Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

26,911 Results - per page

Show More Columns | Download Top 1000 Results

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
PHYCAA+: adaptive physiological noise correction for BOLD fMRI
 
Resource Report
Resource Website
1+ mentions
PHYCAA+: adaptive physiological noise correction for BOLD fMRI (RRID:SCR_002514) PHYCAA+ software application, image processing software, data processing software, software resource Software algorithm that automatically estimates and removes physiological noise in BOLD fMRI data, including the effects of heartbeat and respiration. This algorithm (1) masks out high-variance CSF and vascular tracts that may otherwise confound analyses, and (2) regresses out noise timeseries in grey matter tissue, using an adaptive multivariate component decomposition (Canonical Autocorrelations Analysis). PHYCAA+ is an efficient, automated procedure that does NOT require external measures of physiology, nor does it require the user to manually identify noise components. Based on the peer-reviewed article: Churchill & Strother (2013). PHYCAA+: An Optimized, Adaptive Procedure for Measuring and Controlling Physiological Noise in BOLD fMRI. NeuroImage 82: 306-325 algorithm, matlab, magnetic resonance, nifti, os independent, fmri, bold, bold fmri, multivariate, physiological noise is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Toronto; Ontario; Canada
PMID:23727534 GNU Lesser General Public License nlx_155913 SCR_002514 2026-08-20 09:25:46 7
JCB DataViewer
 
Resource Report
Resource Website
10+ mentions
JCB DataViewer (RRID:SCR_002633) JCB DataViewer storage service resource, service resource, image repository, data or information resource, data repository, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A web-based, multi-dimensional image data-viewing application for original microscopy image datasets associated with articles published in The Journal of Cell Biology, a peer-reviewed journal published by The Rockefeller University Press. The JCB DataViewer can host multidimensional fluorescence microscopy images, 3D tomogram data, very large (gigapixel) images, and high content imaging screens. Images are presented in an interactive viewer, and the scores from high content screens are presented in interactive graphs with data points linked to the relevant images. The JCB DataViewer uses the Bio-Formats library to read over 120 different imaging file formats and convert them to the OME-TIFF image data standard. Image data are archived by the Journal and may be freely accessed by readers using the JCB DataViewer. Download of author-provided image data and associated metadata in OME-TIFF format is also possible with author permission, allowing for independent analysis of image data irrespective of acquisition or viewing software. Although the JCB DataViewer is designed to host and facilitate sharing and analysis of original microscopy image data, authors may also upload other types of original image data as supplements to their manuscripts, including histology and electron micrographs and digital scans of gels or blots. microscopy, standardization, data sharing, archiving, data management, metadata standard, visualization, analysis, image collection, histology, electron micrograph, digital scan, gel, blot is listed by: FORCE11
is listed by: SoftCite
is related to: OME-TIFF Format
has parent organization: Rockefeller University; New York; USA
Glencoe Software ;
OME - Open Microscopy Environment
PMID:22869591 THIS RESOURCE IS NO LONGER IN SERVICE nlx_156057, r3d100010895 https://doi.org/10.17616/R3PW4G SCR_002633 2026-08-20 09:25:49 14
pIRS
 
Resource Report
Resource Website
50+ mentions
pIRS (RRID:SCR_002519) software application, simulation software, software resource Software for de novo data simulation. It uses empirical distribution to reproduce Illumina pair-end reads with real distribution of substitution sequencing errors, quality values and GC%-depth bias. de novo data simulation, empirical distribution, illumina pair-end read, substitution sequencing error, gc depth bias is listed by: OMICtools PMID:22508794 Free, Available for download, Freely available OMICS_00254 SCR_002519 pIRS (profile based Illumina pair-end Reads Simulator), profile based Illumina pair-end Reads Simulator 2026-08-20 09:25:46 74
Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)
 
