:58:54 | 3 | |||||||||
|
LabChart Reader Resource Report Resource Website 100+ mentions |
LabChart Reader (RRID:SCR_017551) | data analysis software, data processing software, software application, software resource | LabChart data analysis software creates a platform for all of your recording devices to work together, allowing you to acquire biological signals from multiple sources simultaneously and apply advanced calculations and plots as your experiment unfolds. LabChart Reader is free version of software that allows to analyse with some limitations. LabChart Reader doesn’t allow saving of data - export image only. Has data pad for analysis. | Adinstruments, LabChart, data, analysis, calculation, plot | is related to: LabChart | https://www.adinstruments.com/products/labchart/versions-and-licenses | SCR_017551 | LabChart Reader software 8.1, LabChart Reader software | 2026-09-12 12:58:54 | 144 | |||||||||
|
Mesquite Resource Report Resource Website 100+ mentions |
Mesquite (RRID:SCR_017994) | data analysis software, data processing software, software application, software resource | Software tool as modular system for evolutionary analysis. Software for evolutionary biology, designed to organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Analyses available depend on modules installed. Comes with many packages already installed. | Modular, evolutionary, analysis, organize, comparative data, organism, phylogenetic, population genetic, non-pylogenetic | is listed by: Debian | David and Lucile Packard Foundation ; NSERC Discovery grant ; NSF ; NSF DEB 1258220 |
Free, Available for download, Freely available | https://sources.debian.org/src/mesquite/ | SCR_017994 | Mesquite 3.04, Mesquite 3.61 | 2026-09-12 12:58:56 | 183 | |||||||
|
VG Studio MAX Resource Report Resource Website 10+ mentions |
VG Studio MAX (RRID:SCR_017997) | data analysis software, data processing software, data visualization software, software application, software resource | Software tool for analysis and processing of µCT data, e.g. compiling virtual 3D models of morphological structures in site by Volume Graphics GmbH. Used for visualization of CT data. | Computed tomography, CT, data, analysis, processing, 3D, visualization, CT data | Restricted | SCR_017997 | VGStudio MAX, VG Studio MAX 3.1, VGStudio | 2026-09-12 12:58:56 | 11 | ||||||||||
|
LibreOfficeCalc Resource Report Resource Website 10+ mentions |
LibreOfficeCalc (RRID:SCR_018013) | data analysis software, data management software, data processing software, data visualization software, software application, software resource | Open source software application with data analysis tools and spreadsheet templates used to manage, process and visualize data. LibreOffice Calc is spreadsheet component of LibreOffice software package developed by Document Foundation. | Data, analysis, spreadsheet, template, process, visualize | Free, Available for download, Freely available | SCR_018013 | 2026-09-12 12:58:56 | 33 | |||||||||||
|
Bio-Rad: Bio-Plex 200 System Resource Report Resource Website 100+ mentions |
Bio-Rad: Bio-Plex 200 System (RRID:SCR_018026) | instrument resource | Suspension array system which offers protein and nucleic acid researchers multiplex assay solution permiting analysis of up to 100 biomolecules in single sample. | ABRF, suspension array reader, protein, nucleid acid, assay, analysis, instrument, equipment, Bio-Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018026.pdf | https://rai.unam.mx/manuales/umyp_Manual_Bioplex.pdf | SCR_018026 | , Bio-Plex 200 System, Bio-Plex 200 Suspension Array System, BioRad suspension array reader | 2026-09-12 12:58:56 | 153 | ||||||||
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Luminex: 100 Flow Cytometry Analyzer System Resource Report Resource Website 10+ mentions |
Luminex: 100 Flow Cytometry Analyzer System (RRID:SCR_018025) | instrument resource | Flow cytometry analyzer system for individual labs that performs up to 100 different tests in single reaction volume and can use either magnetic beads or plain polystyrene beads. | ABRF, suspension array analyzer, flow cytometry, magnetic bead, polystyrene bead, analysis, Luminex Corporation, instrument, equipment |
is listed by: USEDit is related to: Thermo Fisher: Luminex 200 Instrument System |
