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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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EIDORS:Electrical Impedance Tomography and Diffuse Optical Tomography Reconstruction Software Resource Report Resource Website 1+ mentions |
EIDORS:Electrical Impedance Tomography and Diffuse Optical Tomography Reconstruction Software (RRID:SCR_019262) | EIDORS | data processing software, image analysis software, image reconstruction software, software application, software resource | Free software algorithms for forward and inverse modelling for Electrical Impedance Tomography (EIT) and Diffusion based Optical Tomography, in medical and industrial settings, and to share data and promote collaboration between groups working these fields. | Modelling, inverse modelling, forward modelling, Electrical Impedance Tomography, Diffusion based Optical Tomography, share data | Free, Available for download, Freely available | SCR_019262 | SciCrunch Registry | 2026-10-10 12:40:27 | 4 | ||||||||||
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National Collaborative on Childhood Obesity Research Resource Report Resource Website 1+ mentions |
National Collaborative on Childhood Obesity Research (RRID:SCR_019150) | NCCOR | data or information resource, disease-related portal, organization portal, portal, topical portal | Brings together Centers for Disease Control and Prevention, National Institutes of Health, Robert Wood Johnson Foundation, and U.S. Department of Agriculture to accelerate progress in reducing childhood obesity in America, to manage projects and reach common goals, to coordinate funding to make the most of available resources, to share insights and expertise to strengthen research. NCCOR focuses on efforts that have to benefit children, teens, and their families, and communities in which they live. | Childhood obesity, reducing childhood obesity, coordinate funding, coordinate projects, benefit children | Obesity | Free, Freely available | SCR_019150 | SciCrunch Registry | 2026-10-10 12:40:34 | 1 | |||||||||
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CMGUI Resource Report Resource Website |
CMGUI (RRID:SCR_019271) | 3d visualization software, data processing software, data visualization software, software application, software resource, software toolkit, standalone software | Standalone application for 3D visualisation and manipulation of mathematical field models. Cmgui is part of Continuum Mechanics, Imaging, Signal processing, System identification mathematical modelling environment. Generic open source modelling and visualisation package used to enable researchers to visualise biomedical images alongside dynamic geometry fields from computer models of cells, tissues and organs. | 3D visualisation, 3D manipulation, mathematical field models, visualise biomedical images, dynamic geometry fields, cell computer models, tissue computer models, organ computer models, Continuum Mechanics, Imaging, Signal processing, System identification, OpenCMISS | Free, Available for download, Freely available | http://physiomeproject.org/software/opencmiss/cmgui/download | SCR_019271 | SciCrunch Registry | Cmgui, Cmgui v3.0 | 2026-10-10 12:41:03 | 0 | |||||||||
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DeePhage Resource Report Resource Website 1+ mentions |
DeePhage (RRID:SCR_019243) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tool to distinguish virulent and temperate phage derived sequences in metavirome data with deep learning approach. Used to identify virome sequences as temperate phage derived or virulent phage derived fragments. | Metavirome data, identify virome sequences, derived fragment, distinguish phage derived sequences, temperate phage sequences, virulent phage sequences, deep learning | https://github.com/shufangwu/DeePhage | SCR_019243 | SciCrunch Registry | 2026-10-10 12:41:02 | 4 | |||||||||||
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Fruit Fly Brain Observatory Resource Report Resource Website 1+ mentions |
Fruit Fly Brain Observatory (RRID:SCR_019244) | FFBO | data or information resource, data processing software, data repository, portal, service resource, software application, software resource, storage service resource, topical portal | Open source software platform for studying fruit fly brain function, and for investigating fruit fly brain disease models that are highly relevant to mechanisms of human neurological and psychiatric disorders. Collaborative ecosystem for accelerating discovery of functional logic of fruit fly brain. Includes FlyBrainLab and BrainMapsViz. Stores and integrates fruit fly brain research data. Repository of tools and methods to build, emulate and compare fruit fly brain models in health and disease. Open framework for fruit fly brain data processing and model execution. | Fruit fly brain function, neural circuits, fly brain data, brain function data, neuron location, neuron morphology, neuron biophysical properties, genetic data, | human neurological and psychiatric disorders, Epilepsy, Parkinson | Free, Freely available | SCR_019244 | SciCrunch Registry | 2026-10-10 12:40:35 | 3 | |||||||||
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PhyloPic Resource Report Resource Website 500+ mentions |
PhyloPic (RRID:SCR_019139) | data access protocol, data or information resource, data repository, service resource, software resource, storage service resource, web service | Silhouette images of animals, plants, and other life forms, available for reuse. Database stores reusable silhouette images and phylogenetic taxonomy of all organisms. Each image is associated with one or more taxonomic names and indicates roughly what ancestral member of each taxon looked like. | Silhouette images, phylogenetic taxonomy, taxonomic name, taxon ancestral member, supertaxa, subtaxa, image related taxa, FASEB list | Free, Freely available | SCR_019139 | SciCrunch Registry | 2026-10-10 12:41:02 | 714 | |||||||||||
