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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Thermo Fisher: Life Technologies: Countess Automated Cell Counter Resource Report Resource Website 1+ mentions |
Thermo Fisher: Life Technologies: Countess Automated Cell Counter (RRID:SCR_018591) | instrument resource | Invitrogen benchtop automated cell counter. Can perform cell counts, viability calculations, hemocytometry, fluorescent protein expression, and measure fluorescence capabilities. There are also reusable slides, fluorescence capabilities, and brightfield fluorescence channels. | Automated cell counter, cell counter, instrument, equipment, USEDit, Life Technologies | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_020236.pdf | SCR_020236 | SCR_020236, https://assets.thermofisher.com/TFS-Assets/BID/manuals/MAN0014293_Countess_II_Automated_Cell_Counter_UG.pdf | SCR_018591 | 2026-09-05 06:28:39 | 7 | |||||||
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rSPRITE Resource Report Resource Website |
rSPRITE (RRID:SCR_018524) | data access protocol, service resource, software resource, web service | Web app to generate possible distributions of data matching given mean, SD, sample size, and range. Used for recovering data from summary statistics. Implementation of SPRITE in R programming environment. | data distribution generation, data matching, recovering data, summary statistics data, ASWG |
is related to: Shiny is related to: RStudio |
Free, Freely available | SCR_018524 | rSPRITE beta 0.15, SPRITE, Sample Parameter Reconstruction via Iterative TEchniques | 2026-09-05 06:28:37 | 0 | |||||||||
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Conserved Domains Search Resource Report Resource Website 1000+ mentions |
Conserved Domains Search (RRID:SCR_018729) | data access protocol, data or information resource, service resource, software resource, web service | Web tool for conserved domains searching within protein or coding nucleotide sequence. | Conserved domain, protein, coding nucleotide sequence, domain search, domain, nucleotide sequence | works with: Conserved Domain Database | Free, Freely available | SCR_018729 | CD-search | 2026-09-05 06:28:41 | 2002 | |||||||||
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Nikon: SMZ1500 Zoom Stereoscope Resource Report Resource Website |
Nikon: SMZ1500 Zoom Stereoscope (RRID:SCR_018605) | instrument resource | SMZ1500 stereoscopic zoom microscope is system with apochromatic objectives, zoom ratio of 15 to 1, range of magnifications from 0.75x to 11.25x for total magnifying capability of 3.75x up to 540x, and is best for in depth imaging.Zoom knob allows to zoom from 1x to 11x at 1x-intervals without interrupting observations. Other facets include high eyepoint eyepieces with built-in diopter adjustments, wide field of view, and built-in aperture diaphragm for achieving optimal depth of focus and improved photomicrography.Provides options of either low eye-level viewing tube or tilting eyepiece tube, with or without eye-level risers. Three different diascopic stands with built-in power supplies may also be utilized with instrument, or standard stand that features low profile for increased clearance. | Fluorescence Dissection Microscope, Instrument, Equipment, Nikon, USEDit, ABRF | Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018605.pdf | Model_Number_SMZ1500, SCR_020314, SCR_020327 | https://www.coherent.com.au/content/media/Nikon/SMZ1500.pdf | SCR_018605 | Nikon 1500 Fluorescence Dissection Microscope | 2026-09-05 06:28:39 | 0 | |||||||
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Graph2GO Resource Report Resource Website 1+ mentions |
Graph2GO (RRID:SCR_018726) | data analysis software, data processing software, software application, software resource | Software tool as graph based representation learning method for protein function prediction. Multi modal graph based representation learning model that can integrate heterogeneous information including multiple types of interaction networks including sequence similarity network and protein-protein interaction network, and protein features including amino acid sequence, sub cellular location and protein domains, to predict protein functions on Gene Ontology. | Protein function prediction, graph neural network, attributed network embedding, representation learning, multi-modal model, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Ohio State University College of Medicine; Ohio; USA |
