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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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National Institute on Aging, Division of Neuroscience Resource Report Resource Website |
National Institute on Aging, Division of Neuroscience (RRID:SCR_008257) | data or information resource, funding resource, narrative resource, portal, topical portal | A funding resource that supports the research and training for understanding the structure and function of the aging nervous system, with an emphasis on studies involving Alzheimer's disease and age-related dementia. There is an emphasis on brain-behavior relationships. This program is composed of three branches: Neurobiology, Neuropsychology, and Dementias of Aging. The overall aim of this program is to understand the aging nervous system to minimize mental decline and improve the lives of older patients. This resource also includes links to sites for Alzheimer's disease (AD) studies that include: specimen repositories, genetic materials, bio-markers, data, policies on NIA and AD genetics sharing plans, and additional aging or other AD related links. | epidemiological, alzheimer's disease, brain, clinical, dementia, nervous system, neurobiology, neuropsychology, pathological, research, | Aging | R21-Exploratory/Development Grants ; NIH Neuroscience Blueprint initiatives |
nif-0000-22438 | http://www.nia.nih.gov/ResearchInformation/ExtramuralPrograms/NeuroscienceOfAging/ | SCR_008257 | NIA Division of Neuroscience, NIA DN, National Institute on Aging Division of Neuroscience, National Institute on Aging DN | 2026-09-05 06:26:19 | 0 | |||||||
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Brain Connection Resource Report Resource Website |
Brain Connection (RRID:SCR_008315) | data or information resource, narrative resource, training material | An educational site providing accessible information about how the brain works and how people learn | behavior, brain, connection, human, illness, injury, memory, work, language | Aging | nif-0000-24681 | SCR_008315 | Brain Connection | 2026-09-05 06:26:20 | 0 | |||||||||
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Sub-Volume Thresholding Analysis Resource Report Resource Website |
Sub-Volume Thresholding Analysis (RRID:SCR_008272) | SVT | data analysis software, data processing software, software application, software resource | Software tool for determining the statistically significant regions of activation in single or multi-subject human brain functional studies. It can be also applied to structural brain data for analyzing developmental, dementia and other changes of anatomy over time. This package was originally developed to work on Sun SPARC and SGI stations using the "C" language compiler provided by Sun/SGI as part of the standard system software. | data processing, data analysis, functional magnetic resonance imaging, fMRI, software, brain, brain functional studies |
is related to: Laboratory of Neuro Imaging has parent organization: University of Southern California; Los Angeles; USA |
NIBIB 9P41EB015922-15; NCRR 2-P41-RR-013642-15 |
Available for educational and research purposes only | nif-0000-23314 | SCR_008272 | 2026-09-05 06:26:20 | 0 | |||||||
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Oregon National Primate Research Center Resource Report Resource Website 100+ mentions |
Oregon National Primate Research Center (RRID:SCR_008291) | ONPRC | institution | Center that aims to develop biomedical technologies using nonhuman primate (NHP) models. Its goal is to uncover the root causes of various disease and disorders, unlock secrets of the brain, and unleash new methods of diagnostics and treatment. | NPRC, NPRC Consortium, ORIP, enhancement, genetic, aids, animal, biomedical, brain, cancer, cure, delivery, depression, developmental, diabetes, diagnostic, disease, disorder, health, human, model, nonhuman, obesity, premature, primate, reproductive, research, scientific, stem cell, technology, therapy, treatment, vaccine | is listed by: National Primate Research Center Consortium | NIH Office of the Director P51 OD011092; NIH Office of the Director R24 OD021324; NIH Office of the Director U42 OD010426; NIH Office of the Director U42 OD023038 |
Wikidata: Q7101277, Crossref funder ID: 100008143, nif-0000-24358, grid.410436.4, ISNI: 0000 0004 0619 6542 | https://ror.org/05fcfqq67 | SCR_008291 | ONPRC | 2026-09-05 06:26:20 | 125 | ||||||
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Neuropathology of CTE and Delayed Effects of TBI: Toward In-Vivo Diagnostics Resource Report Resource Website |