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ScanNeo Resource Report Resource Website 1+ mentions |
ScanNeo (RRID:SCR_019253) | data analysis software, data processing software, sequence analysis software, software application, software resource | Open software pipeline for analyzing RNA-seq to predict neoepitopes derived from small to large sized indels. Used for identifying indel derived neoantigens using RNA-Seq data. | RNA-Seq, neoepitopes, indel, indel derived neoantigen, RNA-Seq data, neoantigen identification | PMID:30887025 | Free, Available for download, Freely available | SCR_019253 | SciCrunch Registry | 2026-10-10 12:40:27 | 4 | ||||||||||
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Interact Resource Report Resource Website 1+ mentions |
Interact (RRID:SCR_019254) | software resource | Software platform for synchronized viewing and analysis of video footage and audio files in observational research by Mangold International GmbH. Qualitative and quantitative video coding software. | Synchronized viewing, analysis, video footage, audio files, observational research, video coding | Restricted | SCR_019254 | SciCrunch Registry | 2026-10-10 12:41:03 | 5 | |||||||||||
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BiG-SLiCE Resource Report Resource Website 1+ mentions |
BiG-SLiCE (RRID:SCR_019130) | data analysis software, data processing software, software application, software resource | Software tool to perform large scale clustering analysis of Biosynthetic Gene Cluster data. | Biosynthetic Gene, gene clusters, super linear clustering, clustering data analysis, bio.tools |
is listed by: bio.tools is listed by: Debian |
Graduate School for Experimental Plant Sciences Netherlands ; Netherlands eScience Center Accelerating Scientific Discoveries Grant |
DOI:10.1101/2020.08.17.240838 | Free, Available for download, Freely available | biotools:big_slice | https://bio.tools/big_slice | SCR_019130 | SciCrunch Registry | Biosynthetic Gene clusters - Super Linear Clustering Engine | 2026-10-10 12:40:25 | 6 | |||||
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cthist Resource Report Resource Website 1+ mentions |
cthist (RRID:SCR_019229) | software resource | Software tool for mass downloading of historical clinical trial data from ClinicalTrials.gov. | Mass downloading, historical clinical trial data, ClinicalTrials.gov, trial registry number | is related to: ClinicalTrials.gov | Free, Available for download, Freely available | https://github.com/bgcarlisle/cthist | SCR_019229 | SciCrunch Registry | 2026-10-10 12:40:26 | 2 | |||||||||
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igraph Resource Report Resource Website 100+ mentions |
igraph (RRID:SCR_019225) | data analysis software, data processing software, data visualization software, network analysis software, network graph visualization software, software application, software resource, software toolkit | Software package for graphs and network analysis. Provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.Can be programmed in R, Python, Mathematica, C/C Plus Plus. | Graphs analysis, network analysis, generating graph function, graph visualization |
is listed by: CRAN is listed by: SoftCite is related to: igraph for R |
Free, Available for download, Freely available | https://igraph.org/, https://github.com/igraph/igraph/releases/tag/0.8.4 | SCR_019225 | SciCrunch Registry | igraph 0.8.4, igraph 1.2.6 | 2026-10-10 12:40:26 | 432 | ||||||||
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COVID-19 Data Repository Resource Report Resource Website 1+ mentions |
COVID-19 Data Repository (RRID:SCR_019105) | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Repository for data examining social, behavioral, public health, and economic impact of novel coronavirus global pandemic. Free self publishing option for any researcher who wants to share data related to COVID-19. Deposits should include all data, annotated program code, command files, and documentation necessary to understand data collection and/or replicate research findings. | COVID-19, impact data, novel coronavirus global pandemic, novel coronavirus, data |
uses: DataCite is related to: OpenICPSR has parent organization: University of Michigan; Ann Arbor; USA |
COVID-19 | Free, Freely available | https://doi.org/10.3886, https://dx.doi.org/10.3886 | SCR_019105 | SciCrunch Registry | 2026-10-10 12:41:01 | 1 | ||||||||
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Authentication Reports Resource Report Resource Website |
Authentication Reports (RRID:SCR_019226) | data access protocol, software resource, web service | dkNET service that assists researchers in preparing authentication plans for cell lines or antibodies to comply with NIH Submission Policy when submitting proposal or publication. Automated tool to enable researchers to create customized report based on key biological resources they plan to use. These customized reports provide additional information such as known problems with particular cell line or antibody. | dkNET Authentication Report, preparing cell lines authentication plans, preparing antibodies authentication plans, NIH Submission Policy, proposal submitting, publication submitting, customized report creation | Free, Freely available | SCR_019226 | SciCrunch Registry | 2026-10-10 12:41:02 | 0 | |||||||||||
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Parliament2 Resource Report Resource Website 1+ mentions |