Free, Available for download, Freely available | SCR_018727, biotools:graph2go | https://integrativeomics.shinyapps.io/graph2go/, https://bio.tools/graph2go | SCR_018726 | 2026-09-05 06:28:41 | 2 | ||||||||
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Packard: Cobra 5000 Gamma Counter Resource Report Resource Website 1+ mentions |
Packard: Cobra 5000 Gamma Counter (RRID:SCR_018609) | instrument resource | Gamma counter available in single, five, or ten detector configurations. Can count RIA tubes, 16x100mm and variety of smaller micro tubes using available adapter.This instrument has dot Matrix Printer, tube racks, and protocol ID tags.Single detector model is available in 2 inch or 3 inch crystal configurations for research grade capabilities. | Gamma Counter, Instrument, Equipment, USEDit, Packard Cobra, ABRF | is listed by: USEDit | Commercially available | Model_Number_Packard_Cobra_5000, SCR_020391 | SCR_018609 | 2026-09-05 06:28:39 | 2 | |||||||||
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Stanford Shimadzu 8030 LC/MS mass spectrometer Resource Report Resource Website |
Stanford Shimadzu 8030 LC/MS mass spectrometer (RRID:SCR_018699) | instrument resource | Shimadzu 8030 triple quadrupole mass spectrometer used for targeted quantitation applications. Listed by Stanford University Mass Spectrometry Vincent Coates Foundation Instruments. | Liquid chromatography mass spectrometry, Shimadzu 8030, triple quadrupole mass spectrometer, targeted quantitation, instrument, equipment, USEDit | is used by: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018699.pdf | Model_Number_Shimadzu_LCMS-8030 | https://industry.pharmaceutical-tech.com/suppliers/shimadzu-asia-pacific-pte-ltd/products/1611295961-liquid-chromatograph-mass-spectrometer.pdf | SCR_018699 | Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core FacilityLC/MS | 2026-09-05 06:28:41 | 0 | |||||||
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Promega: TBS-380 Fluorimeter Resource Report Resource Website |
Promega: TBS-380 Fluorimeter (RRID:SCR_018615) | instrument resource | Dual channel fluorimeter for fluorescence measurements when calibrated with known concentration to measure compounds at low concentration with low assay volume. | Fluorometer, Instrument, Equipment, USEDit, ABRF, Promega | is listed by: USEDit | Model_Number_TBS_380 | https://www.promega.com/-/media/files/products-and-services/instruments/detection/tbs-technical-support-docs/tbs380-manual.pdf?la=en | SCR_018615 | 2026-09-05 06:28:39 | 0 | |||||||||
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Promega: GloMax 96 Microplate Luminometer Resource Report Resource Website 1+ mentions |
Promega: GloMax 96 Microplate Luminometer (RRID:SCR_018614) | instrument resource | Microplate luminometer that features two optional injectors and reads both glow- and flash-luminescent reactions in 96-well plates. The sensitivity and range enable a wide range of luminescent assays, including Promega bioluminescent reporter, cell-based and biochemical assays., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Microplate Luminometer, Instrument, Equipment, Luminometer, USEDit, Promega, ABRF | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_019964.pdf | SCR_019964, Model_Number_GloMax_96 | https://www.promega.com/-/media/files/resources/protocols/technical-manuals/0/glomax-96-microplate-luminometer-protocol.pdf | SCR_018614 | GloMax 96 Microplate Luminometer | 2026-09-05 06:28:39 | 4 | |||||||
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iMol Resource Report Resource Website 1+ mentions |
iMol (RRID:SCR_018735) | data processing software, data visualization software, software application, software resource | Software molecular visualization application for Mac OS X operating system. Tool for chemists and molecular biologists used for handling small and large molecules, loading multiple molecules, moving and rotating them independently, or displaying molecular dynamics trajectory. Allows loading molecules using file formats: PDB, XYZ, MOL2, HIN, CAR, ALC, BIO. | Molecular visualization, Mac OS X operating system, molecule, loading molecule, moving molecule, rotating molecule, displaying dynamics trajectory | Free, Available for download, Freely available | SCR_018735 | 2026-09-05 06:28:41 | 1 | |||||||||||
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BioSimulations Resource Report Resource Website 1+ mentions |
