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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Colorado Assessment Tests - Tower of London Resource Report Resource Website |
Colorado Assessment Tests - Tower of London (RRID:SCR_003507) | CAT Tower of London | assessment test provider, material resource | CATs Tower of London test is a free, computer-based software test originally developed by Shallice (1982) to investigate problem solving in subjects with damage to the frontal lobes. The CATs Tower of London Test comes with one preprogrammed test along with extensive normative data for that test. You can also create a test using your design. Briefly, subjects are required to move colored beads from a window on the left (working area) until they achieve the arrangement in the window on the right (goal position). Subjects are instructed to try to achieve the goal arrangement in as few moves as possible. The software contains a Tower of London test. The test contains trials with 3 beads and 3 pegs, 4 beads and 4 pegs, and 5 beads and 5 pegs. You can use the Setup screen to create a test using your design. A test can contain 3, 4, and 5 bead problems with varying number of moves required for the optimal solution. In Shallice's initial investigation using the Tower of London, patients with damage to the left anterior frontal lobe demonstrated impaired planning (i.e., greater number of moves required for solution). Patients with damage to the right anterior, and left or right posterior areas of the frontal lobes were not impaired. Thus, results from this initial study provided support for the view that the left anterior frontal lobe area is involved in the planning required for solving the Tower of London test. Recent studies using neuroimaging techniques support this notion. Studies using regional cerebral blood flow (rCBF) imaging indicate an involvement of the left frontal lobes in the planning required for successfully completing the Tower of London puzzle. Studies of patients with damage to the frontal lobes indicate less cortical specificity, but are consistent with the view that the frontal lobes are involved in the planning required for solving this puzzle. | frontal lobe, assessment, brain, human, left anterior frontal lobe, left frontal lobe, left mesial frontal lobe, problem solving | has parent organization: University of Colorado; Colorado Springs; USA | nif-0000-00208 | http://www.catstests.com/Product03.htm | SCR_003507 | Tower of London | 2026-09-12 01:02:30 | 0 | |||||||
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Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders Resource Report Resource Website 1+ mentions |
Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders (RRID:SCR_003282) | Pleiades Promoter Project | biomaterial supply resource, material resource | Project to generate human DNA promoters of less than 4 kb (MiniPromoters) to drive gene expression in defined brain regions of therapeutic interest for diseases such as Alzheimer, Parkinson, Huntington, Amyotrophic Lateral Sclerosis, Multiple Sclerosis, Spinocerebellar Ataxia, Depression, Autism, and Cancer. Project develops and shares tools like human MiniPromoters that drive region- and cell-specific gene expression in the mouse brain, expression constructs, mouse embryonic stem cell lines, and knock-in mice all of which carry brain-specific MiniPromoters. Project is daughter of Genome Canada Project, Atlas of Gene Expression in Mouse Development, within which mouse brain gene expression data have already been gathered. Project team has collaborated with International BioPharma Solutions Ltd., management and communications consulting company specializing in product development and commercialization advice. Project will explore challenging interface between science and journalism with focus on genomics and gene therapy. | Human, DNA, promoter, gene, expression, brain, disorder, therapy |
is listed by: One Mind Biospecimen Bank Listing is related to: CanEuCre is related to: JAX Cre Repository is related to: Recombinase (cre) Activity has parent organization: University of British Columbia; British Columbia; Canada |
Alzheimer, Parkinson, Huntington, Amyotrophic Lateral Sclerosis, Multiple Sclerosis, Spinocerebellar Ataxia, Depression, Autism, Cancer | Child and Family Research Institute ; Genome British Columbia ; Genome Canada ; UBC Institute of Mental Health |
Free, Freely available | nif-0000-01868 | https://plone.bcgsc.ca/project/pleiades-promoter-project | http://www.pleiades.org/ | SCR_003282 | 2026-09-12 01:02:29 | 4 | ||||
