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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Worldwide Protein Data Bank (wwPDB) Resource Report Resource Website 1000+ mentions |
Worldwide Protein Data Bank (wwPDB) (RRID:SCR_006555) | wwPDB | data or information resource, database | Public global Protein Data Bank archive of macromolecular structural data overseen by organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). This site provides information about services provided by individual member organizations and about projects undertaken by wwPDB. Data available via websites of its member organizations. | 3-dimentional, bioinformatics, protein, research, structure, macromolecule, structural data, 3d spatial image, gold standard |
is used by: Ligand Expo is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Proteopedia - Life in 3D is related to: NRG-CING is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: DNA DataBank of Japan (DDBJ) is related to: PDBe - Protein Data Bank in Europe is related to: PDBe - Protein Data Bank in Europe is related to: PDBj - Protein Data Bank Japan is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: PDB Validation Server is related to: Structural Antibody Database is parent organization of: PDB-Dev works with: PDB-REDO |
BBSRC ; DOE ; European Molecular Biology Laboratory ; European Union ; Heidelberg; Germany ; Japan Science and Technology Agency ; NBDC - National Bioscience Database Center ; NCI ; NIDDK ; NIGMS ; NIH ; NINDS ; NLM ; NSF ; Wellcome Trust |
PMID:14634627 | Free, Freely available | nif-0000-23903, r3d100011104 | https://doi.org/10.17616/R3462V | SCR_006555 | SciCrunch Registry | World Wide Protein DataBank, wwPDB, Worldwide Protein Data Bank (wwPDB), World Wide Protein Data Bank, Worldwide Protein DataBank | 2026-09-26 02:18:30 | 1340 | ||||
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Mouse Genome Informatics (MGI) Resource Report Resource Website 1000+ mentions |
Mouse Genome Informatics (MGI) (RRID:SCR_006460) | MGI | data or information resource, database | International database for laboratory mouse. Data offered by The Jackson Laboratory includes information on integrated genetic, genomic, and biological data. MGI creates and maintains integrated representation of mouse genetic, genomic, expression, and phenotype data and develops reference data set and consensus data views, synthesizes comparative genomic data between mouse and other mammals, maintains set of links and collaborations with other bioinformatics resources, develops and supports analysis and data submission tools, and provides technical support for database users. Projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, and MouseCyc Project at MGI. | RIN, Resource Information Network, molecular neuroanatomy resource, human health, human disease, animal model, gene expression, phenotype, genotype, gene, pathway, orthology, tumor, strain, single nucleotide polymorphism, recombinase, function, blast, image, pathology, model, data analysis service, genome, genetics, gold standard, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is used by: Cytokine Registry is used by: NIH Heal Project is recommended by: Resource Identification Portal is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is listed by: NIH Data Sharing Repositories is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: MONARCH Initiative is related to: MouseCyc is related to: AmiGO is related to: Gene Expression Database is related to: Bgee: dataBase for Gene Expression Evolution is related to: HomoloGene is related to: Rat Gene Symbol Tracker is related to: Enhancer Trap Line Browser is related to: Integrated Brain Gene Expression is related to: MalaCards is related to: Gene Ontology is related to: BioMart Project is related to: NIH Data Sharing Repositories is related to: RIKEN integrated database of mammals is related to: JAX Neuroscience Mutagenesis Facility is related to: PhenoGO is related to: International Mouse Strain Resource is related to: Mouse Genome Database is related to: Mouse Tumor Biology Database has parent organization: Jackson Laboratory is parent organization of: Anatomy of the Laboratory Mouse is parent organization of: Mouse Genome Informatics Transgenes is parent organization of: Federation of International Mouse Resources is parent organization of: MGI GO Browser is parent organization of: Recombinase (cre) Activity is parent organization of: Mouse Genome Informatics: The Mouse Gene Expression Information Resource Project is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource is parent organization of: MGI strains is parent organization of: MPO is parent organization of: Phenotypes and Mutant Alleles is parent organization of: Human Mouse Disease Connection is parent organization of: Functional Annotation is parent organization of: Strains, SNPs and Polymorphisms is parent organization of: Vertebrate Homology is parent organization of: Batch Data and Analysis Tool is parent organization of: Nomenclature |