BioSimulations (RRID:SCR_018733) | software resource, web application | Web tool for sharing and re-using biomodels, simulations, and visualizations of simulations results. Supports variety of modeling frameworks including kinetic, constraint based, and logical modeling, model formats including BNGL, CellML, SBML, and simulation tools including COPASI, libRoadRunner/tellurium, NFSim, VCell. | Sharing, reusing, biomodel, simulation, visualization, simulation result, modeling framework support, simulation tool support, model format support, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA has parent organization: University of Connecticut; Connecticut; USA |
NIBIB P41 EB023912; NIGMS ; NSF |
Restricted | biotools:biosimulations | https://bio.tools/biosimulations | SCR_018733 | 2026-09-05 06:28:41 | 1 | |||||||
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Agilent: 7890/5975 GC/MS system Resource Report Resource Website 1+ mentions |
Agilent: 7890/5975 GC/MS system (RRID:SCR_018695) | instrument resource | Agilent GC/MS is single quadrupole instrument with electron ionization. GC/MS runs under ChemStation open access software, and trained open access users select from menu of standard methods to analyze their samples. | Agilent GC/MS, quadrupole instrument, electron ionization, ChemStation software, sample analyzer, instrument, equipment, USEDit | is used by: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018695.pdf | https://www.agilent.com/cs/library/usermanuals/public/G3170-90036.pdf | SCR_018695 | Agilent 7890/5975 GC/MS | 2026-09-05 06:28:41 | 1 | ||||||||
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piNET Resource Report Resource Website 1+ mentions |
piNET (RRID:SCR_018693) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web platform for downstream analysis and visualization of proteomics data. Server that facilitates integrated annotation, analysis and visualization of quantitative proteomics data, with emphasis on PTM networks and integration with LINCS library of chemical and genetic perturbation signatures in order to provide further mechanistic and functional insights. Primary input for server consists of set of peptides or proteins, optionally with PTM sites, and their corresponding abundance values. | Analysis, visualization, proteomics data, integrated annotation, quantitative proteomics data, PTM network, LINCS library integration, genetic perturbation signature, peptide, protein, post translational modification site, PTM site, data | is related to: LINCS Project | NCATS UL1 TR001425; NCI T32 CA236764; NHLBI U54 HL127624; NIEHS P30 ES006096; NIGMS U01 GM120953; NIMH R01 MH107487 |
DOI:10.1093/nar/gkaa436 | Free, Freely available | SCR_018693 | 2026-09-05 06:28:41 | 4 | ||||||||
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Qiagen: PyroMark Q96 System Resource Report Resource Website 10+ mentions |
Qiagen: PyroMark Q96 System (RRID:SCR_018617) | instrument resource | Sequencing and quantification platform for epigenetics, mutation gene expression analysis, and microbial identification and resistance typing. With its 96-well format, automatic base-calling function, and dedicated software solutions for methylation analysis and assay design. | Pyrosequencer, Instrument, Equipment, Qiagen, USEDit, ABRF | is listed by: USEDit | SCR_020413, Model_Number_Q96 | SCR_018617 | 2026-09-05 06:28:39 | 11 | ||||||||||
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Rigaku: Alchemist II Liquid Handler Resource Report Resource Website |
Rigaku: Alchemist II Liquid Handler (RRID:SCR_018625) | instrument resource | Liquid handling system for production of complex liquid formulations produced from individual stock solutions of various chemical and liquid properties. With a CV of less than 2%. | Rigaku, Liquid Handler, Instrument Equipment, USEDit | is listed by: USEDit | SCR_019564, Model_Number_Alchemist_II | SCR_018625 | 2026-09-05 06:28:40 | 0 | ||||||||||
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rVista Resource Report Resource Website 10+ mentions |