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Brown University Rhode Island Biobank Core Facility Resource Report Resource Website |
Brown University Rhode Island Biobank Core Facility (RRID:SCR_004289) | RIBB | biomaterial supply resource, material resource | Cryogenic facility for human tissue and fluid samples under management of Brown University Division of Biology and Medicine and supports biomedical research on Brown campus and across affiliated hospitals of Warren Alpert Medical School. | Cryogenic, facility, human, tissue, fluid, sample, brain, cerebral, spinal, fluid, blood, neuromuscular, urine, saliva, tumor, sample, skeletal muscle, ABRF |
is listed by: One Mind Biospecimen Bank Listing is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Brown University; Rhode Island; USA |
Alzheimer's disease | Restricted | nlx_30512, ABRF_167 | SCR_004289 | Rhode Island Biobank, RI BioBank, Brown University Rhode Island Biobank Cryogenic Core Facility | 2026-09-12 01:02:32 | 0 | ||||||
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Banyan Biomarkers Resource Report Resource Website 1+ mentions |
Banyan Biomarkers (RRID:SCR_004515) | Banyan Biomarkers | assessment test provider, material resource | Banyan Biomarkers was founded in 2002 by Ron Hayes, PhD , Kevin Wang, PhD, and Nancy Denslow, PhD to create the first Point of Care (POC) Blood Test to diagnose traumatic brain injury (TBI) and to diagnose neurological diseases. Initially inspired by research conducted at the University of Florida and The Evelyn F. and William McKnight Brain Institute, Banyan Biomarkers has made significant progress in developing and clinically validating novel enzyme linked immunosorbent assays (ELISAs) for traumatic brain injury (TBI). Banyan scientists have created an extensive pipeline of potential biomarkers and the company has a robust intellectual property portfolio. Jackson Streeter, Banyan''s CEO, has extensive experience in development of medical devices for acute brain injury. Currently no blood test exists for use by physicians to detect the presence and severity of brain trauma. Banyan Biomarkers'' research has identified unique and proprietary biomarkers present in the patient''s blood following injury to the brain. The detection and quantification of these biomarkers may provide early indications of brain trauma essential for earlier intervention and management. Banyan Biomarkers, Inc. offers preclinical and clinical sample analyses with a proven panel of neurological, psychiatric, neurodegenerative disease, and organ toxicity biomarker assays. The company provides analytical services to a wide range of customers including pharmaceutical companies, biotechnology companies and investigators at academic research institutes. | traumatic brain injury, blood test, human, brain, stroke, liver injury, biomarker, immunoassay, neurodegenerative disease, neurological disorder, mental disease, neuroinflammation, microglial activation, apoptosis, necrosis, hepatoxicity, in vitro, diagnostic test, enzyme linked immunosorbent assay, one mind tbi | nlx_143797 | SCR_004515 | 2026-09-12 01:02:33 | 1 | ||||||||||
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Neurology Image Library from The Internet Stroke Center Resource Report Resource Website 1+ mentions |
Neurology Image Library from The Internet Stroke Center (RRID:SCR_013633) | data or information resource, database | The Internet Stroke Center at Washington University is pleased to offer this module for viewing CT, MR, and angiogram images of cerebrovascular and neurological diseases. While this project is still being perfected -- and many more cases have yet to be added -- we hope that you will find this collection useful in your education and practice. The images presented here are for educational use only. This information may not be used for diagnosis or treatment. All images are protected property of the Internet Stroke Center at Washington University and may not be reproduced without permission. Permission may be granted to students and professionals to borrow images from this site for educational purposes and/or presentations; we just ask that an email be sent detailing both the desired material and the intended use. Please direct all comments, questions, and requests to the Site Editor of the Internet Stroke Center. | human, stroke, homo sapien, brain, image, clinical data, translational medicine | has parent organization: Washington University in St. Louis; Missouri; USA | nif-0000-00535 | http://www.strokecenter.org/images | SCR_013633 | Neurology Image Library | 2026-09-12 01:02:13 | 1 | ||||||||
