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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Canadian Open Neuroscience Platform Resource Report Resource Website 10+ mentions |
Canadian Open Neuroscience Platform (RRID:SCR_016433) | CONP | data or information resource, data repository, organization portal, portal, service resource, storage service resource | Web interface that facilitates open science for neuroscience community by simplifying global access to and sharing of datasets and tools. Portal internalizes typical data cycle of research project, beginning with data acquisition, followed by data processing with published tools, and ultimately publication of results with link to original dataset. Platform to form interactive network of collaborations in brain research, interdisciplinary student training, international partnerships, clinical translation and open publishing. Provides unified interface to Canadian neuroscience research community. Open neuroscience research with sharing of both data and methods, to create large-scale databases, development of standards for sharing, facilitation of advanced analytic strategies, open dissemination to global community of neuroscience data and methods, and establishment of training programs for next generation of computational neuroscience researchers. | interactive, network, brain, research, interdisciplinary, student, training, international, partnership, clinical, translation, open, publishing, Canada |
is related to: Brain Canada is related to: Health Canada |
Open source | r3d100013461 | https://github.com/CONP-PCNO/conp-portal, https://doi.org/10.17616/R31NJMVP | SCR_016433 | CONP:Canadian Open Neuroscience Platform | 2026-09-05 06:28:08 | 11 | ||||||
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User Friendly Functional Connectivity - UF²C Resource Report Resource Website 1+ mentions |
User Friendly Functional Connectivity - UF²C (RRID:SCR_016550) | UF²C | data analysis software, data processing software, image analysis software, software application, software resource, software toolkit | Software tool to standardize and facilitate connectivity studies through a graphical user interface and validated preset parameters. | standardize, functional, connectivity, brain, magnetic, resonance, imaging, graphical, user, interface, parameter |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: MATLAB |
FAPESP | Free, Available for download, Freely available | SCR_016550 | User Friendly Functional Connectivity | 2026-09-05 06:28:10 | 1 | |||||||
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nonparametricGGC_toolbox Resource Report Resource Website 1+ mentions |
nonparametricGGC_toolbox (RRID:SCR_016539) | nonparametricGGC | data analysis software, data processing software, software application, software resource | Software package for simulation framework and codes for estimating nonparametric Granger causality. Used to study brain functions. | nonparametric, Granger, causality, simulation, framework, code, estimate, brain, function | is related to: MATLAB | the Swiss National Science Foundation | Free, Available for download, Freely available | SCR_016539 | nonparametric Granger Geweke Causality | 2026-09-05 06:28:10 | 2 | |||||||
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Human Brain Variation Project Resource Report Resource Website 1+ mentions |
Human Brain Variation Project (RRID:SCR_028065) | data access protocol, data or information resource, portal, project portal, software resource, web service | Project provides data currently generated with support from the NIH Brain Initiative Cell Atlas Network (BICAN). Broad Institute collaboration supported by the NIH BRAIN Initiative, to create comprehensive atlas of cellular variation in the healthy human brain. It maps data from millions of cells across diverse individuals to understand how brain biology differs, helping researchers distinguish healthy variation from disease states. | Brain, data, healthy human brain, cells, |
is related to: BRAIN Initiative Cell Atlas Network is related to: BRAIN Initiative |
Free, Freely available | SCR_028065 | Human Brain Variation Project (McCarroll, Macosko) | 2026-09-05 06:36:05 | 1 | |||||||||
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SCANDAN-DICOM-labelling Resource Report Resource Website 1+ mentions |