Neuropathology of CTE and Delayed Effects of TBI: Toward In-Vivo Diagnostics (RRID:SCR_012951) | Neuropathology of CTE and Delayed Effects of TBI: Toward In-Vivo Diagnostics | data or information resource, disease-related portal, portal, research forum portal, topical portal | A multi-center and multi-disciplinary study designed to dramatically increase understanding of chronic traumatic encephalopathy (CTE) and other late effects of traumatic brain injury (TBI). Overlapping clinical features, postmortem pathologies and patterns of involvement exist in TBI, CTE, and Alzheimer''s disease pose challenges to accurate diagnosis. Premortem diagnosis of CTE is currently impossible. The neuropathological consequences of single mild or moderate-severe TBI and its relationship with CTE and known dementias are unclear. The proposed project will leverage extensive resources from an ongoing population-based prospective cohort study of brain aging (Adult Changes in Thought; ACT, n=2,305) which includes excellent medical, behavioral, and genetic characterization of a cohort (20% of whom have a history of mild-moderate TBI) in addition to state-of-the-art neuropathology workup upon death. Neuropathological study of TBI effects can begin immediately in the existing ACT autopsy sample (n=489, 20% with TBI exposure). Additional cohorts of TBI- exposed individuals will come from the Brain Injury Research Center at Mount Sinai (n=150 individuals with moderate-severe TBI), the University of Texas Southwestern (n=50 retired boxers with repetitive TBI exposure), and the National Football League (n=76 retired players with repetitive TBI exposure). All participants in the proposed study (ACT and other sites) will undergo uniform harmonized neurobehavioral assessment (chosen to maximize correspondence with existing large-scale TBI and dementia studies), MRI scan, and genomic analysis. Those individuals who expire during the course of the study will undergo ex-vivo neuroimaging and extensive neuropathological exam using state-of-the-art techniques (such as Histelide) designed to quantify tau and A�� in whole brain specimens. Only by examining postmortem pathology in a sample of individuals with varying levels of TBI exposure who are well characterized during life (as proposed herein) can postmortem pathology facilitate identification of in-vivo biomarkers that can act as diagnostic tools. This project represents the most systematic and scientifically rigorous effort to date to develop a more complete understanding of the long-term clinical and neuropathological sequelae of single and multiple TBI. | cognitive decline, health decline, dementia, symptom, incidence, prevalence, risk factor, causal role, multifocal tauopathy, neuropathology, neuroimaging, brain, biomarker, diagnosis, clinical | has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA | Chronic traumatic encephalopathy, Traumatic brain injury, Aging | nlx_156787 | SCR_012951 | Neuropathology of CTE and Late Effects of TBI: Toward In-Vivo Diagnostics, Neuropathology of Chronic Traumatic Encephalopathy (CTE) and Late Effects of Traumatic Brain Injury (TBI): Toward In-Vivo Diagnostics | 2026-09-05 06:27:30 | 0 | |||||||
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Northwestern CNADC Tissue Bank / Neuropathology Core Resource Report Resource Website |
Northwestern CNADC Tissue Bank / Neuropathology Core (RRID:SCR_013178) | biomaterial supply resource, brain bank, material resource, tissue bank | Tissue bank for collecting, cataloging and storing postmortem brain tissue samples from subjects with and without neurological disorders. Specimens are available for research on cognitive impairment, Alzheimer's, dementia and other disorders along with clinical data such as demographic information, health and family history and neuropsychological test scores. The bank provides services to distribute postmortem brain tissue and other samples to investigators for use in research that will provide qualitative and quantitative diagnostic information to physicians, families, and researchers. | brain tissue, brain, tissue, plasma, blood, dna, cerebral spinal fluid, paraformaldehyde-fixed, frozen, paraffin block, unfixed, late adult human, autopsy, post-mortem, clinical dementia rating scale, mini mental state examination, neuropathology, clinical data, alzheimer's disease, dementia, normal control, non-demented control, dementia with lewy body, frontotemporal lobar degeneration, pick disease, corticobasal degeneration, tauopathy, progressive supranuclear palsy, tangle-predominant senile dementia, amyotrophic lateral sclerosis, motor neuron disease, vascular dementia, mild cognitive impairment, research, brain bank, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Northwestern University Cognitive Neurology and Alzheimers Disease Center |