NCI CA089713; NHGRI HG000330; NHGRI HG002273; NICHD HD033745 |
PMID:19274630 PMID:18428715 |
Free, Freely available | nif-0000-00096, OMICS_01656, r3d100010266 | http://www.informatics.jax.org/batch, http://www.informatics.jax.org/submit.shtml, http://www.informatics.jax.org/expression.shtml, https://doi.org/10.17616/R35P54 | SCR_006460 | SciCrunch Registry | , MGI, Mouse Genome Informatics | 2026-09-26 02:18:29 | 1220 | ||||
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UniProt Resource Report Resource Website 10000+ mentions |
UniProt (RRID:SCR_002380) | UniProt | data or information resource, database | Collection of data of protein sequence and functional information. Resource for protein sequence and annotation data. Consortium for preservation of the UniProt databases: UniProt Knowledgebase (UniProtKB), UniProt Reference Clusters (UniRef), and UniProt Archive (UniParc), UniProt Proteomes. Collaboration between European Bioinformatics Institute (EMBL-EBI), SIB Swiss Institute of Bioinformatics and Protein Information Resource. Swiss-Prot is a curated subset of UniProtKB. | collection, protein, sequence, annotation, data, functional, information |
is used by: LIPID MAPS Proteome Database is used by: ChannelPedia is used by: Open PHACTS is used by: DisGeNET is used by: Smart Dictionary Lookup is used by: MitoMiner is used by: Cytokine Registry is used by: MobiDB is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: Phospho.ELM is used by: GEROprotectors is used by: SwissLipids is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: LabWorm is related to: Clustal W2 is related to: UniProt DAS is related to: UniParc at the EBI is related to: ProDom is related to: LegumeIP is related to: Pathway Commons is related to: NIH Data Sharing Repositories is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: 3D-Interologs is related to: Biomine is related to: EBIMed is related to: STOP is related to: Coremine Medical is related to: BioExtract is related to: STRAP is related to: GOTaxExplorer is related to: GoAnnotator is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures is related to: Whatizit is related to: MOPED - Model Organism Protein Expression Database is related to: Polbase is related to: PredictSNP is related to: PSICQUIC Registry is related to: IntAct is related to: p300db is related to: UniProt Proteomes is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation has parent organization: European Bioinformatics Institute has parent organization: SIB Swiss Institute of Bioinformatics has parent organization: Protein Information Resource is parent organization of: UniProtKB is parent organization of: NEWT is parent organization of: UniParc is parent organization of: UniProt Chordata protein annotation program is parent organization of: UniRef works with: Genotate works with: CellPhoneDB works with: MOLEonline works with: MiMeDB |
ARUK ; British Heart Foundation ; EMBL ; NCI ; NCRR P20 RR016472; NEI ; NHGRI P41 HG02273; NHGRI U24 HG007722; NHGRI U41 HG006104; NHLBI ; NIAID ; NIA ; NIDDK ; NIGMS 5R01GM080646; NIGMS R01 GM080646; NIMH ; NLM G08 LM010720; NSF DBI-0850319; PDUK |
PMID:19843607 PMID:18836194 PMID:18045787 PMID:17142230 PMID:16381842 PMID:15608167 PMID:14681372 |
nif-0000-00377, SCR_018750, r3d100010357 | http://www.ebi.uniprot.org, http://www.uniprot.org/uniprot/, http://www.pir.uniprot.org, ftp://ftp.uniprot.org, https://doi.org/10.17616/R3BW2M | SCR_002380 | SciCrunch Registry | , The Universal Protein Resource, Universal Protein Resource, UNIPROT Universal Protein Resource | 2026-09-26 02:18:14 | 19823 | |||||
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Gene Expression Omnibus (GEO) Resource Report Resource Website 10000+ mentions |
