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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Brain Bee Resource Report Resource Website 1+ mentions |
Brain Bee (RRID:SCR_002248) | IBB | k-12 program resource, training resource | A world-wide neuroscience competition for high school students that aims to motivate them to learn about the brain and to pursue neuroscience careers. Brain Bee tests knowledge of the human brain, including topics like intelligence, emotions, memory, sleep, vision, hearing, sensations, Alzheimer's disease, Parkinson's disease, stroke, schizophrenia, epilepsy, depression, addictions and brain research. | k-12, competition, international, education, career, brain, neuroscience, brain bee, training, intelligence, emotion, memory, sleep, vision, hearing, sensation, alzheimer's disease, parkinson's disease, stroke, schizophrenia, epilepsy, depression, addiction, neuroanatomy, neurohistology, microscope, brain imaging, neuroimaging, diagnosis, training material | For high school students | nlx_155566 | SCR_002248 | International Brain Bee | 2026-09-12 01:03:12 | 1 | ||||||||
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Beijing: Eyes Open Eyes Closed Study Resource Report Resource Website |
Beijing: Eyes Open Eyes Closed Study (RRID:SCR_001507) | Beijing EOEC | data or information resource, data set | Data set of 48 healthy controls from a community (student) sample from Beijing Normal University in China with 3 resting state fMRI scans each. During the first scan participants were instructed to rest with their eyes closed. The second and third resting state scan were randomized between resting with eyes open versus eyes closed. In addition this dataset contains a 64-direction DTI scan for every participant. The following data are released for every participant: * 6-minute resting state fMRI scan (R-fMRI) * MPRAGE anatomical scan, defaced to protect patient confidentiality * 64-direction diffusion tensor imaging scan (2mm isotropic) * Demographic information and information on the counterbalancing of eyes open versus eyes closed. | early adult human, resting state, fmri, diffusion tensor imaging, resting state fmri, eyes open, eyes closed, neuroimaging, mprage, image collection, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: 1000 Functional Connectomes Project |
Healthy | National Natural Science Foundation of China 30770594; National High Technology Program of China (863) 2008AA02Z405 |
Creative Commons Attribution-NonCommercial License | nlx_152810 | SCR_001507 | Beijing Eyes Open Eyes Closed Study, Beijing Normal University State Key Laboratory of Cognitive Neuroscience and Learning Eyes Open Eyes Closed Sample, Eyes Open Eyes Closed Sample, BNU Eyes Open Eyes Closed Sample | 2026-09-12 01:03:11 | 0 | |||||
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Automated recognition of brain region mentions in neuroscience literature. Resource Report Resource Website 1+ mentions |
Automated recognition of brain region mentions in neuroscience literature. (RRID:SCR_002731) | WhiteText | data or information resource, data set | Freely available corpus of manually annotated brain region mentions created to facilitate text mining of neuroscience literature. The corpus contains 1,377 abstracts with 18,242 brain region annotations. Interannotator agreement was evaluated for a subset of the documents, and was 90.7% and 96.7% for strict and lenient matching respectively. We observed a large vocabulary of over 6,000 unique brain region terms and 17,000 words. For automatic extraction of brain region mentions we evaluated simple dictionary methods and complex natural language processing techniques. The dictionary methods based on neuroanatomical lexicons recalled 36% of the mentions with 57% precision. The best performance was achieved using a conditional random field (CRF) with a rich feature set. Features were based on morphological, lexical, syntactic and contextual information. The CRF recalled 76% of mentions at 81% precision, by counting partial matches recall and precision increase to 86% and 92% respectively. We suspect a large amount of error is due to coordinating conjunctions, previously unseen words and brain regions of less commonly studied organisms. We found context windows, lemmatization and abbreviation expansion to be the most informative techniques. We encourage you to test new methods and applications of the dataset. Please contact us if you do, we would like to hear about and link to your work. The abstracts are from PubMed/Medline, specifically The Journal of Comparative Neurology. | brain region, annotation, journal of comparative neurology, neuroanatomy, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: PubMed is related to: MEDLINE has parent organization: University of British Columbia; British Columbia; Canada |
PMID:19750194 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24027 | http://www.nitrc.org/projects/whitetext/ | SCR_002731 | WhiteText - annotated neuroscience text | 2026-09-12 01:03:13 | 3 | |||||