Resource Report
Resource Website
10+ mentions
Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) (RRID:SCR_002517) PDBP biospecimen repository, storage service resource, material storage repository, service resource Common data management resource and web portal to promote discovery of Parkinson's Disease diagnostic and progression biomarker candidates for early detection and measurement of disease progression. PDBP will serve as multi-faceted platform for integrating existing biomarker efforts, standardizing data collection and management across these efforts, accelerating discovery of new biomarkers, and fostering and expanding collaborative opportunities for all stakeholders. parkinson's, clinical neuroinformatics, magnetic resonance, diagnostic, progression, biomarker, clinical is recommended by: National Library of Medicine
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: NINDS Repository
is related to: MIPAV: Medical Image Processing and Visualization
has parent organization: National Institute of Neurological Disorders and Stroke
Parkinson's disease nlm ;
NINDS
PMID:25976927 Restricted nlx_155919 http://www.nitrc.org/projects/pdbp http://pdbp.ninds.nih.gov/index.jsp SCR_002517 Parkinson's Disease Biomarkers Program, PDBP: Parkinsons Disease Biomarkers Program, Parkinson’s Disease Biomarkers Program Data Management Resource, PDBP DMR 2026-08-20 09:25:49 31
GUDMAP Ontology
 
Resource Report
Resource Website
1+ mentions
GUDMAP Ontology (RRID:SCR_002637) GUDMAP Ontology resource, controlled vocabulary, ontology, data or information resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A high-resolution ontology has been developed by members of the GUDMAP consortium to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The GUDMAP ontology encompasses Theiler stage (TS) 17-27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterized structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. murine, genitourinary tract, development, in situ hybridization, theiler stage, adult mouse, newborn mouse, adolescent mouse, embryonic mouse is used by: GATACA GUDMAP Gene Explorer
is used by: Kidney Development Database
lists: GOA
lists: EuReGene
lists: Embryo Images Normal and Abnormal Mammalian Development
lists: Stem Cell Genome Anatomy Projects
lists: Eurexpress
lists: Gene Expression Database
lists: ToppGene Suite
is related to: eMouseAtlas
is related to: GenePaint Interactive Anatomy Atlas
is related to: EMAGE Gene Expression Database
is related to: Gene Expression Omnibus
has parent organization: GenitoUrinary Development Molecular Anatomy Project
NIDDK DK070136-02;
NIDDK DK070181;
NIDDK DK07020001;
European Union FP6 005085
PMID:17452023 THIS RESOURCE IS NO LONGER IN SERVICE nlx_156063 SCR_002637 2026-08-20 09:25:53 2
NCBI Genome
 
Resource Report
Resource Website
500+ mentions
NCBI Genome (RRID:SCR_002474) Genome storage service resource, service resource, data or information resource, data repository, database Database that organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations in six major organism groups: Archaea, Bacteria, Eukaryotes, Viruses, Viroids, and Plasmids. Genomes of over 1,200 organisms can be found in this database, representing both completely sequenced organisms and those for which sequencing is in progress. Users can browse by organism, and view genome maps and protein clusters. Links to other prokaryotic and archaeal genome projects, as well as BLAST tools and access to the rest of the NCBI online resources are available. chromosome, organelle, plasmid, viroid, virus, genome, sequence, map, assembly, annotation, gene mapping, dna, blast, protein cluster, gold standard is listed by: re3data.org
is related to: MapViewer
is related to: UniProt Proteomes
is related to: CaspBase
has parent organization: NCBI
works with: nTrackAnnotator
Free, Freely avaialble nif-0000-02802, r3d100010785 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Genome, https://doi.org/10.17616/R3R89S SCR_002474 Entrez Genomes, Entrez Genome, NCBI, Genome, Genome Database, Genome: Information by genome sequence 2026-08-20 09:25:48 618
Subject Library
 