SCANDAN-DICOM-labelling (RRID:SCR_028365) | software application, software resource, source code, text extraction software, text-mining software | Software tool for rules for DICOM tag based labelling. Regular expression used during the SCANDAN project to label MRI scans based on DICOM tag. | sequence, MRI, DICOM standard, Text-mining algorithm, Brain | DOI:10.1101/2025.10.21.25338469 | Free, Available for download, Freely available | SCR_028365 | 2026-09-05 06:36:11 | 1 | ||||||||||
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VERBENA Resource Report Resource Website |
VERBENA (RRID:SCR_024919) | software application, software resource | Software tool for quantification of perfusion and other haemodynamic parameters from Dynamic Susceptibility Contrast perfusion MRI of the brain. | Dynamic Susceptibility Contrast, quantification of perfusion, haemodynamic parameters, Dynamic Susceptibility Contrast perfusion MRI, brain | is a plug in for: FSL | Free, Freely available | SCR_024919 | VERBENA:Vascular Model Based Perfusion Quantification for DSC-MRI | 2026-09-05 06:34:45 | 0 | |||||||||
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FMRIB's Linear Image Registration Tool Resource Report Resource Website 10+ mentions |
FMRIB's Linear Image Registration Tool (RRID:SCR_024922) | FLIRT | data processing software, image analysis software, registration software, software application, software resource | Sotware automated robust and accurate tool for linear (affine) intra- and inter-modal brain image registration. | linear, affine, intra, inter, modal, brain, image, registration, brain image registration, | is a plug in for: FSL | Free, Freely available | SCR_024922 | 2026-09-05 06:34:45 | 17 | |||||||||
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XTRACT Resource Report Resource Website 1+ mentions |
XTRACT (RRID:SCR_024933) | software application, software resource | Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. | automated tractography, tractography, human, macaque, brain | is a plug in for: FSL | Biotechnology and Biological Sciences Research Council ; Human Connectome Project ; Marie Skłodowska-Curie Individual Fellowship Grant ; McDonnell Center for Systems Neuroscience at Washington University ; Medical Research Council PhD Studentship UK ; MRC Career Development Fellowship UK ; Netherlands Organization for Scientific Research NWO Netherlands ; NIH ; NIMH 1U54MH091657; Sir Henry Dale Wellcome Trust Fellowship UK ; UK Biobank Resource ; UK Engineering and Physical Sciences Research Council ; Wellcome Trust Collaborative Award UK ; Wellcome Trust grant UK ; Wellcome Trust |
PMID:32407993 | Free, Freely available | SCR_024933 | 2026-09-05 06:34:45 | 4 | ||||||||
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MarmotGraph Resource Report Resource Website |
MarmotGraph (RRID:SCR_027452) | knowledge graph, software application, software resource | Knowledge graph system developed for managing and organizing rich metadata objects, initially for the Human Brain Project (HBP) and now extended to be a more generic, domain-agnostic solution. It is associated with CSCS (Swiss National Supercomputing Centre) and aims to provide a comprehensive toolset and API for working with knowledge graphs. | Metadata, managing, system, neuroscience, experimental, data, human, brain, graph, database, terminology, ontology | is related to: EBRAINS Knowledge Graph | Free, Freely available, | SCR_027452 | Management Applications for Rich Metadata ObjecTs Graph | 2026-09-05 06:35:48 | 0 | |||||||||
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University of California at Irvine FIBRE Core Facility Resource Report Resource Website |
University of California at Irvine FIBRE Core Facility (RRID:SCR_027777) | access service resource, core facility, service resource | Facility for Imaging and Brain Research houses 3T Siemens Prisma scanner, mock scanner, and data analysis facilities. Research dedicated MRI scanning facility designed to suit wide range of basic and translational research programs by researchers across the UCI campus and beyond. | ABRF, 3T Siemens Prisma scanner, mock scanner, data analysis, imaging, brain |
is listed by: ABRF CoreMarketplace has parent organization: University of California at Irvine; California; USA |
Open | ABRF_5689 | https://coremarketplace.org/RRID:SCR_027777/?citation=1 | SCR_027777 | UC Irvine FIBRE Core Facility., UCI FIBRE, UCI Facility for Imaging and Brain Research | 2026-09-05 06:35:58 | 0 | |||||||
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Luxembourg Centre for Systems Biomedicine Resource Report Resource Website |