Alzheimer's disease, Dementia, Dementia with Lewy body, Frontotemporal lobar degeneration, Pick disease, Corticobasal degeneration, Tauopathy, Progressive Supranuclear Palsy, Tangle-predominant senile dementia, Amyotrophic Lateral Sclerosis, Motor Neuron Disease, Vascular dementia, Mild cognitive impairment, Aging | NIA P30 AG13854 | Available to the research community | nlx_144054 | http://www.brain.northwestern.edu/mdad/neuropathology.html | SCR_013178 | Northwestern University Cognitive Neurology and Alzheimer's Disease Center Tissue/Neuropathology Core, Northwestern University CNADC Tissue/Neuropathology Core, Northwestern's Cognitive Neurology and Alzheimers Disease Center Tissue/Neuropathology Core, Northwestern Tissue/Neuropathology Core, Northwestern Neuropathology Core of CNADC, Northwestern Cognitive Neurology and Alzheimer's Disease Center Tissue/Neuropathology Core, Northwestern Cognitive Neurology Alzheimer's Disease Center Tissue/Neuropathology Core, Northwestern CNADC Tissue / Neuropathology Core, Northwestern University CNADC Tissue / Neuropathology Core | 2026-09-05 06:27:33 | 0 | |||||
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Djavad Mowafaghian Centre for Brain Health Resource Report Resource Website 1+ mentions |
Djavad Mowafaghian Centre for Brain Health (RRID:SCR_013149) | Brain Research Centre | data or information resource, portal, topical portal | Research facility for research on neurological and psychiatric disorders on the learning brain and the aging brain. The Centre utilizes a multidisciplinary approach to explore the causes and potential treatments of disorders like Alzheimer's disease, mental health and addiction, stroke and neurotrauma. The Centre focuses on translating research into patient care and therapies. | neurodegeneration, neurological disorder, mental disease, neuroscience, research, alzheimer's disease, parkinson's disease, amyotrophic lateral sclerosis, multiple sclerosis, mental health, addiction, stroke, neurotrauma, neuroimaging, genomics, peptide synthesis, purification, learning, pain, synaptic function, plasticity, traumatic brain injury, spinal cord injury, eye, brain, research, psychiatry, aging | has parent organization: University of British Columbia; British Columbia; Canada | Psychiatric disorder, Neurodegeneration, Neurological disorder, Alzheimer's disease, Parkinson's disease, Amyotrophic Lateral Sclerosis, Multiple Sclerosis, Addiction, Stroke, Neurotrauma, Aging, Learning, Pain, Traumatic brain injury | Public, Available to the research community | nlx_144253 | http://www.brain.ubc.ca/Home.htm | SCR_013149 | Brain Research Centre | 2026-09-05 06:27:32 | 1 | |||||
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SPM Anatomy Toolbox Resource Report Resource Website 100+ mentions |
SPM Anatomy Toolbox (RRID:SCR_013273) | SPM Anatomy Toolbox | software resource | A MATLAB toolbox which uses three dimensional probabilistic cytoarchitechtonic maps to correlate microscopic, anatomic and functional data of the cerebral cortex. Correlating the activation foci identified in functional imaging studies of the human brain with structural (e.g., cytoarchitectonic) information on the activated areas is a major methodological challenge for neuroscience research. We here present a new approach to make use of three-dimensional probabilistic cytoarchitectonic maps, as obtained from the analysis of human post-mortem brains, for correlating microscopical, anatomical and functional imaging data of the cerebral cortex. We introduce a new, MATLAB based toolbox for the SPM2 software package which enables the integration of probabilistic cytoarchitectonic maps and results of functional imaging studies. The toolbox includes the functionality for the construction of summary maps combining probability of several cortical areas by finding the most probable assignment of each voxel to one of these areas. Its main feature is to provide several measures defining the degree of correspondence between architectonic areas and functional foci. The software, together with the presently available probability maps, is available as open source software to the neuroimaging community. This new toolbox provides an easy-to-use tool for the integrated analysis of functional and anatomical data in a common reference space. | human, brain, imaging, functional magnetic resonance imaging, structure, mapping, atlas, pet, neuroimaging | is related to: SPM | NIMH ; NINDS ; NIBIB ; DFG KFO-112; DFG Schn 362/13-2 |