Gene Expression Omnibus (GEO) (RRID:SCR_005012) | GEO | data or information resource, data repository, database, service resource, storage service resource | Functional genomics data repository supporting MIAME-compliant data submissions. Includes microarray-based experiments measuring the abundance of mRNA, genomic DNA, and protein molecules, as well as non-array-based technologies such as serial analysis of gene expression (SAGE) and mass spectrometry proteomic technology. Array- and sequence-based data are accepted. Collection of curated gene expression DataSets, as well as original Series and Platform records. The database can be searched using keywords, organism, DataSet type and authors. DataSet records contain additional resources including cluster tools and differential expression queries. | gold standard, genomics, data, repository, microarray, mRNA, DNA, protein, analysis, SAGE, mass spectrometry, dataset |
is used by: ChIPseeker is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Allen Institute for Brain Science has parent organization: NCBI works with: shinyGEO works with: Drug Gene Budger works with: Signaling Pathways Project works with: GEN3VA |
National Library of Medicine | PMID:23193258 PMID:21097893 PMID:18940857 PMID:17160034 PMID:17099226 PMID:16939800 PMID:16888359 PMID:15608262 PMID:11752295 |
r3d100010283, nif-0000-00142, OMICS_01030, nlx_96903, SCR_007303 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=gds, http://www.ncbi.nlm.nih.gov/geo/, https://doi.org/10.17616/R33P44 | http://www.ncbi.nlm.nih.gov/gds | SCR_005012 | SciCrunch Registry | Gene Expression Omnibus (GEO), Entrez GEO DataSets, Gene Expression Data Sets, Gene Expression Omnibus, GEO, NCBI GEO DataSets, GEO DataSets, Gene Expression Omnibus DataSets | 2026-09-26 02:17:07 | 14348 | ||||
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ProteomeXchange Resource Report Resource Website 5000+ mentions |
ProteomeXchange (RRID:SCR_004055) | catalog, consortium, data or information resource, data repository, database, organization portal, portal, service resource, storage service resource | A data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas. | consortium, database, proteomics, MS proteomics, protein, mass spectrometry, bio.tools, FASEB list |
uses: Proteomics Identifications (PRIDE) uses: PeptideAtlas is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: bio.tools is listed by: Debian is affiliated with: Omics Discovery Index is related to: Proteomics Identifications (PRIDE) is related to: PeptideAtlas is related to: SIB Swiss Institute of Bioinformatics is related to: Mass spectrometry Interactive Virtual Environment (MassIVE) is related to: European Bioinformatics Institute is related to: ProteomeTools is related to: Integrated Proteome Resources has parent organization: European Bioinformatics Institute |
European Union 260558 | Public, The community can contribute to this resource | r3d100012122, nlx_158620, biotools:proteomexchange | http://proteomecentral.proteomexchange.org, https://bio.tools/proteomexchange, https://doi.org/10.17616/R32D29 | SCR_004055 | SciCrunch Registry | , ProteomeXchange, Proteome Exchange | 2026-09-26 02:17:07 | 6107 | ||||||
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Centers for Diabetes Translation Research Resource Report Resource Website 1+ mentions |
Centers for Diabetes Translation Research (RRID:SCR_015149) | data or information resource, disease-related portal, organization portal, portal, resource, topical portal | Centers that are part of an integrated program whose cores support and enhance diabetes type II translation research. The CDTRs aim to enhance the efficiency, productivity, effectiveness and multidisciplinary nature of diabetes translation research. | diabetes type ii, diabetes research, translation |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Vanderbilt Center for Diabetes Translation Research is affiliated with: New York Regional Center for Diabetes Translation Research is affiliated with: Chicago Center for Diabetes Translation Research is affiliated with: Georgia Center for Diabetes Translation Research is affiliated with: Michigan Center for Diabetes Translational Research is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Chicago Center for Diabetes Translation Research has organization facet: New York Regional Center for Diabetes Translation Research has organization facet: Georgia Center for Diabetes Translation Research has organization facet: Health Delivery Systems Center for Diabetes Translational Research has organization facet: Michigan Center for Diabetes Translational Research has organization facet: Vanderbilt Center for Diabetes Translation Research has organization facet: Washington University Center for Diabetes Translation Research |