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GSE4271 Resource Report Resource Website 50+ mentions |
GSE4271 (RRID:SCR_003643) | GSE4271 | data or information resource, data set | Curated data set from a study that investigated 77 primary high-grade astrocytomas and 23 matched recurrences so that changes in gene expression related to both survival and disease progression can be identified. Samples in the study include WHO grade III and IV astrocytomas with a wide range of survival times. | adult human, brain, gene expression |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Astrocytoma | Free, Public | nlx_157794 | SCR_003643 | 2026-09-12 01:03:14 | 62 | |||||||
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Neurophysiology Imaging Facility Resource Report Resource Website |
Neurophysiology Imaging Facility (RRID:SCR_004080) | NIF | access service resource, core facility, service resource | Neurophysiology imaging core facility that provides anatomical and functional MRI scanning for researchers in the National Institute of Mental Health (NIMH), the National Eye Institute (NEI), and the National Institute for Neurological Disorders and Stroke (NINDS). The shared intramural resource centers on a cutting-edge 4.7T vertical bore scanner dedicated to imaging of nonhuman primates. | mri, fmri, neuroimaging, neurophysiology, brain | has parent organization: National Institute of Mental Health | NIMH ; NINDS ; NEI |
nlx_158530 | SCR_004080 | Neurophysiology Imaging Facility (NIF) | 2026-09-12 01:03:14 | 0 | |||||||
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National Resource for Quantitative Functional MRI Resource Report Resource Website 1+ mentions |
National Resource for Quantitative Functional MRI (RRID:SCR_006716) | Resource for Quantitative Functional MRI | biomedical technology research center, training resource | Biomedical technology research center that provides expertise for the design of quantitative magnetic resonance imaging (MRI) and spectroscopy (MRS) data acquisition and processing technologies that facilitate the biomedical research of a large community of clinicians and neuroscientists in Maryland and throughout the USA. These methods allow noninvasive assessment of changes in brain anatomy as well as in tissue metabolite levels, physiology, and brain functioning while the brain is changing size during early development and during neurodegeneration, i.e. the changing brain throughout the life span. The Kirby Center has 3 Tesla and 7 Tesla state of the art scanners equipped with parallel imaging (8, 16, and 32-channel receive coils) and multi-transmit capabilities. CIS has an IBM supercomputer that is part of a national supercomputing infrastructure. Resources fall into the following categories: * MRI facilities, image acquisition, and processing * Computing facilities and image analysis * Novel statistical methods for functional brain imaging * Translating laboratory discoveries to patient treatment | quantitative magnetic resonance imaging, magnetic resonance spectroscopy, mri, fmri, function, metabolism, physiology, brain, neurodevelopment, neurodegeneration, image acquisition, image processing, computing, image analysis, statistical method, neuroimaging, development |
has parent organization: Kennedy Krieger Institute has parent organization: Johns Hopkins University; Maryland; USA |
NIBIB P41 EB015909; NCRR P41 RR015241 |
nlx_152634 | http://mri.kennedykrieger.org/nationalresource/index.html | SCR_006716 | Resource for Quantitative Functional Magnetic Resonance Imaging | 2026-09-12 01:03:16 | 1 | ||||||
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Integrated Nervous System Connectivity Resource Report Resource Website |
Integrated Nervous System Connectivity (RRID:SCR_006391) | NSC | data or information resource, data set | A data set of connectivity statements from BAMS, CoCoMac, BrainMaps, Connectome Wiki, the Hippocampal-Parahippocampal Table of Temporal-Lobe.com, and Avian Brain Circuitry Database. The data set lists which brain sites connectivity is to and from, the organism connectivity is mapped in, and journal references. | connectivity, nervous system, macaque, brain, bird, data set |
uses: Avian Brain Circuitry Database uses: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat uses: Connectome Wiki uses: BrainMaps.org uses: CoCoMac uses: Brain Architecture Management System uses: BlueBrain Bluima Connectivity is used by: NIF Data Federation has parent organization: Integrated |
Data are licensed by their respective owners, Use and distribution is subject to the terms of use by the original resource | nif-0000-07732 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8 https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-8, http://neuinfo.org/nif/nifgwt.html?query=nif-0000-07732, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nif-0000-07732-1 | SCR_006391 | NIF Integrated Nervous System Connectivity View, Neuroscience Information Framework Integrated Nervous System Connectivity, Integrated NSC View, Integrated NSC, NIF NSC, NIF Integrated NSC, Integrated Nervous System Connectivity View, Nervous System Connectivity | 2026-09-12 01:03:16 | 0 | ||||||