Luxembourg Centre for Systems Biomedicine (RRID:SCR_026168) | LCSB | institution | Research institute in Esch-sur-Alzette, Luxembourg to study brain and its diseases. Collaboration between biologists, medical and computer scientists, physicists, engineers as well as mathematicians offers new insights into complex biological mechanisms and disease processes, with the aim of developing new tools for diagnostics, prevention, and therapy. LCSB has established strategic partnerships with scientific partners worldwide and with all major biomedical research units in Luxembourg. Carries out collaborative projects with hospitals and research-oriented companies, accelerating translation of fundamental research results into clinical applications. | study brain and its diseases, diagnostics, prevention, therapy, collaborative projects, brain, | has parent organization: University of Luxembourg; Luxembourg; Luxembourg | SCR_026168 | 2026-09-05 06:35:14 | 0 | ||||||||||
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Clarity resources Resource Report Resource Website 10+ mentions |
Clarity resources (RRID:SCR_001387) | CLARITY Resources | data or information resource, experimental protocol, narrative resource, training resource, video resource | Protocols and other training materials related to the CLARITY protocol, a technique for the transformation of intact tissue into a nanoporous hydrogel-hybridized form (crosslinked to a three-dimensional network of hydrophilic polymers) that is fully assembled but optically transparent and macromolecule-permeable. | workshop, protocol, specimen preparation, transparent brain, glass brain, brain, neuroimaging, phenotyping, tissue, brain tissue, cortex, hippocampus, thalamus, ventral, brainstem |
is used by: NIF Data Federation is used by: Integrated Videos has parent organization: Stanford University; Stanford; California |
NIMH 4R01MH099647-05 | PMID:23575631 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152559 | SCR_001387 | Clarity resource | 2026-09-05 06:24:34 | 18 | |||||
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KESM brain atlas Resource Report Resource Website 1+ mentions |
KESM brain atlas (RRID:SCR_001559) | KESMBA | atlas, data or information resource, software resource, source code | A web-based, light-weight 3D volume viewer that serves large volumes (typically the whole brain) of high-resolution mouse brain images (~1.5 TB per brain, ~1 um resolution) from the Knife-Edge Scanning Microscope (KESM), invented by Bruce H. McCormick. Currently, KESMBA serves the following data sets: * Mouse: Whole-brain-scale Golgi (acquired 2008 spring): neuronal morphology: Choe et al. (2009) * Mouse: Whole-brain India Ink (acquired 2008 spring): vascular network: Choe et al. (2009); Mayerich et al. (2011); * Mouse: Whole-brain Golgi (acquired 2011 summer): neuronal morphology: Choe et al. (2011); Chung et al. (2011); * Mouse: Whole-brain Nissl (acquired 2009-2010 winter): somata (Choe et al. 2010) (Coming soon) They will ship you the full data set on a hard drive if you provide them with the hard drive and shipping cost. | golgi stain, 3d image, brain, connectomics, data set | has parent organization: Texas A and M University; Texas; USA | NINDS 1R01-NS54252 | PMID:22275895 | Free, Freely available | nlx_152869 | SCR_001559 | KESMBA: Knife-Edge Scanning Microscope Brain Atlas, Knife-Edge Scanning Microscope Brain Atlas | 2026-09-05 06:24:36 | 3 | |||||
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HyperBrain Resource Report Resource Website |
HyperBrain (RRID:SCR_001595) | HyperBrain | data or information resource, image collection, narrative resource, training material, video resource | An online tutorial for human neuroanatomy designed as a supplement to textbook and class learning or as a lab substitute when human specimens, slides and models are not available. HyperBrain includes thousand of images and hundreds of linked illustrated glossary terms, as well as movies, quizzes and interactive animations. Last updated 2012. | neuroanatomy, image, quiz, animation, tutorial, brain | has parent organization: University of Utah School of Medicine; Utah; USA | University of Utah; Utah; USA ; Slice of Life Development Fund |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153852 | SCR_001595 | HyperBrain: A Resource for Learning NeuroAnatomy, HyperBrain: An Online Neuroanatomy Tutorial | 2026-09-05 06:24:36 | 0 | ||||||
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University of California Davis Center for Neuroscience Resource Report Resource Website |