Diabetes | NIDDK P30RFA-DK15-003 | Available to the research community | SCR_015149 | SciCrunch Registry | 2026-09-26 02:17:13 | 1 | ||||||||
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PhysioNet Resource Report Resource Website 500+ mentions |
PhysioNet (RRID:SCR_007345) | PhysioNet | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Collection of dissemination and exchange recorded biomedical signals and open-source software for analyzing them. Provides facilities for cooperative analysis of data and evaluation of proposed new algorithm. Providies free electronic access to PhysioBank data and PhysioToolkit software. Offers service and training via on-line tutorials to assist users at entry and more advanced levels. In cooperation with annual Computing in Cardiology conference, PhysioNet hosts series of challenges, in which researchers and students address unsolved problems of clinical or basic scientific interest using data and software provided by PhysioNet. All data included in PhysioBank, and all software included in PhysioToolkit, are carefully reviewed. Researchers are further invited to contribute data and software for review and possible inclusion in PhysioBank and PhysioToolkit. Please review guidelines before submitting material. | physiologic, physiology, signal, software, research, biomedical, cardiopulmonary, neural, healthy, patient, cardiac, death, congestive heart failure, epilepsy, gait, disorder, sleep apnea, cardioogy, computation, physiologic signal, workspace, time series, FASEB list, DRKB |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; is parent organization of: CHB-MIT Scalp EEG Database is parent organization of: EEG Motor Movement/Imagery Dataset is parent organization of: Sleep-EDF Database |
Aging | NIBIB ; NIGMS ; NIH EB037545 |
PMID:22256277 PMID:14716615 PMID:14632011 PMID:11446213 PMID:10851218 |
Free, Freely available | r3d100011561, DOI:10.17616/R3D06S, nif-0000-00250, DOI:10.25504/FAIRsharing.bemzxg, DOI:10.13026 | https://doi.org/10.17616/R3D06S, https://doi.org/10.17616/r3d06s, https://doi.org/10.13026/, https://dx.doi.org/10.13026/, https://fairsharing.org/10.25504/FAIRsharing.bemzxg, https://doi.org/10.17616/R3D06S | SCR_007345 | SciCrunch Registry | Physionet: The Research Resource for Complex Physiologic Signals, PhysioNet, PhysioNet: The Research Resource for Complex Physiologic Signals | 2026-09-26 02:17:09 | 841 | |||
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STRENDA Resource Report Resource Website 1+ mentions |
STRENDA (RRID:SCR_017422) | STRENDA | data or information resource, data repository, database, service resource, storage service resource | Storage and search platform supported by Beilstein-Institut that incorporates STRENDA Guidelines. For authors who prepare manuscript containing functional enzymology data, STRENDA DB provides means to ensure that data sets are complete and valid before submitting them to journal. | Storage, Beilstein Institut, functional, enzymology, data, complition, validation, dataset, guideline, standard, reporting |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FigShare |
Restricted | DOI:10.22011, DOI:10.17616/R3536N, DOI:10.25504/FAIRsharing.ekj9zx, r3d100012329 | http://www.strenda-db.org/, https://doi.org/10.17616/R3536N, https://doi.org/10.17616/r3536n, https://doi.org/10.22011/, https://dx.doi.org/10.22011/, https://fairsharing.org/10.25504/FAIRsharing.ekj9zx, https://doi.org/10.17616/R3536N | SCR_017422 | SciCrunch Registry | , Standards for Reporting Enzymology Data, Beilstein-Institut, STRENDA | 2026-09-26 02:15:58 | 3 | ||||||
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Image Data Resource (IDR) Resource Report Resource Website 1+ mentions |
