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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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VisIt Resource Report Resource Website |
VisIt (RRID:SCR_024370) | software application, software resource | Open source software interactive, scalable, visualization, animation and analysis tool. Used to generate visualizations, animate them through time, manipulate them with variety of operators and mathematical expressions, and save resulting images and animations for presentations. | generate visualizations, animation, analysis, save resulting images and animations for presentations, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/visit/ | SCR_024370 | visit | 2026-09-05 06:33:17 | 0 | ||||||||
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Hunter NMR Spectroscopy Facility Resource Report Resource Website |
Hunter NMR Spectroscopy Facility (RRID:SCR_000883) | instrument supplier, material resource | A service facility with four main spectrometers. The facility consists of four NMR instruments: a JEOL GX-400, a Varian Inova 500, a Bruker Avance 500 equipped with a 13C-1H cryoprobe, and a Bruker Avance III 600 MHz spectrometer equipped with a cryoprobe. These spectrometers are utilized by scientists from Hunter College, as well as from the entire CUNY community. The large variety of available probes allows detection of virtually any MR-active nuclide. Data analysis is performed either at the spectrometer workstation with vendor software or off-line with third party software packages. | spectrometer, spectroscopy, analysis, cuny, nuclide, data analysis |
is listed by: Eagle I has parent organization: Hunter College; New York; USA |
nlx_156342 | http://hunter-cuny.eagle-i.net/i/00000136-79a2-306f-949b-425080000000 | SCR_000883 | 2026-09-05 06:33:20 | 0 | |||||||||
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Wyss Institute Imaging Core Resource Report Resource Website |
Wyss Institute Imaging Core (RRID:SCR_000898) | instrument supplier, material resource | A core facility with access to imaging equipment and analysis software such as wide-field light microscopy, Total Internal Reflection Fluorescence microscopy (TIRF), confocal microscopy, Atomic Force Microscopy (AFM), Transmission Electron Microscopy (TEM), small animal imaging, spectroscopy, and flow cytometry. | wide field light microscopy, total internal reflection fluorescence microscopy, tirf, confocal microscopy, atomic force microscopy, afm, transmission electron microscopy, tem, small animal imaging, spectroscopy, flow cytometry, imaging, analysis |
is listed by: Eagle I has parent organization: Harvard University; Cambridge; United States |
nlx_156690 | http://harvard.eagle-i.net/i/00000133-a87a-55d3-809a-235280000000 | SCR_000898 | 2026-09-05 06:33:20 | 0 | |||||||||
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Sequence Search and Alignment by Hashing Algorithm Resource Report Resource Website 1+ mentions |
Sequence Search and Alignment by Hashing Algorithm (RRID:SCR_000544) | SSAHA2 | software resource, source code | A program designed for the efficient mapping of sequence reads onto genomic references. The software is capable of reading most sequencing platforms and giving a range of outputs are supported. | sequence, genomic, analysis, search, alignment, algorithm, mapping, bio.tools |
is listed by: OMICtools is listed by: bio.tools is related to: SMALT has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11591649 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ssaha2, OMICS_00690, nlx_93831 | https://bio.tools/ssaha2 | SCR_000544 | ssaha2, ssaha, Sequence Search and Alignment by Hashing Algorithm | 2026-09-05 06:33:19 | 6 | |||||
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National Magnetic Resonance Facility at Madison Resource Report Resource Website 1+ mentions |
National Magnetic Resonance Facility at Madison (RRID:SCR_001449) | NMRFAM | access service resource, service resource, training resource | Provides access and developes NMR technology to advance range of applications and improves the efficiency, rigor and reproducibility of NMR data acquisition and analysis. Houses NMR spectrometers equipped with state-of-the-art probe technology and protocols to support acquisition of high-quality data. Spectrometers range from 500 MHz to 1100 MHz. Service is tailored to the needs of individual users and projects. Provides training and advice on experimental design, best practices for data acquisition, and data analysis. Experienced staff support users with training opportunities including workshops, video tutorials and protocols. | nmr spectrometer, structure, function, protein, rna, dynamics, complex, membrane protein, paramagnetic protein, metabolomics, analysis, spectroscopy, nucleic acid, automation, data analysis, macromolecule, small angle x-ray scattering, structural biology technology center | has parent organization: University of Wisconsin-Madison; Wisconsin; USA | NIGMS P41136463; NIGMS R24GM141526 |
Free, Freely Available | nlx_152672 | SCR_001449 | 2026-09-05 06:33:21 | 4 | |||||||
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ADInstruments - Data Acquisition Systems for Life Science Resource Report Resource Website 50+ mentions |