https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018025.pdf | https://www.luminexcorp.com/research-luminex-100200/ | SCR_018025 | Luminex 100 System | 2026-09-12 12:58:56 | 21 | ||||||||
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NeuroChaT Resource Report Resource Website 1+ mentions |
NeuroChaT (RRID:SCR_018020) | data analysis software, data processing software, software application, software resource, software toolkit | Software open source python toolbox to analyse neuronal signals recorded in vivo in freely behaving animal, with particular emphasis on spatial coding. Can be used as application programming interface, or as general user interface, and is designed to help simplify adoption of standardised analyses for behavioural neurophysiology and facilitate open data sharing and collaboration between laboratories. | Neuronal signal, analysis, freely behaving animal, spatial coding, behavioural neurophysiology, data, bio.tools |
is listed by: Debian is listed by: bio.tools |
Wellcome Trust | DOI:12688/wellcomeopenres.15533.1 | Free, Available for download, Freely available | biotools:NeuroChat | https://bio.tools/NeuroChaT | SCR_018020 | Neuron Characterisation Toolbox | 2026-09-12 12:58:56 | 2 | |||||
|
PEMA Resource Report Resource Website 1+ mentions |
PEMA (RRID:SCR_017676) | data analysis software, data processing software, software application, software resource, software toolkit | Software as flexible pipeline for environmental DNA metabarcoding analysis of 16S/18S rRNA, ITS and COI marker genes. Performs reads’ pre-processing, clustering to (M)OTUs and taxonomy assignment for 16S rRNA and COI marker gene data. Allows users to explore alternative algorithms for specific steps of pipeline without need of complete re-execution. | Environmental, DNA, metabarcoding, analysis, ASVs, OTUs, 16S rRNA, COI, ITS, marker, gene, clustering, taxonomy, bio.tools |
is listed by: bio.tools is listed by: Debian |
DOI:10.1101/709113 | Free, Freely available | biotools:PEMA | https://docs.google.com/presentation/d/1lVH23DPa2NDNBhVvOTRoip8mraw8zfw8VQwbK4vkB1U/edit?fbclid=IwAR14PpWfPtxB8lLBBnoxs7UbG3IJfkArrJBS5f2kRA__kvGDUb8wiJ2Cy_s#slide=id.g57f092f54d_1_21, https://bio.tools/PEMA | SCR_017676 | Pipeline for Environmental DNA Metabarcoding Analysis | 2026-09-12 12:58:55 | 1 | ||||||
|
CNV webstore Resource Report Resource Website 1+ mentions |
CNV webstore (RRID:SCR_018007) | data analysis software, data processing software, data storage software, data visualization software, software application, software resource, software toolkit | Integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Platform to streamline processing and downstream interpretation of microarray data in clinical context. Analysis tools include CNV analysis, parent of origin and uniparental disomy detection. Interpretation tools include data visualisation, gene prioritisation, automated PubMed searching, linking data to several genome browsers and annotation of CNVs based on several public databases. | Copy number variation, data, Illumina, CNV report, raw data, microarray data, clinical, analysis, visualization, gene prioritisation, PubMed searching, annotation, | Belgian National Fund for Scientific Research - Flanders ; Marguerite-Marie Delacroix foundation |
PMID:21208430 | http://cnv-webstore.ua.ac.be/cnv-webstore/ | SCR_018007 | CNV-webstore, CNV-WebStore | 2026-09-12 12:58:56 | 1 | ||||||||
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MicroDynamix Resource Report Resource Website 1+ mentions |
MicroDynamix (RRID:SCR_017671) | data processing software, image analysis software, image reconstruction software, software application, software resource | Software tool for dendritic spine analysis that enables to visualize and quantify spine morphology over time. After loading image data acquired at different time points from in vivo and in vitro imaging sessions, automatically aligns images in 3D, then reconstructs dendritic branches, detects dendritic spines, and identifies important metrics such as length, thickness, and overall number, for accurate quantitative comparison. | MBF Bioscience, dendritic, spine, analysis, visualize, quantify, morphology, image, data, 3D, reconstruct | Restricted | SCR_017671 | 2026-09-12 12:58:55 | 1 | |||||||||||
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MAJIQ Resource Report Resource Website 10+ mentions |