Image Data Resource (IDR) (RRID:SCR_017421) | IDR | data repository, service resource, storage service resource | Public repository of reference image datasets from published scientific studies. Platform for publishing, mining and integrating bioimaging data, following FAIR principles and Euro-BioImaging/ELIXIR imaging strategy using OMERO and Bio-Formats open source software built by Open Microscopy Environment. Deployed on OpenStack cloud running on EMBL-EBI’s Embassy resource, it includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super resolution microscopy, and digital pathology. | Repository, reference, image, published, annotated, dataset, FAIR |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Free, Available for download, Freely available | r3d100012435 | https://doi.org/10.17616/R3XR0R | SCR_017421 | SciCrunch Registry | Image Data Resource, IDR, Image Data Resource (IDR) | 2026-09-26 02:15:58 | 1 | ||||||
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SICAS Medical Image Repository Resource Report Resource Website 1+ mentions |
SICAS Medical Image Repository (RRID:SCR_017420) | data repository, service resource, storage service resource | Medical image repository to store medical research data. | Medical, image, repository, store, data |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Free, Freely available | r3d100011560 | https://doi.org/10.17616/R3HP8C | SCR_017420 | SciCrunch Registry | Medical Image Repository, SICAS, SICAS Medical Image Repository | 2026-09-26 02:16:01 | 5 | |||||||
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European Variation Archive (EVA) Resource Report Resource Website 100+ mentions |
European Variation Archive (EVA) (RRID:SCR_017425) | EVA | data or information resource, data repository, database, service resource, storage service resource | Open access database of all types of genetic variation data from all species. Users can download data from any study, or submit their own data to archive. You can also query all variants by study, gene, chromosomal location or dbSNP identifier using our Variant Browser. | Collection, genetic, variation, data, chromosomal, location, dbSNP, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: bio.tools is listed by: Debian |
Free, Freely available | biotools:eva | https://bio.tools/eva | SCR_017425 | SciCrunch Registry | EVA, European Variation Archive | 2026-09-26 02:15:58 | 107 | ||||||
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Protein Circular Dichroism Data Bank (PCDDB) Resource Report Resource Website 1+ mentions |
Protein Circular Dichroism Data Bank (PCDDB) (RRID:SCR_017428) | PCDDB | data or information resource, data repository, database, service resource, storage service resource | Public repository for archiving circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. For authors to deposit experimental data as well as detailed information on methods and calculations associated with published work. Includes links for each entry to bioinformatics databases. Data are freely available to accessors either as single files or as complete data bank downloads. |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has parent organization: Birkbeck University of London; London; United Kingdom has parent organization: Queen Mary University of London; London; United Kingdom |
International Union of Pure and Applied Chemistry ; U.K. Biotechnology and Biological Research Council |
DOI:10.1093/nar/gkw796 | Restricted | r3d100010890 | http://pcddb.cryst.bbk.ac.uk/, https://doi.org/10.17616/R36W5H | SCR_017428 | SciCrunch Registry | Protein Circular Dichroism Data Bank, PCDDB, Protein Circular Dichroism Data Bank (PCDDB) | 2026-09-26 02:15:58 | 5 | |||||
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ChEMBL Resource Report Resource Website 1000+ mentions |
ChEMBL (RRID:SCR_014042) | data or information resource, database | Collection of bioactive drug-like small molecules that contains 2D structures, calculated properties and abstracted bioactivities. Used for drug discovery and chemical biology research. Clinical progress of new compounds is continuously integrated into the database. | database, compound, data, bioassay, bioactive, molecule, drug, discovery |
is used by: GEROprotectors is used by: PubChem is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
EMBL Member States ; EU Innovative Medicines Initiative ; GSK ; Medicines for Malaria Ventures ; Pfizer ; Syngenta ; Wellcome Trust |
PMID:21948594 | Public, Free, Freely available, Acknowledgement requested | r3d100010539 | https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320 | SCR_014042 | SciCrunch Registry | ChEMBLdb, Chembl, ChEMBL Database | 2026-09-26 02:15:21 | 3035 | |||||