Resource Report
Resource Website
Subject Library (RRID:SCR_002595) Subject Library software application, image processing software, data processing software, data management software, software toolkit, software library, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A collection of software tools used for processing and organizing MRI data. The Dicom Importer allows you to to view, assemble, and organize dicom files. Subject Library is a filesystem-based search and reporting tool that can be configured to work with many different organization schemes. This package also contains a python library that can be used to write scripts for custom tasks. reusable library, analyze, database application, magnetic resonance, os independent, python, workflow, mri, organize, process, neuroimaging is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of California at Davis; California; USA
THIS RESOURCE IS NO LONGER IN SERVICE nlx_155999 http://www.nitrc.org/projects/subjectlibrary SCR_002595 2026-08-20 09:25:48 0
Mason
 
Resource Report
Resource Website
100+ mentions
Mason (RRID:SCR_002476) software application, simulation software, software resource Collection of software tools for simulating biological sequences, including simulations of genome fragment sampling, random genomic sequences, methylation levels, and NGS reads. read simulating software, sequencing simulation, haplotype simulation is listed by: OMICtools Free, Available for download, Freely available OMICS_00252 SCR_002476 Mason2 2026-08-20 09:25:53 169
TAPIR
 
Resource Report
Resource Website
50+ mentions
TAPIR (RRID:SCR_002596) TAPIR software application, data processing software, software resource, image analysis software, registration software A set of command line tools allowing 2D and 3D image registration, mainly for medical imaging (although also relevant to other image registration problems). magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free nlx_156001 SCR_002596 Tools for Advanced Parameterized Image Registration 2026-08-20 09:25:57 67
iBEAT
 
Resource Report
Resource Website
10+ mentions
iBEAT (RRID:SCR_002470) iBEAT image processing software, software application, data processing software, software toolkit, image analysis software, software resource A toolbox with graphical user interfaces for processing infant brain MR images. Longitudinal (or single-time-point) multimodality (including T1, T2, and FA) (or single-modality) data can be processed using the toolbox. Main functions of the software (step by step) include image preprocessing, brain extraction, tissue segmentation and brain labeling. Linux operating system (64 bit) is required. A workstation or server with memory >8G is recommended for processing many images simutaneously. The graphical user interfaces and overall framework of the software are implemented in MATLAB. The image processing functions are implemented with the combination of C/C++, MATLAB, Perl and Shell languages. Parallelization technologies are used in the software to speed up image processing. atlas application, atlas data, data resource, image display, information resource, magnetic resonance, registration, segmentation, spatial transformation, visualization, warping, mri, infant, brain is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA
PMID:23055044 THIS RESOURCE IS NO LONGER IN SERVICE nlx_155851 http://www.nitrc.org/projects/ibeat SCR_002470 Infant Brain Extraction and Analysis Toolbox, LIBRA, iBEAT: Infant Brain Extraction and Analysis Toolbox 2026-08-20 09:25:52 39
Segmentation Validation Engine
 
Resource Report
Resource Website
Segmentation Validation Engine (RRID:SCR_002591) SVE software application, production service resource, service resource, data analysis service, analysis service resource, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. An automated online framework for performing validation studies of skull-stripping methods. Registered users may download 40 T1 MRI volumes, skull-strip them with the algorithm of their choice, and upload their segmentation results to the SVE website. The server will then compare the 40 skull-stripped results against a set of manually generated brain masks. The server computes a series of measures for the uploaded data, including Jaccard and Dice measures. It also produces images for visualizing the spatial location of the segmentation errors relative to a common space. The results are archived on the server, and the measures are viewable by visitors to the site. analyze, dice coefficient, information resource, loni/sve terms of use, magnetic resonance, nifti, os independent, other/proprietary license, overlap metrics, quality metrics, quantification, segmentation, tanomoto coefficient, web environment, web resource, web service, mri is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of California at Los Angeles; California; USA
PMID:19073267 THIS RESOURCE IS NO LONGER IN SERVICE nlx_155995 http://www.nitrc.org/projects/sve SCR_002591 2026-08-20 09:25:52 0
Primate Cortical Connectivity Database
 