rVista (RRID:SCR_018707) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool for analyzing regulatory potential of noncoding sequences. rVISTA web server is interconnected with TRANSFAC database, allowing users to either search for matrices present in TRANSFAC library collection or search for user defined consensus sequences. rVISTA 2.0 web server is used for high throughput discovery of cis-regulatory elements. Can process alignments generated by zPicture and blastz alignment programs or use pre-computed pairwise alignments of several vertebrate genomes available from ECR Browser and GALA database. Evolutionary analysis of transcription factor binding sites. | Noncoding sequence, regulatory potential analysis, matrices search, TRANSFAC library collection, cis regulatory element, process alignment, zPicture, blastz, pairwise alignment, genome, analysis, transcription factor binding site, bio.tools |
is listed by: Debian is listed by: bio.tools works with: TRANSFAC |
PMID:15215384 | Free, Freely available | biotools:rvista | https://bio.tools/rvista | SCR_018707 | rVista 2.0 | 2026-09-05 06:28:41 | 34 | ||||||
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FunCoup Resource Report Resource Website 1+ mentions |
FunCoup (RRID:SCR_018711) | data access protocol, data or information resource, database, service resource, software resource, web service | Database of genome wide functional coupling networks. Provides tools to explore predicted networks and to retrieve detailed information about data underlying each prediction. Web service for functional coupling search. | Genome, genome functional coupling network, coupling network, functional coupling, functional couplings search, gene identifier, genome data | has parent organization: Karolinska Institute; Stockholm; Sweden | Stockholm University ; Swedish Research Council |
PMID:24185702 | Free, Freely available | SCR_018711 | 2026-09-05 06:28:41 | 3 | ||||||||
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NGScloud2 Resource Report Resource Website 1+ mentions |
NGScloud2 (RRID:SCR_018716) | data analysis software, data processing software, software application, software resource | Software tool for RNA-seq analysis of non model species using cloud computing. Provides user friendly front end to operate Amazon hardware resources and to control workflows of bioinformatic analysis of de novo RNA-seq, reference-based RNA-seq and functional annotation specifically oriented to plant species. | RNAseq analysis, non model species, cloud computing, AWS, spot instances, RNAseq, RADseq, functional annotation, plant | Amazon Research Grant ; Spanish Ministry of Economy and Competitiveness ; Spanish National Parks Agency Ministry of Agriculture |
PMID:29726914 | Free, Available for download, Freely available | https://github.com/GGFHF/NGScloud/ | SCR_018716 | NGScloud | 2026-09-05 06:28:41 | 1 | |||||||
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Thermo Fisher: GeneAtlas System Resource Report Resource Website 1+ mentions |
Thermo Fisher: GeneAtlas System (RRID:SCR_018715) | instrument resource | System for processing Affymetrix microarrays. Microarray analysis system. Includes array strip and hybridization assembly, Fluidics station, Imaging station. | ABRF, Affymetrix, instrument, Thermo Fisher Scientific, Affymetrix Gene Atlas Fluidics Station, Affymetrix HuGene, Geneatlas system, imaging station, equipment |
is listed by: USEDit works with: Affymetrix Transcriptome Analysis Console Software works with: Affymetrix Transcriptome Analysis Console Software |
https://assets.thermofisher.com/TFS-Assets/LSG/brochures/geneatlas_system_brochure.pdf | SCR_018715 | GeneAtlas System, Affymetrix GeneAtlas System | 2026-09-05 06:28:41 | 1 | |||||||||
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Thermo Fisher: NanoDrop 8000 Spectrophotometer Resource Report Resource Website 1+ mentions |
Thermo Fisher: NanoDrop 8000 Spectrophotometer (RRID:SCR_018600) | instrument resource | Microvolume UV Vis spectrophotometer for nucleic acid and protein quantification that can measure multiple samples using 1 to 2 uL of samples. Can analyze spectrum of 220nm to 750nm and measure 96 samples in less than six minutes. Can measure multiple samples in one measurement cycle, up to eight samples at one time. Has single sample mode. Can analyze the full spectrum from 220 to 750nm and calculates sample purity ratios 260/280. | Spectrophotometer, Instrument, Equipment, Nanodrop, USEDit, ABRF |
is listed by: USEDit is related to: Thermo Fisher: NanoDrop Lite Spectrophotometer |
Commercially available | Model_Number_NanoDrop_8000, SCR_020315 | https://afns-labs.ualberta.ca/wp-content/uploads/sites/58/2018/05/Nanodrop-ND-8000-brochure.pdf.pdf | SCR_018600 | 2026-09-05 06:28:39 | 7 |
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