MAJIQ (RRID:SCR_016706) | MAJIQ, | data analysis software, data processing software, software application, software resource, software toolkit | Software package to detect and quantify local splicing variations (LSV) from RNA-Seq data. Used to automatically detect and downweight outliers in RNA-Seq datasets with replicates for differential splicing (SD) analysis. | detect, quantify, local, splicing, variation, RNA-Seq, data, replicate, differential, analysis | has parent organization: University of Pennsylvania; Philadelphia; USA | NIA R01 AG046544; Penn Institute for Biomedical Informatics Pilot |
PMID:29236961 | Free, Available for download, Freely available, Tutorial available | SCR_016706 | MAJIQ, MAJIQ/Viola, Modeling Alternative Junction Inclusion Quantification | 2026-09-12 12:58:43 | 33 | ||||||
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CARD Resource Report Resource Website 10+ mentions |
CARD (RRID:SCR_016602) | CARD | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource, software resource, web application | Web application for integrated analysis and interactive visualization of RNA interference (RNAi) screening data. | integrated, analysis, interactive, visualization, RNA, interfernce, screening, data, bio.tools |
is listed by: bio.tools is listed by: Debian |
Australasian Genomics Technologies Association ; Australian Cancer Research Foundation ; Australian Government’s Education Investment Fund ; Brockhoff Foundation ; Peter MacCallum Cancer Centre Foundation ; Victorian Department of Industry ; Innovation and Regional Development |
PMID:26902267 | Free, Freely available | biotools:CARD | https://bio.tools/CARD | SCR_016602 | CARD, Comprehensive Analysis of RNAi-screen Data | 2026-09-12 12:58:42 | 20 | ||||
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MetaboAnalystR Resource Report Resource Website 500+ mentions |
MetaboAnalystR (RRID:SCR_016723) | data analysis software, data processing software, data visualization software, software application, software resource | Software R package for comprehensive analysis of metabolomics data. Contains the R functions and libraries underlying MetaboAnalyst web server, including functions for metabolomic data analysis, visualization, and functional interpretation. | analysis, metabolomic, data, analysis, vixualization, functional, interpretation | works with: MetaboAnalyst | Canada Research Chairs ; McGill Graduate Dean Award ; Natural Sciences and Engineering Research Council of Canada |
PMID:29955821 | Free, Available for download, Freely available | SCR_016723 | 2026-09-12 12:58:43 | 525 | ||||||||
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Particle Metrix: ZetaView Nanoparticle Tracking Analyzer Resource Report Resource Website 100+ mentions |
Particle Metrix: ZetaView Nanoparticle Tracking Analyzer (RRID:SCR_016647) | ZetaView NTA | instrument resource | Instrument for nanoparticle tracking analysis. A semi-automated method for the characterization of extracellular vesicles with associated analysis software by ParticleMetrix GmbH. | instrument, nanoparticle, tracking, analysis, ParticleMetrix GmbH, extracellular, vesicles, method | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_016647.pdf | https://partoshar.com/administrator/files/UploadFile/DLS/Zeta-View/Catalog/zetaview-en.pdf | SCR_016647 | ZetaView NTA, ZetaView Nanoparticle Tracking Analyzer | 2026-09-12 12:58:42 | 293 | ||||||||
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Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS Resource Report Resource Website 500+ mentions |
Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS (RRID:SCR_016657) | data acquisition software, data analysis software, data analytics software, data processing software, software application, software resource, software toolkit | Software tools for compound-centric data mining and navigation. Used to identify compounds in overlapping and co-eluting peaks with feature extraction and correlation algorithms for chromatographic separation. Used for separating true signals from noise. | compound, centric, data, mining, navigation, chromatic, separation, coeluting, peak, signal, noise, mass, spectrometry, analysis, qualitative |
is listed by: OMICtools is related to: Agilent Masshunter Quantitative Analysis software has parent organization: Agilent Technologies |
SCR_016657 | 2026-09-12 12:58:42 | 740 |
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