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https://github.com/jbelyeu/SV-plaudit

Software for rapidly curating structural variant (SVs) predictions. SV-plaudit provides a pipeline for creating image views of genomic intervals, automatically storing them in the cloud, deploying a website to view/score them, and retrieving scores for analysis.

Proper citation: SV-plaudit (RRID:SCR_016285) Copy   

•   Source: SciCrunch Registry

https://sites.google.com/site/sigenproject/

Software to extract and trace neuronal structure from confocal laser scanning microscope images. It performs the automatic reconstruction of neurons for image stacks and can generate compartmental models of neurons as swc file format data.

Proper citation: SIGEN (RRID:SCR_016284) Copy   

•   Source: SciCrunch Registry

https://www.jax.org/jax-mice-and-services

Supplier of mice for research purposes.

Proper citation: JAX Mice and Services (RRID:SCR_016408) Copy   

•   Source: SciCrunch Registry

https://www.modelorg.bio/

Global biotechnology company based in Shanghai, China, specializing in custom model organisms, humanized and immunodeficient mice, and gene-editing services for preclinical research. Alternatively, in molecular biology, it can refer to knockout or mutant mice lacking the Smoc1 or Smoc2 genes (secreted modular calcium-binding proteins) used to study embryonic, eye, and limb development.Supplier of mice for research purposes. Provides technical services, model organisms, gene editing and decoding.

Proper citation: Shanghai Model Organisms Center (RRID:SCR_016407) Copy   

•   Source: SciCrunch Registry

http://www.nrcmm.cn/

Supplier of mice for research purposes.

Proper citation: National Resource Center for Mutant Mice (RRID:SCR_016406) Copy   

•   Source: SciCrunch Registry

https://www.taconic.com/

Supplier of mice for research purposes.

Proper citation: Taconic Biosciences (RRID:SCR_016410) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/mugqic/genpipes/src/master/

Software for genomics and bioinformatics analysis. GenPipes includes several python pipelines that cover many genomics applications, such as RNASeq, ChIPSeq, DNASeq, WGBS, HiC, Metagenomics, PacBio assembly, etc.

Proper citation: GenPipes (RRID:SCR_016376) Copy   

•   Source: SciCrunch Registry

https://www.genomics.agilent.com/article.jsp?pageId=2100

Software that performs data analysis algorithms for QPCR data. The software is included with the purchase of the Agilent MxPro QPCR System., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: MxPro QPCR (RRID:SCR_016375) Copy   

•   Source: SciCrunch Registry

http://bioconductor.org/packages/release/bioc/html/MetaCyto.html

Software tool for automated meta-analysis of mass and flow cytometry data. Provides functions for preprocessing, automated gating and meta-analysis of cytometry data and collection of cytometry data from the ImmPort database.

Proper citation: MetaCyto (RRID:SCR_016415) Copy   

•   Source: SciCrunch Registry

http://www.xenopus.com/

Supplier of Frogs and Tadpoles for the scientific community.

Proper citation: Xenopus Express (RRID:SCR_016373) Copy   

•   Source: SciCrunch Registry

http://homer.ucsd.edu/homer/microarray/index.html

Software tool to analyze the promoters of genes and look for motifs that are enriched in the target gene promoters relative to other promoters. Used for gene based analysis to provide a list of genes that should contain the same elements, such as genes that are co-regulated. It includes gene ontology analysis and can be used to look for RNA motifs in mRNAs.

Proper citation: findMotif.pl (RRID:SCR_016417) Copy   

•   Source: SciCrunch Registry

http://www.monicahealthcare.com/products/labour-and-delivery/monica-novii-wireless-patch-system

A peel and stick in-room ambulatory fetal monitoring solution by Monica Healthcare Ltd. Measures fetal heart rate (FHR), maternal heart rate (MHR) and uterine activity (UA).

Proper citation: Monica monitor (RRID:SCR_016416) Copy   

•   Source: SciCrunch Registry

http://www.cycif.org/

Web page for cyclic immunofluorescence. It lists several downloadable data and software pertaining to cyclic immunofluorescence.

Proper citation: CycIF.org (RRID:SCR_016267) Copy   

•   Source: SciCrunch Registry

http://en.toitu.co.jp/mt-516/

Fetal actocardiograph instrument provided by TOITU CO., LTD.

Proper citation: Fetal Actocardiograph MT-516 (RRID:SCR_016420) Copy   

•   Source: SciCrunch Registry

https://omabrowser.org/oma/

Web based database interface for orthology prediction for the inference of orthologs among complete genomes. Used to relate genes across many species., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: OMA Orthology database (RRID:SCR_016425) Copy   

•   Source: SciCrunch Registry

https://github.molgen.mpg.de/MPIBR-coattia/MatlabMain/tree/master/behaviorAnalysis/code/NSKtoolbox/externalToolboxes/kCSDv1

Software tool for analyzing recordings from multielectrodes. Source code for the Matlab implementation of the Kernel Current Source Density method. The method operates in one-, two-, and three-dimensional space to perform nonparametric estimation of transmembrane current sources from local field potentials recorded from arbitrarily distributed electrodes.

Proper citation: kCSD-Matlab (RRID:SCR_016424) Copy   

•   Source: SciCrunch Registry

https://metadatacenter.org

Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle.

Proper citation: Center for Expanded Data Annotation and Retrieval (RRID:SCR_016269) Copy   

•   Source: SciCrunch Registry

https://lifescience.bioquant.com/

Software tool to collect and analyse data on images of tissue slides or welled plates.Supports high-throughput immunofluorescence and immunohistochemistry, stereology, densitometry, and 3D modeling. Used in bioscience research in animal models and human biopsy, developmental neuroscience, traumatic brain/spinal cord injury, glaucoma, eye-movement disorders, cardiovascular disease and muscle disorders.

Proper citation: BIOQUANT Life Science (RRID:SCR_016423) Copy   

•   Source: SciCrunch Registry

https://www.illumina.com/systems/sequencing-platforms/miseqdx.html

MiSeqDx System is FDA-regulated, CE-IVD-marked, NGS platform for in vitro diagnostic (IVD) testing. System offers both diagnostic and research modes.

Proper citation: Illumina: MiSeqDx System (RRID:SCR_016380) Copy   

•   Source: SciCrunch Registry

https://www.illumina.com/systems/sequencing-platforms/hiseq-x.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 15,2023. Sequencer for whole-genome sequencing. System consists of HiSeq X ultra-high-throughput instruments that deliver over 18,000 human genomes per year.

Proper citation: Illumina: HiSeq X (RRID:SCR_016385) Copy   

•   Source: SciCrunch Registry