PMID:15850749 | nif-0000-10477 | SCR_013273 | 2026-09-05 06:27:34 | 108 | |||||||
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HED Tags Resource Report Resource Website 1+ mentions |
HED Tags (RRID:SCR_014074) | HED | data or information resource, narrative resource, standard specification | Strategy guide for HED Annotation. Framework for systematically describing laboratory and real world events.HED tags are comma separated path strings. Organized in forest of groups with roots Event, Item, Sensory presentation, Attribute, Action, Participant, Experiment context, and Paradigm. Used for preparing brain imaging data for automated analysis and meta analysis. Applied to brain imaging EEG, MEG, fNIRS, multimodal mobile brain or body imaging, ECG, EMG, GSR, or behavioral data. Part of Brain Imaging Data Structure standard for brain imaging. | Data, structure, standard, EEG, brain, imaging, comma, separated, path, string, analysis, MEG, fNIRS, multimodal, ECG, EMG, GSR, behavioral, BRAIN Initiative |
is used by: NIMH Data Archive is used by: HeadIT is used by: OpenNeuro is recommended by: BRAIN Initiative has parent organization: University of California at San Diego; California; USA |
Army Research Laboratory Cooperative Agreement ; NIMH R01MH084819; NINDS R01 NS047293; Swartz Foundation |
PMID:27799907 | Free, Freely available | SCR_017630 | SCR_014074 | Hierarchical Event Descriptor Tags, Hierarchical Event Descriptor, HED, HED tags | 2026-09-05 06:27:42 | 8 | |||||
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FluoRender Resource Report Resource Website 100+ mentions |
FluoRender (RRID:SCR_014303) | data analysis software, data processing software, data visualization software, software application, software resource | Interactive rendering tool for confocal microscopy data visualization. Combines rendering of multi-channel volume data and polygon mesh data, where properties of each dataset can be adjusted independently and quickly. Designed for neurobiologists, allowing them to better visualize confocal data from fluorescently-stained brains, but it is also useful for other biological samples. Features include feature tracking, 3D measurement tools, multiple render modes for multi-channel confocal data, and volume paint selection and segmentation. | rendering tool, confocal microscopy data visualization, neurobiology, fluorescent stain, brain, bio.tools |
is used by: VVD Viewer is listed by: bio.tools is listed by: Debian has parent organization: University of Utah; Utah; USA |
Free, Available for download, Freely available | biotools:fluorender | https://bio.tools/fluorender | SCR_014303 | FluoRender Visualization | 2026-09-05 06:27:45 | 130 | |||||||
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Visible Human Transverse Section Through the Head Resource Report Resource Website |
Visible Human Transverse Section Through the Head (RRID:SCR_001966) | atlas, data or information resource, portal | Portal for learning resources about the brain. It includes information and interactive images of transverse brain sections. | brain, imaging, education, learning | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10547 | SCR_001966 | 2026-09-05 06:30:37 | 0 | ||||||||||
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Connectir Resource Report Resource Website 1+ mentions |
Connectir (RRID:SCR_000863) | Connectir | data processing software, image analysis software, software application, software resource | An R-based package to conduct brain connectivity analyses with a focus on a novel approach to conducting Connectome-Wide Association Studies (CWAS) using functional connectivity. | console (text based), magnetic resonance, r, connectivity, brain, connectome-wide association study, functional connectivity | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155729 | http://www.nitrc.org/projects/connectir | SCR_000863 | 2026-09-05 06:30:36 | 1 | |||||||
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IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI Resource Report Resource Website 1+ mentions |
IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI (RRID:SCR_000539) | IMPACT | data or information resource, portal, project portal | Project focused on advancing knowledge of prognosis, trial design and treatment in Traumatic Brain Injury. IMPACT has developed and validated prognostic models for classification and characterization of TBI series, and participated in development of standardization of data collection in TBI studies. | traumatic brain injury, common data element, clinical research, treatment, head injury, data set, randomized controlled trial, one mind tbi, brain, clinical trial | is parent organization of: IMPACT Prognostic Calculator | Traumatic brain injury | NINDS NS 042691 | nlx_143883 | SCR_000539 | International Mission for Prognosis and Analysis of Clinical Trials in TBI, TBI-IMPACT | 2026-09-05 06:30:35 | 3 | ||||||
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HUDSEN Electronic Atlas of the Developing Human Brain Resource Report Resource Website 1+ mentions |
HUDSEN Electronic Atlas of the Developing Human Brain (RRID:SCR_002056) | EADHB, HUDSEN EADHB | atlas, data or information resource, video resource | Interactive digital atlas and movies comprising 3-D reconstructions at all stages of human development from Carnegie Stage 12 (CS12; ~26 days post conception (dpc)) to CS23 (~ 56 dpc) and anatomical annotations of the 3-D models linked to an anatomical database. The 3D models are generated using Optical Projection Tomography (OPT; Sharpe et al 2002). The digital atlas is also linked to a gene expression database that has been developed from the Edinburgh Mouse Atlas Project gene expression database (EMAGE). In the future, the HUDSEN EADHB aims to provide the wider scientific and medical communities with a dynamic tool for documenting and analyzing gene expression patterns and morphological changes in the developing human brain. | human development, carnegie stage, annotation, optical projection tomography, embryonic human, embryo, 3d, 3d model, brain, gene expression, anatomy, molecular neuroanatomy resource, developing |
is related to: EMAGE Gene Expression Database has parent organization: HUDSEN has parent organization: Newcastle University; Newcastle upon Tyne; United Kingdom |
NIMH R01 MH070370; NICHD HD39928-02 |
PMID:20979583 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-12494 | http://www.ncl.ac.uk/ihg/EADHB/ | SCR_002056 | Electronic Atlas of the Developing Human Brain | 2026-09-05 06:30:37 | 1 | ||||
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Tennenbaum Center for the Biology of Creativity Resource Report Resource Website |
Tennenbaum Center for the Biology of Creativity (RRID:SCR_000668) | data or information resource, organization portal, portal | The purpose of this center is to study the molecular, cellular, systems and cognitive mechanisms that result in cognitive enhancements and explain unusual levels of performance in gifted individuals, including extraordinary creativity. Additionally, by understating the mechanisms responsible for enhancements in performance we may be better suited to intervene and reverse disease states that result in cognitive deficits. One of the key topics addressed by the Center is the biological basis of cognitive enhancements, a topic that can be studied in human subjects and animal models. In the past much of the focus in the brain sciences has been on the study of brain mechanisms that degrade cognitive performance (for example, on mutations or other lesions that cause cognitive deficits). The Tennenbaum Center for the Biology of Creativity at UCLA enables an interdisciplinary team of leading scientists to advance knowledge about the biological bases of creativity. Starting with a pilot project program, a series of investigations was launched, spanning disciplines from basic molecular biology to cognitive neuroscience. Because the concept of creativity is multifaceted, initial efforts targeted refinement of the component processes necessary to generate novel, useful cognitive products. The identified core cognitive processes: 1.) Novelty Generation the ability to flexibly and adaptively generate products that are unique; 2.) Working Memory and Declarative Memory the ability to maintain, and then use relevant information to guide goal-directed performance, along with the capacity to store and retrieve this information; and 3.) Response Inhibition the ability to suppress habitual plans and substitute alternate actions in line with changing problem-solving demands. To study the basic mechanisms underlying these complex brain functions we use translational strategies. Starting from foundational studies in basic neuroscience, we forged an interdisciplinary strategy that permits the most advanced techniques for genetic manipulation and basic