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DCBC toolbox Resource Report Resource Website |
DCBC toolbox (RRID:SCR_022176) | software resource, software toolkit | Software Python toolbox for brain parcellation evaluation. | brain parcellation evaluation, brain, parcellation evaluation, brain parcellation | Free, Available for download, Freely available | SCR_022176 | DCBC | 2026-09-12 01:03:00 | 0 | ||||||||||
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Resting State Hemodynamic Response Function Retrieval and Deconvolution Resource Report Resource Website 1+ mentions |
Resting State Hemodynamic Response Function Retrieval and Deconvolution (RRID:SCR_023663) | rsHRF | software resource, software toolkit | Software toolbox for resting state HRF estimation and deconvolution analysis. Matlab and Python toolbox that implements HRF estimation and deconvolution from resting state BOLD signal. Used to retrieve optimal lag between events and HRF onset, as well as HRF shape. Once that HRF has been retrieved for each voxel/vertex, it can be deconvolved from time series or one can map shape parameters everywhere in brain and use it as pathophysiological indicator. Input can be 2D GIfTI, 3D or 4D NIfTI images, but also on time series matrices/vectors. Output are three HRF shape parameters for each voxel/vertex, plus deconvolved time series, and number of retrieved pseudo events. All can be written back to GIfTI or NIfTI images. | hemodynamic response function, HRF estimation and deconvolution, resting state BOLD signal, GIfTI images, NIfTI images, brain | European Union Horizon 2020 Framework Programme ; Fund for Scientific Research-Flanders ; National Natural Science Foundation of China |
PMID:34560269 | Free, Available for download, Freely available | https://github.com/compneuro-da/rsHRF | SCR_023663 | 2026-09-12 01:03:05 | 4 | |||||||
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Mind Hacks Resource Report Resource Website |
Mind Hacks (RRID:SCR_000170) | Mind Hacks | blog, data or information resource, narrative resource | Mind Hacks: Neuroscience and psychology tricks to find out what's going on inside your brain. Mind Hacks is also a book by Tom Stafford and Matt Webb. | neuroscience, psychology, brain |
is used by: NIF Data Federation is used by: Integrated Blogs |
All blog posts by http://mindhacks.com/ are licensed under a Creative Commons Attribution-NonCommercial-ShareAlike v3 Unported License. | nlx_48997 | SCR_000170 | 2026-09-12 01:03:09 | 0 | ||||||||
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ADHD-200 Preprocessed Data Resource Report Resource Website 1+ mentions |
ADHD-200 Preprocessed Data (RRID:SCR_000576) | ADHD-200 Preprocessed Data | data or information resource, data set | Preprocessed versions of the ADHD-200 Global Competition data including both preprocessed versions of structural and functional datasets previously made available by the ADHD-200 consortium, as well as initial standard subject-level analyses. The ADHD-200 Sample is pleased to announce the unrestricted public release of 776 resting-state fMRI and anatomical datasets aggregated across 8 independent imaging sites, 491 of which were obtained from typically developing individuals and 285 in children and adolescents with ADHD (ages: 7-21 years old). Accompanying phenotypic information includes: diagnostic status, dimensional ADHD symptom measures, age, sex, intelligence quotient (IQ) and lifetime medication status. Preliminary quality control assessments (usable vs. questionable) based upon visual timeseries inspection are included for all resting state fMRI scans. In accordance with HIPAA guidelines and 1000 Functional Connectomes Project protocols, all datasets are anonymous, with no protected health information included. They hope this release will open collaborative possibilities and contributions from researchers not traditionally addressing brain data so for those whose specialties lay outside of MRI and fMRI data processing, the competition is now one step easier to join. The preprocessed data is being made freely available through efforts of The Neuro Bureau as well as the ADHD-200 consortium. They ask that you acknowledge both of these organizations in any publications (conference, journal, etc.) that make use of this data. None of the preprocessing would be possible without the freely available imaging analysis packages, so please also acknowledge the relevant packages and resources as well as any other specific release related acknowledgements. You must be logged into NITRC to download the ADHD-200 datasets, http://www.nitrc.org/projects/neurobureau | mri, fmri, brain, neuroimaging, attention deficit-hyperactivity disorder, anatomical, resting state, child, adolescent, human, young, early adult human, functional imaging, structural imaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Neuro Bureau has parent organization: Neuro Bureau has parent organization: ADHD-200 Sample |