Resource Report
Resource Website
Primate Cortical Connectivity Database (RRID:SCR_002468) Primate Cortical Connectivity Database data or information resource, bibliography Bibliography for primate cortical connectivity. The page displays the articles by their year of publication and links to PubMed. connectivity, cerebral cortex, monkey, primate THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-21332 SCR_002468 2026-08-20 09:25:48 0
CKAN
 
Resource Report
Resource Website
10+ mentions
CKAN (RRID:SCR_002622) CKAN software application, data management software, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. A complete out-of-the-box data management software solution that makes data accessible by providing tools to streamline publishing, sharing, finding and using data. CKAN is aimed at data publishers (national and regional governments, companies and organizations) wanting to make their data open and available. It uses its internal model to store metadata about the different records, and presents it on a web interface that allows users to browse and search this metadata. It also offers a powerful API that allows third-party applications and services to be built around it. CKAN is built with Python on the backend and Javascript on the frontend, and uses the Pylons web framework and SQLAlchemy as its ORM. Its database engine is PostgreSQL and its search is powered by SOLR. It has a modular architecture that allows extensions to be developed to provide additional features such as harvesting or data upload. CKAN is currently used by governments and user groups worldwide to power both official and community data portals. data management, python, javascript is used by: Datahub
is listed by: FORCE11
Free, Freely available nlx_156038 http://www.force11.org/node/4698 SCR_002622 ckan - The open source data portal software 2026-08-20 09:25:49 19
Non-Rigid Image Registration Evaluation Project
 
Resource Report
Resource Website
1+ mentions
Non-Rigid Image Registration Evaluation Project (RRID:SCR_002505) NIREP standard specification, narrative resource, data or information resource, database, software resource Project to develop software tools and provide shared image validation databases for rigorous testing of non-rigid image registration algorithms. NIREP will extend the scope of prior validation projects by developing evaluation criteria and metrics using large image populations, using richly annotated image databases, using computer simulated data, and increasing the number and types of evaluation criteria. The goal of this project is to establish, maintain, and endorse a standardized set of relevant benchmarks and metrics for performance evaluation of nonrigid image registration algorithms. Furthermore, these standards will be incorporated into an exportable computer program to automatically evaluate the registration accuracy of nonrigid image registration algorithms. magnetic resonance, registration software is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Iowa; Iowa; USA
NIBIB R33 EB004126 THIS RESOURCE IS NO LONGER IN SERVICE nlx_155904 http://www.nitrc.org/projects/nirep SCR_002505 Non-Rigid Image Registration Evaluation Project, Non-Rigid Image Registration Evaluation Project (NIREP) 2026-08-20 09:25:49 7
bioDBcore
 
Resource Report
Resource Website
1+ mentions
bioDBcore (RRID:SCR_002781) BioDBCore narrative resource, standard specification, database, data or information resource A community-defined, uniform, generic description of the core attributes of biological databases. The BioDBCore checklist is overseen by the International Society for Biocuration (ISB), in collaboration with the BioSharing forum. A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them have been partly compiled with the support of Oxford University Press and Re3Data.org. Database providers are encouraged to either create or claim their BioDBCore entry and update it as appropriate., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. resource representation, resource ontology, database, interoperability, semantic standard, syntactic standard, biological database, model is used by: NIF Data Federation
is listed by: 3DVC
is listed by: Biositemaps
is related to: FAIRsharing
is related to: Biocatalogue - The Life Science Web Services Registry
is related to: BioGPS: The Gene Portal Hub
is related to: Bioinformatics Links Directory
is related to: Biomedical Resource Ontology
is related to: EDAM Ontology
is related to: MIRIAM: Minimal Information Required In the Annotation of Models
is related to: SciCrunch Registry
is related to: PathGuide: the pathway resource list
is related to: Integrated Manually Extracted Annotation
has parent organization: University of Oxford; Oxford; United Kingdom
PMID:21205783
PMID:21097465
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-24395 SCR_002781 2026-08-20 09:25:57 2
Short Course on the Genetics and Epigenetics of Addiction National Institute on Drug Abuse: Archived Video
 