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Brain Transcriptome Database Resource Report Resource Website 1+ mentions |
Brain Transcriptome Database (RRID:SCR_014457) | data or information resource, database | A platform that allow users to visualize and analyze transcriptome data related to the genetics that underlie the development, function, and dysfunction stages and states of the brain. Users can search for cerebellar development genes by name, ID, keyword, expression, and tissue specificity. Search results include general information, links, temporal, spatial, and tissue information, and gene category. | transcriptome, brain, database, temporal, spatial, tissue, brain development, brain function, brain dysfunction, genetics | NIJC Japan Node of the INCF ; JST ; JSPS ; MEXT |
PMID:18603407 | Public, Available to the scientific community | r3d100011591 | SCR_014457 | Cerebellar Development Transcriptome Database CDT-DB, BrainTX | 2026-09-12 01:02:14 | 1 | |||||||
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Brain RNA-Seq Resource Report Resource Website 100+ mentions |
Brain RNA-Seq (RRID:SCR_013736) | data or information resource, database | Database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of cerebral cortex. Collection of RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of mouse cerebral cortex. RNA-Seq of cell types isolated from mouse and human brain. | RNAseq, transcriptome, splicing, data, glia, neuron vascular, cell, cerebral, cortex, mouse, human, brain, FASEB list | has parent organization: Stanford University; Stanford; California | NIGMS T32GM007365; NIMH R01MH09955501; NINDS R01NS08170301 |
PMID:25186741 PMID:26687838 |
Free, Freely available | SCR_017483 | http://www.brainrnaseq.org/ | SCR_013736 | Barres Brain RNA-Seq | 2026-09-12 01:02:13 | 156 | |||||
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90 fROI atlas Resource Report Resource Website 10+ mentions |
90 fROI atlas (RRID:SCR_014757) | atlas, data or information resource | Atlas of functional ROI's, including individual networks (auditory network, sensorimotor network, etc.). Atlases of individual networks and combined networks are available for download directly from the website. | froi, roi, dmn, atlas, individual network, brain, brain region, brain network | is related to: 499 fROI atlas | PMID:21616982 | Available for download | SCR_014757 | 2026-09-12 01:02:15 | 30 | |||||||||
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Bravissima Resource Report Resource Website |
Bravissima (RRID:SCR_016229) | atlas, data or information resource | Project that is a translation of the BraVa arterial vasculature database into the NIFTI MRI file format that can be applied to stroke studies, fMRI resting state imaging studies and other clinical neuroscience studies. Group artery region labels and arterial density maps are provided as well. Human Brain Major Artery Atlas 10.7490/f1000research.1114378.1 | brain, neuroanatomy, artery, vascular, vasculature, |
is related to: BraVa is related to: DALAN Atlas has parent organization: U.S. Department of Veterans Affairs |
Free, Available for download | SCR_016229 | Bravissima: Human Brain Artery NIfTI Atlas, Human Brain Major Artery Atlas | 2026-09-12 01:02:16 | 0 | |||||||||
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Waxholm Space Atlas of the Sprague Dawley Rat Brain Resource Report Resource Website 10+ mentions |
Waxholm Space Atlas of the Sprague Dawley Rat Brain (RRID:SCR_017124) | WHS-SD-atlas | atlas, data or information resource, waxholm atlas | Open access volumetric atlas of anatomical delineations of rat brain based on structural contrast in isotropic magnetic resonance and diffusion tensor images acquired ex vivo from 80 day old male Sprague Dawley rat at Duke Center for In Vivo Microscopy. Spatial reference is provided by Waxholm Space coordinate system. Location of bregma and lambda are identified as anchors towards stereotaxic space. Application areas include localization of signal in non structural images. Atlas, MRI and DTI volumes, and diffusion tensor data are shared in NIfTI format. | volumetric, atlas, anatomical, delineation, rat, brain, structural, contrast, isotropic, MIR, DTI, male, Sprague Dawley, image |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ITK-SNAP is related to: PMOD Software is related to: Duke University; North Carolina; USA has parent organization: University of Oslo; Oslo; Norway works with: MeshView works with: VisuAlign |