Attention deficit-hyperactivity disorder | Free, Public, Account required, Acknowledgement requested | nlx_144425 | http://www.nitrc.org/ir/app/template/XDATScreen_report_xnat_projectData.vm/search_element/xnat:projectData/search_field/xnat:projectData.ID/search_value/adhd_200 | SCR_000576 | 2026-09-12 01:03:10 | 4 | ||||||
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Center for Functional Neuroimaging Technologies Resource Report Resource Website 1+ mentions |
Center for Functional Neuroimaging Technologies (RRID:SCR_001423) | CFNT | access service resource, biomedical technology research center, service resource, training resource | Biomedical technology research center that develops and applies innovative neuroimaging technologies and techniques to enable closer examination of the human brain, and thereby contribute to better understanding of the brain in health and disease. They develop new techniques and advance existing technologies for acquisition and analysis of functionally specific images of the working brain, with unprecedented physiological precision and spatiotemporal resolution. The research and development aims to improve and extend existing methods for non-invasive magnetic resonance image analysis and acquisition, electromagnetic source imaging, optical neuroimaging, and most recently, combined MR-PET neuroimaging. The Resource provides an essential interactive environment, within which an interdisciplinary team of highly skilled scientists, engineers, and clinicians with diverse expertise in multiple modalities and disciplines. The resource supports service use of the Center's facilities by neuroscientists throughout the country, provide extensive training opportunities for students, fellows, and staff scientists, and seek to advance the field of brain mapping through active dissemination of new knowledge and technology. | mri, neuroimaging, pet, acquisition, analysis, brain, electromagnetic source imaging, optical neuroimaging, multimodal, magnetic resonance, eeg, meg, electrocorticography, information resource, optical imaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard Medical School; Massachusetts; USA |
NIBIB 5P41EB015896-18 | Free, Available for download, Freely available | nlx_152644 | http://www.nitrc.org/projects/cfnt | SCR_001423 | 2026-09-12 01:03:11 | 1 | ||||||
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MRC London Neurodegenerative Diseases Brain Bank Resource Report Resource Website 10+ mentions |
MRC London Neurodegenerative Diseases Brain Bank (RRID:SCR_013839) | biomaterial supply resource, material resource | A biomaterial supply resource which provides high quality, clinically and neuropathologically well-characterised human brain and spinal cord tissue. The Brain Bank focuses on neurodegenerative diseases such as Alzheimer’s Disease (AD), Frontotemperal dementias (FTD) and Motor Neurone Disease (MND). However, it also contains tissues for the study of HIV, Autism and Schizophrenia, and movement disorders. | biomaterial supply resource, brain, brain tissue, brain bank, neurodegenerative disorder, neurodegenerative disease, spinal cord tissue |
is listed by: Multiple Sclerosis Discovery Forum is related to: Multiple Sclerosis Discovery Forum has parent organization: King's College London; London; United Kingdom |
Medical Research Council | Available to the research community | SCR_013839 | The Brain Bank | 2026-09-12 01:02:49 | 31 | ||||||||
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Human Brain Tissue Bank Resource Report Resource Website |
Human Brain Tissue Bank (RRID:SCR_013837) | HBTB | biomaterial supply resource, material resource | A biomaterial resource which stores and distributes dissected human brain samples and topographically oriented tissue blocks. Most brains were removed from the skull and frozen within 2-6 hours after death. The microdissection of 260 different brain nuclei is performed on frozen brains and the samples are kept in -70ºC. Materials must be studied in the course of an approved research project, which has scientific aims and is devoid of any commercial profit for the researches involved and for their respective institutions. | biomaterial supply resource, brain, brain sample, tissue repository |
is listed by: Multiple Sclerosis Discovery Forum is related to: BrainNet Europe is related to: Multiple Sclerosis Discovery Forum |
Free, Available for the research community, The community can contribute to this resource | SCR_013837 | Budapest Human Brain Tissue Bank, Human Brain Tissue Bank Budapest | 2026-09-12 01:02:49 | 0 | ||||||||
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Loyola University Medical Center / Hines VA Brain Bank Resource Report Resource Website |