Resource Report
Resource Website
Short Course on the Genetics and Epigenetics of Addiction National Institute on Drug Abuse: Archived Video (RRID:SCR_002783) video resource, narrative resource, data or information resource, short course material, training material THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. An archived video on the web providing comprehensive and hands-on training in genetics and epigenetic methodology. The purpose of the course is to provide an introduction to approaches and tools for identifying genes that confer vulnerability to addiction and individual differences in responses to treatments. The course is targeted to those who are new to the field of addiction genetics. The course was held over 5 days with lectures and hands-on demonstrations given each day. Viewers of the course will gain familiarity with conceptual and practical approaches to complex disorders using relevant genetic and epigenetic databases, and appropriate statistical and empirical approaches. Topics covered Behavioral genetics, genetic epidemiology, twin and adoption studies, statistical genetic concepts and approaches for mapping complex traits, haplotype based approaches for association mapping, genome-wide scans for addictive disorders, application of linkage for mapping genes and genetic loci for addictive disorders, pharmacogenomics of treatment of addictive disorders, Baysian Methods for identifying gene-gene interactions, analysis of copy number variation, practical use of genetic databases, mapping of complex traits in mice, methods for analyzing gene expression, and methods for doing epigenetic analysis are covered. The course was held April 4, 2008, at the Bethesda North Marriott Hotel and Conference Center, 5701 Marinelli Road, Bethesda, MD 20852. epigenetic, gene-gene interactions, genes, genetic, genetic epidemiology, genetic loci, addiction, addiction genetics, addictive disorders, adoption studies, association mapping, baysian methods, behavioral genetics, complex traits, copy number variation, genome-wide scans, haplotype, mapping, mapping genes, methodology, mice, pharmacogenomics, twin studies THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00438 http://drugabuse.gov/about/organization/Genetics/geneticsepigenetics/index.html SCR_002783 Genetics and Epigenetics of Addiction 2026-08-20 09:26:03 0
Drug Information Portal
 
Resource Report
Resource Website
Drug Information Portal (RRID:SCR_002818) Drug Information Portal portal, database, topical portal, data or information resource The NLM Drug Information Portal gives users a gateway to selected drug information from the U.S. National Library of Medicine and other key U.S. Government agencies. At the top of the page are links to individual resources with potential drug information, including summaries tailored to various audiences. Resources include the NLM search systems useful in searching for a drug, NLM research resources, resources organized by audience and class, and other NIH and government resources such as FDA and CDC. The search box in the middle of the page lets you search many of these resources simultaneously. More than 34,000 drugs can be searched using this facility. The portal covers drugs from the time they are entered into clinical trials (Clinicaltrials.gov) through their entry in the U.S. market place (Drugs@FDA). Many drugs in other countries are covered, but not as thoroughly as U.S. drugs. The PubMed link provides medical literature describing research, and TOXLINE provides toxicology literature. Resources such as MedlinePlus provide easy to read summaries of the uses and efficacy of a drug. You may search by a drug's trade name or generic name. For example, the trade name Advil and the generic name ibuprofen will retrieve the same drug record. As you type in a name, suggestions are given beneath the search box. A spell checker gives suggestions if the name is not found. You can find embedded portions of names by using an asterisk at the beginning and/or end of a search term. You can also search by the general Category of usage of a drug by checking that radio button. Suggestions are given as you type here too. Once a drug is found, a summary of the drug's type and usage is given, as well as links leading to further information at one of the portal's resources. Outside links open in a new window. Within a given drug record, you may click on the drug category and retrieve drugs with the same or similar uses. * View drug category descriptions. * View top By Name searches (previous seven days). * View top By Category searches (previous seven days). * View top dispensed prescriptions in the US Market, 2010. * View common drug name list. * View category name list. * View list of resources searched. JavaScript must be enabled in your browser for the NLM Drug Information Portal to work properly. drug, catalog, medicine, prescription has parent organization: National Library of Medicine NLM PMID:19384716 Free, Freely available nif-0000-24913 SCR_002818 Drug Information Portal - Quick Access to Quality Drug Information, NLM Drug Information Portal 2026-08-20 09:26:04 0
Genomes Online Database
 