neurobiological research to be applied in close collaboration with human studies that converge on the same core cognitive processes. Our integrated research program aims to reveal the genetic architecture and fundamental brain mechanisms underlying creative cognition. The work holds enormous promise for both enhancing healthy cognitive performance and designing new treatments for diverse cognitive disorders. Sponsors: The Tennenbaum Center for the Biology of Creativity was inspired by the vision and generosity of Michael Tennenbaum. | generation, genetic, animal, biological, brain, brain science, cellular, cognitive, cognitive deficit, cognitive disorder, cognitive neuroscience, creativity, declarative memory, disease, habitual, human, inhibition, mechanism, memory, model, molecular, molecular biology, neurobiological, performance, response, working memory | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10497 | SCR_000668 | UCLA CBC | 2026-09-05 06:30:35 | 0 | |||||||||
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DTI-TEMPLATE-RHESUS-MACAQUES Resource Report Resource Website 1+ mentions |
DTI-TEMPLATE-RHESUS-MACAQUES (RRID:SCR_002482) | DTI-TEMPLATE-RHESUS-MACAQUES | atlas, data or information resource, reference atlas | A population-specific DTI template for young adolescent Rhesus Macaque (Macaca mulatta) monkeys using 271 high-quality scans. Using such a large number of animals in generating a template allows it to account for variability in the species. Their DTI template is based on the largest number of animals ever used in generating a computational brain template. It is anticipated that their DTI template will help facilitate voxel-based and tract specific WM analyses in non-human primate species, which in turn may increase our understanding of brain function, development, and evolution. | magnetic resonance, dti, young, adolescent, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Wisconsin-Madison; Wisconsin; USA |
NIMH MH62015; NIMH MH084051; NIMH MH080826; NIMH MH46729; NIMH MH81884; NIMH MH018931; NIBIB R03-EB009321 |
PMID:21803162 | Free, Available for download, Freely available | nlx_155872 | SCR_002482 | 2026-09-05 06:30:38 | 3 | ||||||
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GenePaint P56 Mouse Atlas Resource Report Resource Website |
GenePaint P56 Mouse Atlas (RRID:SCR_002788) | GenePaint Map P56 | atlas, data or information resource, reference atlas | Abbreviated reference atlas for the P56 mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing is permitted between planes of sectioning thus allowing the most appropriate plane to be selected. Abbreviations are found in a list accessed by clicking the see abbreviation link at the bottom of each map. Alternatively, passing the cursor directly across the abbreviation on the map will result in the appearance of the appropriate term in the rider on top of the map panel. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). | gene, adult mouse, anatomical, anatomy, annotation, atlas, basal forebrain, brain, cerebellum, cortex, globus pallidus, hippocampus, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, p56, pons, region, septum, stained, striatum, thalamus, tract, ventral striatum, image, gene expression |
is related to: GenePaint E15 Atlas is related to: GenePaint P7 Atlas is related to: GenePaint P7 Atlas has parent organization: GenePaint |
nif-0000-24450 | SCR_002788 | GenePaint P56 Mouse Atlas, GenePaint Mouse Brain Map P56 | 2026-09-05 06:30:38 | 0 | ||||||||
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Allen Mouse Brain Reference Atlas Resource Report Resource Website 100+ mentions |
Allen Mouse Brain Reference Atlas (RRID:SCR_002978) | ABA, ARA, ABA Mouse Brain | atlas, data or information resource, reference atlas | Allen Mouse Brain Atlas includes full color, high resolution anatomic reference atlas accompanied by systematic, hierarchically organized taxonomy of mouse brain structures. Enables interactive online exploration of atlas and to provide deeper level of 3D annotation for informatics analysis and viewing in Brain Explorer 3D viewer. | 3D, map, gene, expression, data, adult, mouse, brain, interactive, image |
is used by: NIF Data Federation is used by: BICCN is related to: BrainStars is related to: PubAnatomy is related to: Integrated Brain Gene Expression is related to: Allen Brain Atlas API is related to: 3DBar is related to: aGEM is related to: CellTax vignette is related to: Blue Brain Cell Atlas is related to: Allen Mouse Brain Common Coordinate Framework is related to: SHARCQ is related to: Enhancer Trap Line Browser is related to: Linked Neuron Data has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas works with: MeshView works with: Brain Gene Expression Analysis toolbox works with: VisuAlign works with: MIRACL |