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Coherent X-Ray Imaging Data Bank (CXIDB) Resource Report Resource Website 10+ mentions |
Coherent X-Ray Imaging Data Bank (CXIDB) (RRID:SCR_014722) | CXIDB | data or information resource, data repository, database, service resource, storage service resource | Database of Coherent X-ray Imaging (CXI) experiments. This data is widely accessible to researchers worldwide. | coherent xray imaging, cxi, experiment, database, reproducibility |
uses: DataCite is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Available to the research community | DOI:10.11577, r3d100011554 | https://doi.org/10.11577/, https://dx.doi.org/10.11577/ | SCR_014722 | SciCrunch Registry | Coherent X-ray Imaging Data Bank (CXIDB), CXIDB, Coherent X-ray Imaging Data Bank | 2026-09-26 02:15:28 | 23 | ||||||
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MetaboLights Resource Report Resource Website 500+ mentions |
MetaboLights (RRID:SCR_014663) | data or information resource, data repository, database, service resource, storage service resource | A cross-species, cross-technique database for metabolomics experiments, data, and derived information. It includes metabolite structures and their reference spectra, their biological roles, locations and concentrations, and experimental data from metabolic experiments. | metabolomics, database, structure, spectra, experimental data |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Metabolomics Workbench |
BBSRC BB/L024152/1 | Publicly available, The community can contribute to this resource | r3d100011556 | SCR_014663 | SciCrunch Registry | MetaboLights | 2026-09-26 02:15:28 | 889 | |||||||
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Mendeley Data Resource Report Resource Website 100+ mentions |
Mendeley Data (RRID:SCR_015671) | data or information resource, data repository, service resource, storage service resource | Cloud-based data repository for storing, publishing and accessing scientific data. Mendeley Data creates a permanent location and issues Force 11 compliant citations for uploaded data. | data repository, published data, citation, force 11, doi, dans, dans (data archiving and networking services) |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: Mendeley works with: DANS |
Free, Public, The research community can contribute to this resource, Account required | DOI:10.25504/FAIRsharing.3epmpp, DOI:10.17616/R3DD11, r3d100011868, DOI:10.17632 | https://doi.org/10.17616/R3DD11, https://doi.org/10.17616/r3dd11, https://doi.org/10.17632/, https://dx.doi.org/10.17632/, https://fairsharing.org/10.25504/FAIRsharing.3epmpp, https://doi.org/10.17616/R3DD11 | SCR_015671 | SciCrunch Registry | 2026-09-26 02:15:35 | 239 | ||||||||
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Rodent Operant Bucket project Resource Report Resource Website |
Rodent Operant Bucket project (RRID:SCR_021565) | data or information resource, instrument resource, portal, project portal | Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms. | Instrument, operant chamber, Arduino microcontroller platform, train mice, reward respond, OpenBehavior |
is listed by: OpenBehavior is related to: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is related to: Rodent Operant Bucket |
DOI:10.3758/s13428-015-0603-2 | Free, Freely available | SCR_021565 | SciCrunch Registry | Rodent Operant Bucket, ROBucket | 2026-09-26 02:16:57 | 0 | ||||||||
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Analysis, Visualization, and Informatics Lab-space (AnVIL) Resource Report Resource Website 10+ mentions |
Analysis, Visualization, and Informatics Lab-space (AnVIL) (RRID:SCR_017469) | AnVIL | data or information resource, data repository, portal, project portal, service resource, storage service resource | Portal to facilitate integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by National Institutes of Health or by other agencies that support human genomics research. Resource for genomic scientific community, that leverages cloud based infrastructure for democratizing genomic data access, sharing and computing across large genomic, and genomic related data sets. Component of federated data ecosystem, and is expected to collaborate and integrate with other genomic data resources through adoption of FAIR (Findable, Accessible, Interoperable, Reusable) principles, as their specifications emerge from scientific community. Will provide collaborative environment, where datasets and analysis workflows can be shared within consortium and be prepared for public release to broad scientific community through AnVIL user interfaces. | Dataset, NHGRI, program, NIH, initiative, funded, human, genomic, data, access, sharing, FAIR, analysis, workflow |