University of California Davis Center for Neuroscience (RRID:SCR_001640) | UCD Center of Neuroscience | university | Recognizing the importance of research in Neuroscience and its great promise, as well as the importance of educating the neuroscientists of the future, the University of California, Davis, in 1990, established The Center for Neuroscience. The Center has now become the focus of interdisciplinary studies in Cellular, Molecular, Systems, Cognitive and Translational Neuroscience, with a Faculty made up of world leaders in brain research. The Center occupies facilities especially designed to promote and foster interactions among the resident faculty, associated faculty, postdoctoral fellows, and graduate students, with state-of-the-art lab space and associated facilities such as cellular and molecular imaging, functional imaging of the human brain and extensive databasing facilities. The Center provides an attractive setting for seminar series that feature distinguished National and International guest speakers as well as speakers from the UC Davis community of scientists. The Center is home to a number of visiting scholars each year and enjoys a lively intellectual atmosphere. | neuroscience, imaging, brain | has parent organization: University of California at Davis; California; USA | Free, Freely available | nif-0000-02314 | SCR_001640 | UC Davis Center of Neuroscience | 2026-09-05 06:24:37 | 0 | |||||||
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Journal of Cerebral Blood Flow and Metabolism Resource Report Resource Website 10+ mentions |
Journal of Cerebral Blood Flow and Metabolism (RRID:SCR_001769) | JCBFM | journal article | The Journal of Cerebral Blood Flow & Metabolism stands at the interface between basic and clinical neurovascular research, and features timely and relevant research highlighting experimental, theoretical, and clinical aspects of brain circulation, metabolism and imaging. The journal is relevant to any physician or scientist with an interest in brain function, cerebrovascular disease, cerebral vascular regulation and brain metabolism, including neurologists, neurochemists, physiologists, pharmacologists, anesthesiologists, neuroradiologists, neurosurgeons, neuropathologists and neuroscientists. On this website, you will find the full text of articles published online weekly, in advance of print, the current issue and an archive of previous issues. You can also find general information about the journal, and more detailed information for readers, authors, referees, librarians, advertisers, and journalists. Most articles are published online before they appear in print. New papers are uploaded weekly to the Advance online publication (AOP) page. The online publication date is specified for each paper; these versions are identical to the printed version in every respect and may be cited using the digital object identifier (DOI). | function, anesthesiologist, article, blood, brain, cerebral, cerebrovascular, circulation, clinical, disease, imaging, metabolism, neurochemist, neurologist, neuropathologist, neuroradiologist, neuroscientist, neurosurgeon, neurovascular, pharmacologist, physiologist, regulation, vascular |
is related to: ISCBFM - International Society for Cerebral Blood Flow and Metabolism has parent organization: Nature Publishing Group |
Free, Freely available | nif-0000-10274 | SCR_001769 | 2026-09-05 06:24:39 | 36 | ||||||||
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Brainstorm Resource Report Resource Website 500+ mentions |
Brainstorm (RRID:SCR_001761) | Brainstorm | data analysis software, data processing software, data visualization software, software application, software resource | Software as collaborative, open source application dedicated to analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal invasive neurophysiology. User-Friendly Application for MEG/EEG Analysis. | MEG, EEG, data, magnetoencephalography, electroencephalography, visualization, processing, analysis, brain, recording, fNIRS, ECoG, electrophysiology |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: OpenMEEG is related to: Open MEG Archive is related to: MATLAB has parent organization: University of Southern California; Los Angeles; USA |
CNRS ; McGill University ; NIBIB R01 EB000473; NIBIB R01 EB002010; NIBIB R01 EB009048; NIBIB R01 EB026299 |
PMID:21584256 | Free, Available for download, Freely available | nif-0000-10267 | http://www.nitrc.org/projects/bst, https://github.com/brainstorm-tools/brainstorm3 | SCR_001761 | brainstorm3 | 2026-09-05 06:24:38 | 622 | ||||