EC Human Brain Project ; NCI U24 CA092656; NIBIB P41 EB015897; Research Council of Norway |
PMID:24726336 PMID:25585022 |
Free, Available for download, Freely available | SCR_017124 | WHS SD rat atlas, WHS_SD_rat_atlas, WHS-SD-rat-atlas | 2026-09-12 01:02:17 | 38 | ||||||
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CATlas Resource Report Resource Website 1+ mentions |
CATlas (RRID:SCR_018690) | atlas, data or information resource | Atlas of gene regulatory elements in adult mouse cerebrum. Atlas of CIS elements, providing information on accessible chromatin in individual cells from regions of adult mouse isocortex, olfactory bulb, hippocampus and cerebral nuclei. Uses resulting data to define candidate cis-regulatory DNA elements in distinct cell groups. Many are linked to putative target genes expressed in diverse cerebral cell types and uncover transcriptional regulators involved in broad spectrum of molecular and cellular pathways in different neuronal and glial cell populations. Used for analysis of gene regulatory programs of mammalian brain and interpretation of non-coding risk variants associated with various neurological disease and traits in humans. | Gene, regulatory element, gene regulatory element, adult mouse, cerebrum, Cis-element, chromatin, mouse isocortex, olfactory bulb, hippocampus, cerebral nuclei, cis regulatory DNA element, brain, neurological disease |
is used by: BICCN is related to: BRAIN Initiative Cell Atlas Network |
DOI:10.1101/2020.05.10.087585 | Free, Freely available | SCR_018690 | , Cis-element Atlas, Ren lab web portal for chromatin accessibility data | 2026-09-12 01:02:19 | 4 | ||||||||
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ABA Mouse Brain: Atlas Resource Report Resource Website 100+ mentions |
ABA Mouse Brain: Atlas (RRID:SCR_017479) | data or information resource, database, service resource | Genome wide database of gene expression in mouse brain. Genome-wide atlas of gene expression in the adult mouse brain. | Genome, data, gene, expression, mouse, brain |
has parent organization: Allen Institute for Brain Science is provided by: Allen Brain Atlas |
PMID:17151600 | Free, Freely available | SCR_017479 | Allen Brain Atlas: Mouse Brain, , Allen Brain Atlas Mouse Brain: Atlas | 2026-09-12 01:02:18 | 405 | ||||||||
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MIITRA atlas Resource Report Resource Website 1+ mentions |
MIITRA atlas (RRID:SCR_017566) | atlas, data or information resource | Atlas for studies of older adult brain. Includes T1-weighted template of older adult brain and tissue probability maps. Exhibits high image sharpness, provides higher inter-subject spatial normalization accuracy compared to other standardized templates and similar normalization accuracy to well-constructed study-specific templates. | Older, adult, brain, tissue, probability, map, standardized, template | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | NIA R01 AG052200 | Free, Available for download, Freely available | https://www.nitrc.org/frs/?group_id=1407&release_id=4156 | SCR_017566 | Multichannel Illinois Institute of Technology and Rush University Aging atlas | 2026-09-12 01:02:18 | 4 | |||||||
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Brain.io Resource Report Resource Website |
Brain.io (RRID:SCR_014527) | data or information resource, portal, project portal | A startup research, development and innovation company based in The Grand Duchy of Luxembourg working on four major areas: Open Research, as Information Hub; Information Technology, as The Common Brain; Collective Awareness, as Manifesto; and Biophysics, as Human Extensibility. The Information Hub researches a methodology to conduct open research using a collaborative approach designed for multi-disciplinary interventions, multi-scope goal alignment, advanced analytics and a unified research experience for international cooperation. The Common Brain researches an open source intelligent architecture for future internet, one that is deeply sustainable over a highly distributed hybrid network, self-governed, heterogenous, and logical. Manifesto researches a methodology for a collaborative approach for policy making, open standardization, accreditation, verification and compliance. Human Extensibility researches the establishment of the scientific ground for a field of science concerned with the study of the physics and physiology of the human being, to provide techniques and genetic algorithms for human extensibility. | brain, startup, research, information hub, common brain, manifesto, human extensibility, open research, information technology, collective awareness, biophysics | SCR_014527 | Brain.io The Path to Paradigm Shift | 2026-09-12 01:01:02 | 0 | |||||||||||
