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http://www.citisletstudy.org/

Network of clinical centers and a data coordinating center established to conduct studies of islet transplantation in patients with type 1 diabetes.

Proper citation: Clinical Islet Transplantation Consortium (CITC) (RRID:SCR_014385) Copy   

•   Source: SciCrunch Registry

https://www.beckmancoulter.com/wsrportal/wsrportal.portal?_nfpb=true&_windowLabel=UCM_RENDERER&_urlType=render&wlpUCM_RENDERER_path=%252Fwsr%252Fdiagnostics%252Fclinical-products%252Fflow-cytometry%252Fflow-cytometers%252Fnavios%252Findex.htm#2/10//0/25/1/0/asc/2/775213///0/1//0/%2Fwsrportal%2Fwsr%2Fdiagnostics%2Fclinical-products%2Fflow-cytometry%2Fflow-cytometers%2Fnavios%2Findex.htm/

Used in tandem with the Navios Flow Cytometer in order to acquire data for use in analyzing cellular characteristics.

Proper citation: Navios Software (RRID:SCR_014421) Copy   

•   Source: SciCrunch Registry

https://www.bdbiosciences.com/us/instruments/research/cell-analyzers/bd-accuri/m/1294932/features/software

Software used for collecting and analyzing flow cytometry data. Files can be exported in FCS 3.1 format for import into other flow cytometry analysis programs such as FCS Express™ software and FlowJo™ software.

Proper citation: BD Accuri C6 Plus (RRID:SCR_014422) Copy   

•   Source: SciCrunch Registry

https://rise.bsc.gwu.edu/web/rise/home?p_p_id=58&p_p_lifecycle=0&_58_redirect=%2F

Consortium which includes 3 studies, each assessing the hypothesis that aggressive glucose lowering will lead to recovery of beta-cell function that will be sustained after treatment in those with prediabetes and early type 2 diabetes.

Proper citation: Restoring Insulin Secretion Consortium (RISE) (RRID:SCR_014383) Copy   

•   Source: SciCrunch Registry

http://msstats.org/

A package for statistical relative quantification of proteins and peptides in global, targeted, and data-independent proteomics. It handles shotgun, label-free, and label-based Selected Reaction Monitoring, as well as SWATH/DIA (Data Independent Acquisition) experiments. MSStats provide functionality for data processing and visualization, model-based statistical analysis, and model-based sample size calculations.

Proper citation: MSstats (RRID:SCR_014353) Copy   

•   Source: SciCrunch Registry

https://simthyr.sourceforge.io

Open source simulation software for thyroid homeostasis, based on published nonlinear model of pituitary thyroid feedback control. Simulates pituitary thyroid feedback control, which allows users to study relationship between structure and behaviour of thyroid homeostasis.

Proper citation: SimThyr (RRID:SCR_014351) Copy   

•   Source: SciCrunch Registry

http://cyberunits.sourceforge.net/

A cross-platform class library for development of high-performance life science computer simulations. It supports modelling for biomedical cybernetics and systems biology with Object Pascal. It contains a set of Pascal units for rapid programming of high-performance computer simulations called the Brick collection.

Proper citation: CyberUnits (RRID:SCR_014358) Copy   

•   Source: SciCrunch Registry

https://vdjserver.org/

A web application immune repertoire management, analysis, and archiving. Users can collaborate and share data either privately or publicly. Users can perform a variety of tasks, such as create and share projects with other users, conduct pre-processing tasks on single end reads, run IgBlast, and obtain basic repertoire characterization results for B cell receptor and T cell receptor repertoires.

Proper citation: VDJ Server (RRID:SCR_014356) Copy   

•   Source: SciCrunch Registry

https://cfn.upenn.edu/~zewang/BENtbx.php

A toolkit for mapping brain entropy using fMRI. It uses several functions from ASLtbx. At its core, the toolkit is a collection of batch scripts that implement a pipeline for processing fMRI data in order to get Sample entropy for each voxel.

Proper citation: Brain Entropy Mapping Toolbox (RRID:SCR_014470) Copy   

•   Source: SciCrunch Registry

http://technologies.kmi.open.ac.uk/rexplore/

An application which provides an environment to explore and organize scholarly data. Rexplore leverages solutions in large-scale data mining, semantic technologies and visual analytics, which allows users to detect and follow research trends, identify and map relationships between authors, perform expert searches, and analyze research performance.