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Dynamic Brain Platform Resource Report Resource Website 1+ mentions |
Dynamic Brain Platform (RRID:SCR_001754) | DBPF | atlas, bibliography, data or information resource, data repository, data set, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19. 2022. Platform to promote studies on dynamic principles of brain functions through unifying experimental and computational approaches in cellular, local circuit, global network and behavioral levels. Provides services such as data sets, popular research findings and articles and current developments in field. This site has been archived since FY2019 and is no longer updated. | collaboration, glial cell, interaction, model, network, neuron, neuron-glia network, numerical tool, paper, protein, publish, tool, book, neural dynamics, brain, stimulus, book, conference, presentation, simulation, paper, simulator, experimental stimuli, poster, data sharing |
is related to: INCF Japan Node has parent organization: RIKEN Brain Science Institute |
Free, Freely available | SCR_001812, nif-0000-10262, nif-0000-10377 | https://nimg.neuroinf.jp/ | SCR_001754 | Neuro-Imaging Platform, Dynamic Brain PF | 2026-09-05 06:24:38 | 1 | ||||||
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Functional Anatomy of the Cerebro-Cerebellar System (FACCS) Resource Report Resource Website |
Functional Anatomy of the Cerebro-Cerebellar System (FACCS) (RRID:SCR_001661) | FACCS | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Public neuroscience database providing a collection of published data describing structure and structure-function relationships in one of the largest projection systems of the brain: the cerebro-cerebellar system. It also gives access to a suite of tools that allow the user to visualize and analyze any selected combination of data sets. Contact them if you are interested in contributing data. The overall goal is to improve communication of results and permit re-use of previously published data in new contexts. FACCS is a part of the Rat Brain WorkBench, a new research and development project funded by The Research Council of Norway, the Centre for Molecular Biology and Neuroscience, and the European Union. The project is directed by Jan G. Bjaalie, Centre for Molecular Biology and Neuroscience & Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway. | axonal tracer, axon tracing, brain, cerebellum, cerebral cortex, cerebro-cerebellar function, cerebro-cerebellar structure, cerebro-cerebellar system, injection, injection site, labeled cells, labeled fibers, pontine nuclear complex, pontine nuclei, video, cerebellar cortex | has parent organization: University of Oslo; Oslo; Norway | Research Council of Norway ; Centre for Molecular Biology and Neuroscience ; European Union |
PMID:17426352 PMID:16344144 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02317 | SCR_001661 | Functional Anatomy of the Cerebro-Cerebellar System | 2026-09-05 06:24:37 | 0 | |||||
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Salk Institute for Medical Research: Laboratory for Cognitive Neuroscience Resource Report Resource Website |
Salk Institute for Medical Research: Laboratory for Cognitive Neuroscience (RRID:SCR_001851) | Salk Institute LCN | data or information resource, portal, topical portal | The Salk Institute's Laboratory for Cognitive Neuroscience (LCN) is dedicated to the study of the neural and genetic underpinnings of language and cognition. The LCN organizes its resources into two research foci: Linking Gene, Brain, and Cognition, and Language, Modality and the Brain. Linking Gene, Brain, and Cognition: Behavioral Neurogenetics: - This research is designed to increase the understanding of genetically based disorders, to investigate the consequences of genetic alterations on the development of the brain, and to explore the resulting alteration of cognitive capabilities. Language, Modality, and the Brain: - The focus of this research is to obtain a greater understanding of how language and cognition are represented in the brain. Sponsors: This resource is supported by LCN. | gene, genetically based disorder, genetic alteration, genetics, brain, cognition, cognitive neuroscience, development, modality, neural, language | Free, Freely available | nif-0000-10415 | http://www.lcn.salk.edu/ | SCR_001851 | Salk Institute LCN | 2026-09-05 06:24:40 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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