is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
NIH | Restricted | https://www.genome.gov/Funded-Programs-Projects/Computational-Genomics-and-Data-Science-Program/Genomic-Analysis-Visualization-Informatics-Lab-space-AnVIL | SCR_017469 | SciCrunch Registry | Visualization, and Informatics Lab-space, AnVIL, Analysis Visualization and Informatics Lab-space, Analysis | 2026-09-26 02:15:59 | 31 | ||||||
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University of Edinburgh; Scotland; United Kingdom Resource Report Resource Website 10+ mentions |
University of Edinburgh; Scotland; United Kingdom (RRID:SCR_011637) | university | Research university in Edinburgh, Scotland, founded in 1582. Has five main campuses. Known for arts, humanities and computer science. |
is related to: International AMD Genetics Consortium is parent organization of: Schizophrenia and Bipolar Disorder Genetics Blog is parent organization of: Neural Open Simulation is parent organization of: eMouseAtlas is parent organization of: flytrap is parent organization of: nematodes.org is parent organization of: BrainTrap: Fly Brain Protein Trap Database is parent organization of: Roslin Wellcome Trust Tick Cell Biobank is parent organization of: Virtual Fly Brain is parent organization of: COBrA is parent organization of: BioLayout Express 3D is parent organization of: Protein-Protein Interaction Database is parent organization of: GPX-Macrophage is parent organization of: LumbriBASE is parent organization of: BoLA Nomenclature: International Society for Animal Genetics is parent organization of: CaDBase: Genetic diversity in cattle is parent organization of: CVonline: The Evolving, Distributed, Non-Proprietary Online Compendium of Computer Vision is parent organization of: FigTree is parent organization of: CAMARADES Protocols for Systematic Reviews of Animal Studies is parent organization of: BEAST is parent organization of: Edinburgh Brain and Tissue Banks is parent organization of: University of Edinburgh GenePool Next Generation Sequencing and Bioinformatics is parent organization of: University of Edinburgh Labs and Facilities is parent organization of: Roslin Institute Labs and Facilities is parent organization of: University of Edinburgh Immunodetection and Imaging is parent organization of: Queens Medical Research Institute Labs and Facilities is parent organization of: GeneProf is parent organization of: NCJDSU is parent organization of: Kidney Development Database is parent organization of: Genes to Cognition - Biological Resources is parent organization of: 959 Nematode Genomes is parent organization of: Biological General Repository for Interaction Datasets (BioGRID) is parent organization of: Parallel Stochastic Ion Channel Simulator is parent organization of: Seq-Gen is parent organization of: eHistology is parent organization of: Simple Neurite Tracer is parent organization of: University of Edinburgh Wellcome Trust Centre for Cell Biology Bioinformatics Core Facility is parent organization of: University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility is parent organization of: GeneATLAS is parent organization of: Systematic Review Facility is parent organization of: University of Edinburgh Clinical Research Mass Spectrometry Core Facility is parent organization of: University of Edinburgh EdinOmics Core Facility is parent organization of: University of Edinburgh Genomics Core Facility is parent organization of: Automated Systematic Search Deduplicator is parent organization of: University of Edinburgh UK Zebrafish Imaging and Screening Core Facility is parent organization of: University of Edinburgh Institute of Genetics and Cancer IGC Mass Spectrometry Core Facility hosts: BRAINS Imagebank |
ISNI 0000 0004 1936 7988, , Crossref Funder ID 501100000848, GRID grid.4305.2, Wikidata Q160302, nlx_37972 | https://ror.org/01nrxwf90 | SCR_011637 | SciCrunch Registry | 2026-09-26 02:20:04 | 10 |
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