Parliament2 (RRID:SCR_019187) | data analysis software, data processing software, software application, software resource, software toolkit | Software tool to identify structural variants in given sample relative to reference genome. Runs combination of tools to generate structural variant calls on whole genome sequencing data. | structural variants identification, reference genome, structural variant calls generation, whole genome sequencing data, sequencing data, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:parliament2 | https://bio.tools/parliament2 | SCR_019187 | SciCrunch Registry | 2026-10-10 12:41:02 | 5 | ||||||||
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NEMAR Resource Report Resource Website 1+ mentions |
NEMAR (RRID:SCR_019100) | data or information resource, portal, topical portal | Portal for human electrophysiological data, supports, sharing and in depth analysis of identified human neuroelectromagnetic brain data including scalp EEG, its magnetic counterpart, MEG, and, intracranial iEEG and ECoG. Open access EEG and MEG data archives, analysis, and visualization. Neuroelectromagnetic data, tools, and compute resource. | Human electrophysiological data, neuroelectromagnetic data, neuroelectromagnetic tools, data archives, data analysis, data visualization, EEG data, MEG data, iEEG data, ECoG data, brain data | is affiliated with: OpenNeuro | NIH | Free, Freely available | SCR_019100 | SciCrunch Registry | NEuroelectroMagnetic data Archive and tools Resource | 2026-10-10 12:40:33 | 9 | ||||||||
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epitopepredict Resource Report Resource Website 1+ mentions |
epitopepredict (RRID:SCR_019221) | simulation software, software application, software resource | Open source software tool as programmatic framework and command line tool designed to aid process of MHC binding prediction. Provides access to multiple binding prediction algorithms under single interface and scales for whole genomes using multiple target MHC alleles.Software should be run on Linux operating system. Ubuntu is recommended but most major distributions will be fine. Windows is not supported. | Protein sequence, MHC binding prediction, whole genomes, multiple target MHC allele, epitope prediction, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:epitopepredict | https://epitopepredict.readthedocs.io/en/latest/, https://bio.tools/epitopepredict | SCR_019221 | SciCrunch Registry | 2026-10-10 12:41:02 | 2 | ||||||||
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CAIRN Resource Report Resource Website |
CAIRN (RRID:SCR_019101) | data access protocol, data processing software, data visualization software, software application, software resource, web service | Web tool to graph all copy number alterations present in segment file. Custom data is permitted. Allows to display copy number alterations which overlap user specified region, to quantify number of amplified CNAs and deleted CNAs. Visualization tool to explore copy number alterations discovered in published cancer datasets. Intended to help oncology community observe of relative rates of amplification, deletion, and mutation of interesting genes and regions. | Deleted CNAs quantification, Copy Number Alterations, segment file, data visualization, published cancer datasets CNAs, amplified CNA quantification | NCI CA102310; NCI CA107263; NCI CA177519; NCI CA207729; NCI P30 CA138313; NIA AG033082; NIGMS GM132055; Nine Girls Ask Foundation |
PMID:31923184 | Free, Available for download, Freely available | https://github.com/jrdelaney/CAIRN | SCR_019101 | SciCrunch Registry | Copy Alterations Intuitive Rendering Navigator | 2026-10-10 12:40:25 | 0 | |||||||
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ABF Utility Resource Report Resource Website 1+ mentions |
ABF Utility (RRID:SCR_019222) | data analysis software, data processing software, software application, software resource | Software tool to convert data files from Mac program such as Igor and Pulse or John Dempster CDR, WinTida, to ABF formats and analyze them with Mini Analysis Program. | Convert data file, ABF format, data file, data format | Restricted | SCR_019224 | SCR_019222 | SciCrunch Registry | 2026-10-10 12:40:35 | 4 | ||||||||||
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OpenClinica Resource Report Resource Website 10+ mentions |
OpenClinica (RRID:SCR_019223) | data acquisition software, data processing software, software application, software resource | Web platform for electronic data capture by OpenClinica, LLC. Used as clinical trial management system. | Clinical trial, data management system, clinical trial management system, clinical data, clinical data management | is listed by: SoftCite | PMID:21893916 | Restricted | https://www.openclinica.com/community-edition-open-source-edc/ | SCR_019223 | SciCrunch Registry | 2026-10-10 12:40:26 | 46 | ||||||||
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Computational Anatomy Toolbox for SPM Resource Report Resource Website 500+ mentions |
Computational Anatomy Toolbox for SPM (RRID:SCR_019184) | CAT | data analysis software, data processing software, software application, software resource, software toolkit | Software toolbox as extension to SPM12 to provide computational anatomy. This covers diverse morphometric methods such as voxel based morphometry, surface based morphometry, deformation based morphometry, and region or label based morphometry. | MRI, neuroimaging, brain, voxel based morphometry, surface based morphometry, deformation based morphometry, label based morphometry, region based morphometry | works with: SPM | Free, Available for download, Freely available | SCR_019184 | SciCrunch Registry | CAT12 | 2026-10-10 12:40:26 | 581 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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