Proper citation: Rexplore (RRID:SCR_014364) Copy   

•   Source: SciCrunch Registry

http://www6.appliedbiosystems.com/support/software/copycaller/CopyCallerUserGuide.pdf

A software for analyzing real-time PCR data and quantifying DNA targets. It can perform copy number analysis, report confidence in copy number, display data in table and graphic format, change analysis parameters, and view data analysis information for multiple experiments at once.

Proper citation: CopyCaller (RRID:SCR_014486) Copy   

•   Source: SciCrunch Registry

https://www.minitab.com/en-us/products/minitab/

A statistical software package that allows the user to import data, create graphs, and perform statistical analysis. It can perform basic statistical tests like descriptive statistics, hypothesis tests, confidence intervals, and normality tests as well as regression and ANOVA and quality assessment.

Proper citation: Minitab (RRID:SCR_014483) Copy   

•   Source: SciCrunch Registry

http://surfer.nmr.mgh.harvard.edu/optseq/

Software tool for automatically scheduling events for rapid-presentation event-related (RPER) fMRI experiments (the schedule is the order and timing of events). Events in RPER are presented closely enough in time that their hemodynamic responses will overlap. This requires that the onset times of the events be jittered in order to remove the overlap from the estimate of the hemodynamic response. RPER is highly resistant to habituation, expectation, and set because the subject does not know when the next stimulus will appear or which stimulus type it will be.

Proper citation: Optseq (RRID:SCR_014363) Copy   

•   Source: SciCrunch Registry

http://www.evolution.rdg.ac.uk/BayesTraits.html

A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available. It incorporates earlier programs including Multistate, Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt a discrete number of states, or to the analysis of continuously varying traits. Hypotheses can be tested about models of evolution, ancestral states and correlations among pairs of traits., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: BayesTraits (RRID:SCR_014487) Copy   

•   Source: SciCrunch Registry

http://www.freepascal.org

Free Pascal is a 32, 64 and 16 bit professional Object Pascal compiler targeting multiple processor architectures and operating systems. Documentation, including guides and manuals, are available on the website.

Proper citation: Free Pascal Compiler (RRID:SCR_014360) Copy   

•   Source: SciCrunch Registry

http://aleasol.ch/cms/index.php/clickjoint.en.html

A software for analyzing animal movement on videos and images. The user can define the animal's joints so the software can analyze using a tracking algorithm.

Proper citation: Clickjoint (RRID:SCR_014482) Copy   

•   Source: SciCrunch Registry

Ratings or validation data are available for this resource

https://www.nikoninstruments.com/Products/Software

Microscope imaging software suite used with Nikon products. NIS-Elements includes software applications for advanced and standard research, documentation, confocal microscopy, and high-content analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: NIS-Elements (RRID:SCR_014329) Copy   

•   Source: SciCrunch Registry

https://www.imagescience.de/imagic.html

An image analysis software that can process spectra and other multi-dimensional data-sets. The software package is aimed at processing large data sets from (cryo-) electron microscopy, especially in the field of single particle analyses. This software can be used with light and raster-tunneling microscopes, computer tomographs, FT-IR spectrometers and other signal collecting devices. This resource provides three-dimensional data processing and angular reconstitution modules that allow the three-dimensional reconstruction with point-group symmetry from the two dimensional electron microscopy projections. These models aid in the analysis of the macromolecules.

Proper citation: IMAGIC (RRID:SCR_014447) Copy   

•   Source: SciCrunch Registry

http://www.amtimaging.com/www11/english/product_e.html

AMT camera system software that performs digital image acquisition, processing, and storage. An operations manual and software specifications are available on the main site.

Proper citation: AMT Image Capture Software (RRID:SCR_014333) Copy   

•   Source: SciCrunch Registry

http://www.macrogen.com/

A company that provides a variety of next generation sequencing services. The company provides researchers with whole genome resequencing, exome sequencing, targeted sequencing, transcriptomics, and epigenome sequencing.

Proper citation: Macrogen (RRID:SCR_014454) Copy   

•   Source: SciCrunch Registry