Resource Report
Resource Website
100+ mentions
Genomes Online Database (RRID:SCR_002817) GOLD storage service resource, service resource, data or information resource, data repository, database Database of information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. It also provides information related to organism properties such as phenotype, ecotype and disease. Both complete and ongoing projects, along with their associated metadata, can be accessed. Users can also register, annotate and publish genome and metagenome data. genome, genetics, metagenome, biosample, phenotype, ecotype, disease, sequencing, FASEB list is listed by: re3data.org
has parent organization: DOE Joint Genome Institute
PMID:22135293
PMID:19914934
PMID:17981842
PMID:16381880
PMID:11125068
PMID:10498782
Free, Freely available, Available for download r3d100010808, nif-0000-02918 https://doi.org/10.17616/R39310 SCR_002817 Genomes On Line Database (GOLD), GOLD:Genomes Online Database 2026-08-20 09:25:55 161
GeneSpeed- A Database of Unigene Domain Organization
 
Resource Report
Resource Website
GeneSpeed- A Database of Unigene Domain Organization (RRID:SCR_002779) production service resource, service resource, resource, data analysis service, data or information resource, analysis service resource, database THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 16, 2013. Database and customized tools to study the PFAM protein domain content of the transcriptome for all expressed genes of Homo sapiens, Mus musculus, Drosophila melanogaster, and Caenorhabditis elegans tethered to both a genomics array repository database and a range of external information resources. GeneSpeed has merged information from several existing data sets including the Gene Ontology Consortium, InterPro, Pfam, Unigene, as well as micro-array datasets. GeneSpeed is a database of PFAM domain homology contained within Unigene. Because Unigene is a non-redundant dbEST database, this provides a wide encompassing overview of the domain content of the expressed transcriptome. We have structured the GeneSpeed Database to include a rich toolset allowing the investigator to study all domain homology, no matter how remote. As a result, homology cutoff score decisions are determined by the scientist, not by a computer algorithm. This quality is one of the novel defining features of the GeneSpeed database giving the user complete control of database content. In addition to a domain content toolset, GeneSpeed provides an assortment of links to external databases, a unique and manually curated Transcription Factor Classification list, as well as links to our newly evolving GeneSpeed BetaCell Database. GeneSpeed BetaCell is a micro-array depository combined with custom array analysis tools created with an emphasis around the meta analysis of developmental time series micro-array datasets and their significance in pancreatic beta cells. molecular neuroanatomy resource, drosophila melanogaster, genome, caenorhabditis elegans, c. elegans, genomics, homo sapiens, mus musculus, protein domain, transcriptome is related to: Gene Ontology
is related to: InterPro
is related to: Pfam
is related to: UniGene
has parent organization: University of Colorado Denver; Colorado; USA
NIDDK P30DK57516;
NIDDK DK61248
PMID:17132830 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-02887 http://genespeed.uchsc.edu/, http://genespeed.ccf.org SCR_002779 GeneSpeed Database 2026-08-20 09:26:02 0
Cancer Genomics Hub
 
Resource Report
Resource Website
100+ mentions
Cancer Genomics Hub (RRID:SCR_002657) CGHub storage service resource, service resource, data or information resource, data repository, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. A secure repository for storing, cataloging, and accessing cancer genome sequences, alignments, and mutation information from the Cancer Genome Atlas (TCGA) consortium and related projects. CGHub gives scientific researchers the statistical power of large cancer genome datasets to attack the molecular complexity of cancer. genome, genome sequence, alignment, mutation has parent organization: University of California at Santa Cruz; California; USA Cancer PMID:25267794 THIS RESOURCE IS NO LONGER IN SERVICE. r3d100011174, nlx_156095 https://doi.org/10.17616/R3F919 SCR_002657 2026-08-20 09:25:54 179

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. NIDDK Information Network Resources

    Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.