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BROCCOLI Resource Report Resource Website 10+ mentions |
BROCCOLI (RRID:SCR_014093) | data processing software, image analysis software, software application, software resource | A software package written in OpenCL (Open Computing Language) that can be used for parallel analysis of fMRI data on a large variety of hardware configurations. If BROCCOLI is running on a GPU, it can perform non-linear spatial normalization to a 1 mm brain template in 4-6 s and run a second level permutation test with 10,000 permutations. | software package, parallel analysis, fmri, non linear spatial normalization, brain | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free | https://github.com/wanderine/BROCCOLI/ | SCR_014093 | 2026-09-12 01:01:02 | 22 | |||||||||
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BIDS Validator Resource Report Resource Website 10+ mentions |
BIDS Validator (RRID:SCR_017255) | data processing software, software application, software resource | Software validation tool that checks submitted folder structure for compliance to BIDS data standard. Validates Brain Imaging Data Structure. | BIDS, NeuroImaging, Neuroscience, check, folder, structure, compliance, data, standard, brain, imaging | is listed by: OMICtools | Laura and John Arnold Foundation ; NIBIB R01 EB020740 |
PMID:28278228 | Free, Available for download, Freely available | http://bids-standard.github.io/bids-validator/ | SCR_017255 | Brain Imaging Data Structure (BIDS) Validator | 2026-09-12 01:01:05 | 26 | ||||||
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brainlife.io Resource Report Resource Website 1+ mentions |
brainlife.io (RRID:SCR_016513) | data or information resource, portal | Platform for publishing reproducible code and datasets and providing access to national supercomputers, private clouds, and institutional high-performance computer systems to promote open software and data sharing to advance understanding of the human brain. | human, brain, life, data, application, technology, share, open, software, reproducible, code, dataset, |
has parent organization: Indiana University Bloomington; Indiana; USA works with: brainlife |
NSF BCS 1734853; NSF IIS 1636893 |
DOI:10.1038/s41597-019-0073-y | Public, Free, Freely available, Login required | https://github.com/brain-life | SCR_016513 | 2026-09-12 01:01:04 | 1 | |||||||
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BraTS Resource Report Resource Website 1+ mentions |
BraTS (RRID:SCR_016214) | data or information resource, organization portal, portal | Organization that provides a conference about the methods for the segmentation of brain tumors in magnetic resonance imaging (MRI) scans. Its conferences utilize multi-institutional pre-operative MRI scans and focus on the segmentation of intrinsically heterogeneous (in appearance, shape, and histology) brain tumors, namely gliomas. | brain, neuroscience, tumor, cancer, segmentation, mri, neuroimaging, glioma, patient, conference, event | SCR_016214 | BraTS: Multimodal Brain Tumor Segmentation, Multimodal Brain Tumor Segmentation | 2026-09-12 01:01:04 | 8 | |||||||||||
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Mouse Connectome Project Resource Report Resource Website |
Mouse Connectome Project (RRID:SCR_017313) | MCP | data or information resource, portal, project portal | Project to create complete mesoscale connectivity atlas of the C57Black/6 mouse brain and to subsequently generate its global neural networks. | mesoscale, connectivity, atlas, C57Black/6, mouse, brain, neural, network |
is used by: BICCN has parent organization: University of Southern California; Los Angeles; USA |
NIH | Free, Freely available | SCR_017313 | The Mouse Connectome Project, Mouse Connectome Project | 2026-09-12 01:01:05 | 0 | |||||||
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Compilation of Genetics Resource Databases Resource Report Resource Website 50+ mentions |
Compilation of Genetics Resource Databases (RRID:SCR_017501) | data or information resource, portal | Portal provides list of genetic resources such as Brain Atlases and genomes for various species provided by National Institute of Drug Abuse. | Genetic, data, brain, atlas, information, National, Institute, Drug, Abuse, FASEB list | Restricted | SCR_017501 | 2026-09-12 01:01:06 | 61 |
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