ADInstruments - Data Acquisition Systems for Life Science (RRID:SCR_001620) | instrument supplier, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 19, 2018; A provider of computer-based data acquisition and analysis systems for life science. Products enable users to record and analyze life science data quickly and efficiently. ADInstruments product range is based on the PowerLab data acquisition system with LabChart software. The PowerLab system (also MacLab) is used in universities, hospitals, research institutes, pharmaceutical companies, contract research organizations and other private industry research sectors. | acquisition, analysis, biomedical, computer, life science, research, education, pharmaceutical research, transducer, part, signal conditioner, system | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10146 | SCR_001620 | AD Instruments | 2026-09-05 06:33:22 | 68 | |||||||||
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Hunter Genomic Facility Resource Report Resource Website |
Hunter Genomic Facility (RRID:SCR_001983) | access service resource, core facility, service resource | Facility which provides instruments and instrument resources for analyzing DNA, RNA, protein, and radio-labeled substances. | genomics, dna, rna, protein, analysis, core facility |
is listed by: Eagle I has parent organization: Hunter College; New York; USA |
Instruction required, Fee | nlx_156341 | http://hunter-cuny.eagle-i.net/i/00000136-7e34-9f73-949b-425080000000 | SCR_001983 | 2026-09-05 06:33:22 | 0 | ||||||||
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National Resource for Network Biology Resource Report Resource Website 1+ mentions |
National Resource for Network Biology (RRID:SCR_004259) | NRNB | biomedical technology research center, training resource | Biomedical technology research center that develops new algorithms, visualizations and conceptual frameworks to study biological networks at multiple levels and scales, from protein-protein and genetic interactions to cell-cell communication and vast social networks. They are developing freely available, open-source suite of software technology that broadly enables network-based visualization, analysis, and biomedical discovery for NIH-funded researchers. This software is enabling researchers to assemble large-scale biological data into models of networks and pathways and to use these networks to better understand how biological systems operate under normal conditions and how they fail in disease. The National Resource for Network Biology is organized around the following key components: Technology Research and Development, Driving Biomedical Projects, Outreach, Training and Dissemination of Tools. The NRNB supports several types of training events, including both virtual and live workshops; tutorials sessions for clinicians, biologists and bioinformaticians; presentations and demonstrations at conferences; online tutorials and webcasts; and annual symposium. | protein-protein interaction, interaction, cell, cell communication, network, model, pathway, biological system, disease, visualization, analysis, biomedical, computing and informatics technology center | has parent organization: University of California at San Diego; California; USA | NIGMS GM103504; NCRR RR031228 |
nlx_27231 | SCR_004259 | 2026-09-05 06:33:25 | 6 | ||||||||
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NIH / NCRR Mass Spectrometry Resource Washington University in St. Louis Resource Report Resource Website 1+ mentions |
NIH / NCRR Mass Spectrometry Resource Washington University in St. Louis (RRID:SCR_009009) | Mass Spectrometry Resource, WU Mass Spectrometry Resource | biomedical technology research center, training resource | Biomedical technology research center that develops mass spectrometry-based tools for the study of proteins, lipids and metaboilites. These include biomarker identification, stable isotope mass spectrometry and the analysis of intact proteins. Our goals are: * to conduct basic research in the science of mass spectrometry * to establish collaborative research projects with scientists at WU and at other institutions * to provide a service in mass spectrometry * to educate and train students in mass spectrometry * to disseminate results of our research and descriptions of the subject of mass spectrometry | systems biology technology center, mass spectrometry, protein, lipid, metaboilite, biomarker, isotope, analysis | has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA | NIGMS ; NCRR 2P41RR00954 |
nlx_152688 | SCR_009009 | Mass Spectrometry Resource at Washington University in St. Louis, Washington University Mass Spectrometry Resource | 2026-09-05 06:33:30 | 1 | |||||||
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Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center Resource Report Resource Website |
Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center (RRID:SCR_009668) | BIDMC Genomics, Proteomics, Bioinformatics and Systems Biology Center | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27, 2023. Core provides services: RT PCR service, Gene expression profiling service, Proteomics analysis service, Bioinformatics and Systems Biology analyses, Next Generation Sequencing Service, Affymetrix Human and Mouse Gene 2.0 ST Arrays and 2.1 ST Arrayplates. Core proteomics facility for the Dana-Farber/Harvard Cancer Center. Workflows and algorithms for analysis of next-generation sequencing data including RNA-Seq, ChIP-Seq, Epigenetics-Seq and DNA seq, Comprehensive workflow for analysis of Microbiome sequencing data, Integrated systems biology analysis of transcriptome, miRNA, epigenome, metabolomics and proteomics data. Pipelines: MALDI Tissue imaging and targeted quantitative proteomics. | RT PCR, transcriptome, epigenome, metabolomics, profiling, assay, protein, expression, pathway, data, bioinformatics, analysis, next, generation, sequencing, human, mouse, array, tissue, imaging |
is listed by: Eagle I is related to: Beth Israel Deaconess Medical Center Labs and Facilities is related to: Harvard University Labs and Facilities has parent organization: Harvard University; Cambridge; Massachusetts |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156126 | http://www.bidmcgenomics.org/ | SCR_009668 | Beth Israel Deaconess Medical Center, BIDMC | 2026-09-05 06:33:30 | 0 | ||||||
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jMORP Resource Report Resource Website 100+ mentions |
jMORP (RRID:SCR_024755) | data or information resource, database | Japanese multi omics reference panel. Provides multidimensional approach to diversity of Japanese population. Public database for plasma metabolome and proteome analyses. Updated to metabolome, genome, transcriptome, metagenome, number of samples, analysis methods of each dataset, expanding links between each layer and links between hierarchies. | Japanese population, multi omics reference panel, plasma metabolome and proteome analyses, metabolome, genome, transcriptome, metagenome, datasets, samples, analysis, | Japan Agency for Medical Research and Development | DOI:10.1093/nar/gkad978 | Restricted | SCR_024755 | 2026-09-05 06:34:40 | 109 | |||||||||
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University of Pittsburgh Single Cell Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Single Cell Core Facility (RRID:SCR_025110) | access service resource, core facility, service resource | Core offers single cell sequencing. Provides analysis of transcriptomics, proteomics and epigenomics at single cell level. Provides comprehensive approach for cell characterization and gene expression profiling. Services include single cell gene expression, immune profiling, ATAC, and multiome analysis. | ABRF, single cell sequencing, analysis, transcriptomics, proteomics, epigenomics |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2669 | https://coremarketplace.org/?FacilityID=2669&citation=1 | SCR_025110 | University of Pittsburgh Single Cell Core | 2026-09-05 06:34:50 | 6 | ||||||||
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Incucyte Cell-By-Cell Analysis Software Module Resource Report Resource Website 1+ mentions |
Incucyte Cell-By-Cell Analysis Software Module (RRID:SCR_025367) | software application, software resource | Software for analysis to determine live versus dead cells – no fluorescent dyes needed. | determine live versus dead cells, no fluorescent dyes needed, analysis | Restricted | SCR_025367 | 2026-09-05 06:34:57 | 3 | |||||||||||
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Rhode Island INBRE Molecular Informatics Core Facility Resource Report Resource Website 10+ mentions |
Rhode Island INBRE Molecular Informatics Core Facility (RRID:SCR_017685) | access service resource, core facility, service resource | Core provides sequencing and bioinformatics support for INBRE and non-INBRE researchers. Provides data science services adjacent to traditional bioinformatics; access to computational and software resources for INBRE network institutions, particularly primarily undergraduate institutions; training for students and faculty in data science methods. Maintains professional network with other core and user facilities in Rhode Island and beyond to maximize resources available to our users.Utilizes novel technologies such as virtual/augmented reality for use in teaching and research. | Analysis, interpretation, nucleotide, amino acid, sequence, protein, domain, structure, service, 3D visualization, modeling, USEDit |
has parent organization: University of Rhode Island; Rhode Island; USA has parent organization: USEDit |
NIGMS P20 GM103430 | Open | ABRF_3 | SCR_017685 | Rhode Island INBRE Molecular Informatics, RI-INBRE Bioinformatics Core; RI Genomics and Sequencing Center | 2026-09-05 06:34:10 | 16 | |||||||
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Connecticut University Health Center Flow Cytometry Core Facility Resource Report Resource Website |
Connecticut University Health Center Flow Cytometry Core Facility (RRID:SCR_017698) | access service resource, core facility, service resource | Facility provides flow cytometric analysis and cell sorting services. Located on 6th floor of E building in room E6014, consists of lab space, complete with fume hood, centrifuge, and sink space and has instruments available for cellular analysis and cell sorters. | Flow, cytometry, analysis, cell, sorting, serivce, UConn, core | Open | ABRF_125, SCR_017717 | SCR_017698 | UConn Health Flow Cytometry Core | 2026-09-05 06:34:10 | 0 | |||||||||