Loyola University Medical Center / Hines VA Brain Bank (RRID:SCR_013277) | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 31, 2016. A medical center with a neuropathology research program focused on the normal and abnormal aging process of the central nervous system and a funding source for research. The center serves as a collection site for brains in order to study normal aging and neurodegenerative diseases like Alzheimer's. | late adult human, neuropathology, autopsy, alzheimer's disease, neurodegenerative disease, age-matched control, normal control, muscle, nerve, brain, brain tissue, tissue, neuropathology |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Loyola University Chicago Stritch School of Medicine; Illinois; USA |
Alzheimer's disease, Neurodegenerative disease, Age-matched control, Aging | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144052 | http://www.stritch.luc.edu/depts/path/residency/anatomic_pathology.htm#Neuropathology | SCR_013277 | Loyola University / Hines Brain Bank, Loyola University Medical Center/Hines VA Brain Bank, Loyola University Brain Bank | 2026-09-12 01:02:48 | 0 | ||||||
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exact Low Resolution Electromagnetic Tomography Resource Report Resource Website 100+ mentions |
exact Low Resolution Electromagnetic Tomography (RRID:SCR_013830) | eLORETA | software application, software resource | Software application which computes cortical three-dimensional distribution of current density of the brain based on the scalp-recorded electric potential distribution. The exact low resolution brain electromagnetic tomography method has the property of exact localization to test point sources, yielding images of current density with exact localization, albeit with low spatial resolution. eLORETA has no localization bias even in the presence of structured noise. Deep structures, such as the anterior cingulate cortex and mesial temporal lobes, can be correctly localized with these methods. | LORETA, EEG, MEG, brain, image, electromagnetic tomography |
is related to: Low Resolution Electromagnetic Tomography is related to: sLORETA is related to: sLORETA has parent organization: University of Zurich; Zurich; Switzerland |
Free, Not ready for public distribution, Must have administrator rights | http://www.uzh.ch/keyinst/loretaOldy.htm | SCR_013830 | Exact Low Resolution Brain Electromagnetic Tomography | 2026-09-12 01:02:49 | 279 | |||||||
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Hierarchical Region Splitting Resource Report Resource Website 1+ mentions |
Hierarchical Region Splitting (RRID:SCR_016398) | HRS | algorithm resource, software resource | Algorithm for computational imaging of MRI data that detects and quantifies ischemic core–penumbra using only a single MRI modality (T2- or diffusion-weighted imaging, T2WI/DWI). It can be used with 3D data on lesions and normal-appearing brain matter (NABM) volumes. | mri, neuroimaging, modality, t2, diffusion, 3d, brain, lesion, nabm, core, penumbra, computation, hypoxia, ischemic | PMID:22929436 | Freely available | SCR_016398 | Hierarchical Region Splitting (HRS) | 2026-09-12 01:02:54 | 1 | ||||||||
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elmr Resource Report Resource Website |
elmr (RRID:SCR_017249) | software resource, software toolkit | Software tool as support for working with light and electron microscopy fly brain data. Part of suite of R packages based on NeuroAnatomy Toolbox. Provides tools to move between adult brain EM and light level data, emphasising interaction between CATMAID web application and R Neuroanatomy Toolbox package. | support, working, light, electron, microscopy, fly, brain, data | is related to: NeuroAnatomy Toolbox | Free, Available for download, Freely available | https://jefferis.github.io/elmr/ | SCR_017249 | 2026-09-12 01:02:54 | 0 | |||||||||
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Neurolucida Explorer Resource Report Resource Website 100+ mentions |
Neurolucida Explorer (RRID:SCR_017348) | data analytics software, software application, software resource | Companion analytical software for Neurolucida and Neurolucida 360, designed to perform extensive morphometric analysis on neuron reconstructions, serial section reconstructions, and brain maps. | Morphometric, analysis, neuron, reconstruction, section, brain, map, mbfbioscience, MBF Bioscience | SCR_017348 | 2026-09-12 01:02:54 | 116 | ||||||||||||
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BVA import/export EEGLAB plugin Resource Report Resource Website 1+ mentions |
BVA import/export EEGLAB plugin (RRID:SCR_016333) | bva-io | software application, software resource, software toolkit | Software package for interfacing the Brain Vision Analyser data files (load/save) for ongoing development of Matlab routines . This package is also compatible with the EEGLAB software, and may be uncompressed in the plugin folder of this software. | interfacing, brain, vision, analyser, data, file, load, save, Matlab, routine, compatible, EEGLAB |
is related to: SourceForge is related to: EEGLAB is related to: MATLAB |
Free, Available for download, Freely available | SCR_016333 | Brain Vision Analyser | 2026-09-12 01:02:53 | 4 |
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