Free, Freely available | SCR_013286, nlx_21010, nif-0000-00508 | http://mouse.brain-map.org/atlas/index.html, http://mouse.brain-map.org/ | SCR_002978 | Allen Mouse Brain Reference Atlas, Allen Reference Atlases, ABA Adult Mouse Brain, ARA ontology | 2026-09-05 06:30:38 | 453 | ||||||
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Allen Institute for Brain Science Transgenic Mouse Study Resource Report Resource Website 1+ mentions |
Allen Institute for Brain Science Transgenic Mouse Study (RRID:SCR_002999) | Allen Transgenic Study | atlas, data or information resource, data set | A comprehensive characterization of expression patterns of genetically-controlled markers or tool genes in the brains of transgenic mice generated by the Allen Institute as well as the broad scientific community. Providing standardized, detailed, anatomical profiling of transgene expression throughout the brain, this dataset is intended to reveal the potential of each transgenic mouse line and help researchers choose the appropriate tools for their studies. Transgenic mice are valuable tools to label selective neuronal or non-neuronal populations, modulate gene expression in these cells or manipulate activity of these cells for the study of neural circuits and brain function. The Allen Institute has launched a project to generate a variety of transgenic mouse lines, mainly using the Cre/lox system, to express fluorescent probes or neuronal activity manipulating tools in a variety of cell types in the brain. At the same time, utilizing Allen Institute's unique high-throughput capability, a pipeline is set up to characterize the ability in directing cell type specific expression in the brains of various transgenic mice generated by the Allen Institute as well as the broad scientific community. Through standardized, detailed, anatomical profiling of the transgene expression in the entire mouse brain, this dataset is intended to provide a comprehensive evaluation of the potential of each transgenic mouse line and help researchers choose the appropriate transgenic tools to study the function of different regions and/or cell types of the brain. This data release adds additional data to the existing set of new Cre-reporter lines generated at the Allen Institute that have stronger expression than other commonly used reporter lines are used to characterize approximately a dozen Cre-driver lines. The types of characterization data include digitized images (of sections sampling the entire brain) of colorimetric in situ hybridization (CISH), double fluorescent in situ hybridization (DFISH), native fluorescence of XFP (generic term for fluorescent proteins of different colors), and immunohistochemical (IHC) labeling of marker genes. | expression, gene expression, brain, brain function, cell, colorimetric, in situ hybridization, double fluorescent, image, immunohistochemical, marker genes, mouse, mouse line, native fluorescence of xfp, neural circuits, transgenic mice, molecular neuroanatomy resource |
is related to: JAX Cre Repository has parent organization: Allen Institute for Brain Science |
nif-0000-00512 | SCR_002999 | Transgenic Mouse Study | 2026-09-05 06:30:38 | 4 | ||||||||
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Rat Brain Atlas of Paxinos and Watson Resource Report Resource Website 10+ mentions |
Rat Brain Atlas of Paxinos and Watson (RRID:SCR_006369) | Rat Brain Atlas of Paxinos & Watson | atlas, data or information resource, reference atlas | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 27,2025. Compact 3rd edition of The Rat Brain Atlas of Paxinos & Watson published in 1997, it is the most widely used stereotaxic reference system for rat brain. The illustrations and nomenclature of the atlas have become standard tools used by almost all research neuroscientists who deal with anatomy, physiology, or function. It has been subsequently updated, with the 6th edition being the most recent. The 3rd edition is the most recent one available online for free. The program runs in Adobe Acrobat Reader. | rat, stereotaxic coordinate, brain, neuroanatomy | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152120 | SCR_006369 | Rat Brain Atlas - Paxinos & Watson, Rat Brain in Stereotaxic Coordinates | 2026-09-05 06:30:42 | 20 |
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