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University of Texas MD Anderson Cancer Center Proteomics Core Facility Resource Report Resource Website |
University of Texas MD Anderson Cancer Center Proteomics Core Facility (RRID:SCR_017731) | access service resource, core facility, service resource | Facility provides mass spectrometry analysis of proteins. Provides access to mass spectrometry based proteomics technologies and services including Protein Identification, Molecular Weight Determination, Quantitative Protein Analysis, Post-translational Modification Analysis, LC or LC-MS Analysis, Equipment Usage, Additional Data Analysis:Bioinformatics, statistics, pathway analysis and Assistance preparing materials for manuscripts or grants.Consultations for custom assays for other MS Services are also available. | Mass, spectrometry, analysis, protein, proteomics, service | NCI P30 CA016672; NIH Office of the Director S10 OD012304 |
Open | ABRF_186 | SCR_017731 | Proteomics Facility | 2026-09-05 06:34:11 | 0 | ||||||||
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Maine Medical Center Research Institute Proteomics and Lipidomics Analysis Core Facility Resource Report Resource Website |
Maine Medical Center Research Institute Proteomics and Lipidomics Analysis Core Facility (RRID:SCR_017730) | access service resource, core facility, service resource | Core provides protein and small molecule structural and functional analysis, and quantitation using technologies and software applications. Services in Nano-liquid chromatography,Protein identification and quantitation using SWATH,Protein post translational modification identification,Lipid profiling and identification (MS/MSALL),Targeted multiple reaction monitoring (MRM) for lipids. | Protein, small, molecule, structural, functional, analysis, quantitation, nano, liquid, chromatography, lipid, SWATH | Vascular Biology Center of Biomedical Research Excellence (COBRE) Program | Restricted | ABRF_170 | SCR_017730 | MMRC Proteomics and Lipidomics Analysis | 2026-09-05 06:34:11 | 0 | ||||||||
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Albany University RNA Epitranscriptomics and Proteomics Resource Core Facility Resource Report Resource Website |
Albany University RNA Epitranscriptomics and Proteomics Resource Core Facility (RRID:SCR_017695) | REPR | access service resource, core facility, service resource | Resource offers range of mass spectrometry instrumentation, expertise in analysis of RNA, RNA modifications, and proteins involved in RNA metabolism/regulation, supports projects involving analysis of biomolecules, metabolites, and small synthetic molecules, provides consulting on experimental design, sample preparation and data interpretation, whole project development and grant writing contributions. | Mass, spectrometry, instrument, analysis, RNA, protein, biomolecule, data, grant, project, service, core | Open | ABRF_113, SCR_017715 | SCR_017695 | RNA Epitranscriptomics and Proteomics Resources | 2026-09-05 06:34:10 | 0 | ||||||||
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Beth Israel Deaconess Medical Center Mass Spectrometry Core Facility Resource Report Resource Website 1+ mentions |
Beth Israel Deaconess Medical Center Mass Spectrometry Core Facility (RRID:SCR_017735) | access service resource, core facility, service resource | Provides servies in mass spectrometry, proteomics, metabolomics and lipidomics. Services include Thermo Orbitrap Elite and Thermo QExactive HF Orbitrap microcapillary LC-MS/MS:Protein identification, Post-translational modification site mapping,Relative quantification: Label-free, SILAC, TMT, etc.;AB/SCIEX 5500 QTRAP LC-MS/MS:Polar metabolomics profiling,13C/15N metabolic flux analysis;Thermo QExactive Plus/HF Orbitrap LC-MS/MS:Untargeted Lipidomics profiling, Untargeted Metabolomics Profiling. | Protein identification, post translational, modification, site, mapping, quantification, polar, metabolomic, profiling, metabolic, flux, analysis, untargeted, lipidomics, metabolomic, profiling, service, cores |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
Open | ABRF_193 | https://coremarketplace.org/?FacilityID=193&citation=1 | SCR_017735 | BIDMC Mass Spectrometry | 2026-09-05 06:34:11 | 3 | |||||||
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Idaho University IBEST Computational Resources Core Facility Resource Report Resource Website |
Idaho University IBEST Computational Resources Core Facility (RRID:SCR_017734) | CRC | access service resource, core facility, service resource | Provides evolutionary and computational biology investigators with computing and large data storage capacity for use in analyzing and managing large volumes of research data. Core contains advanced mix of high performance computing clusters, servers and data storage components, knowledge and technical skills required to compress years of analysis into days. | Evolutionary, computational, biology, data, storage, analysis, service, core | Restricted | ABRF_188 | SCR_017734 | IBEST Computational Resources Core | 2026-09-05 06:34:11 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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