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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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White Adipose Atlas Resource Report Resource Website 1+ mentions |
White Adipose Atlas (RRID:SCR_023625) | atlas, data or information resource | Single cell atlas of human and mouse white adipose tissue. | white adipose tissue, adipose tissue, human, mouse | Italian Ministry of University ; Lundbeck Foundation ; NHGRI 1K08 HG010155; NHGRI 1U01 HG011719; NIDDK 5P30 DK057521; NIDDK F32 DK124914; NIDDK P30 DK046200; NIDDK RC2 DK116691; NIDDK UM1 DK126185; Novo Nordisk Foundation ; Sarnoff Cardiovascular Research Foundation Fellowship |
PMID:35296864 | Free, Freely available | SCR_023625 | 2026-09-12 01:02:21 | 8 | |||||||||
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Acute Liver Failure Study Group Resource Report Resource Website |
Acute Liver Failure Study Group (RRID:SCR_001463) | ALFSG | biomaterial supply resource, material resource | Clinical research network for gathering prospective data and bio-samples on acute liver failure in adults since 1998. Clinical histories and laboratory and outcome data are available. Sample types include serum, plasma, urine, DNA, and liver tissue. | clinical network, research network, adult acute liver failure |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) is related to: Pediatric Acute Liver Failure Study has parent organization: University of Texas Southwestern Medical Center; Texas; USA |
Acute liver failure, Acute liver injury | NIDDK 2U01DK058369 | PMID:19524577 | Free, Freely Available | nlx_152690 | http://www8.utsouthwestern.edu/utsw/cda/dept25203/files/89624.html | SCR_001463 | Acute Liver Failure Study Group (ALFSG), UT Southwestern Acute Liver Failure Study Group, Adult Acute Liver Failure Study Group | 2026-09-12 01:02:26 | 0 | |||
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Nuclear Receptor Signaling Atlas Resource Report Resource Website 100+ mentions |
Nuclear Receptor Signaling Atlas (RRID:SCR_003287) | NURSA | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 25, 2022.Software tool as knowledge environment resource that accrues, develops, and communicates information that advances understanding of structure, function, and role in disease of nuclear receptors (NRs) and coregulators. It specifically seeks to elucidate roles played by NRs and coregulators in metabolism and development of metabolic disorders. Includes large validated data sets, access to reagents, new findings, library of annotated prior publications in field, and journal covering reviews and techniques.As of March 20, 2020, NURSA is succeeded by the Signaling Pathways Project (SPP). | nuclear receptor, coregulator, metabolism, metabolic disorder, type 2 diabetes, obesity, osteoporosis, lipid dysregulation, cardiovascular disease, oncology, regenerative medicine, environmental agent, genomics, proteomics, reagent, ligand, microarray, gene expression, data set, data analysis service, nuclear receptor signaling, signaling, high through put screening, receptor, ligand, journal, molecule, affinity purification, q-pcr, chip-chip, animal model, antibody, cell line, primer, transcriptomine, clinical trial, disease, drug, data set |
is used by: NIF Data Federation is used by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine lists: NURSA Transcriptomine lists: STRING lists: Nuclear Receptor Cistrome is listed by: NIH Data Sharing Repositories is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) is related to: dkCOIN is related to: Integrated Manually Extracted Annotation has parent organization: Baylor College of Medicine; Houston; Texas |
Metabolic disorder, Type 2 diabetes mellitus, Obesity, Osteoporosis, Lipid dysregulation, Cardiovascular disease, Diabetes, Cancer | NHLBI ; NICHD ; NIDDK DK097748; NIEHS |
DOI:10.1101/401729 | Free, Freely available | nif-0000-03208 | https://dknet.org/about/NURSA_Archive | http://www.nursa.org | SCR_003287 | NURSA - Nuclear Receptor Signaling Atlas, NURSA - The Nuclear Receptor Signaling Atlas | 2026-09-12 01:02:29 | 135 | ||
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Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) Resource Report Resource Website |
Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) (RRID:SCR_014384) | GRADE\\t | data or information resource, data set, resource | A comparative study that aims to determine which combination of two medications is best for glycemic control in Type 2 Diabetes, has the fewest side effects, and is the most beneficial for overall health. GRADE is a randomized clinical trial of participants diagnosed with type 2 diabetes within the past 10 years who are already on metformin. Participants will be randomly assigned to 1 of 4 commonly-used glucose-lowering drugs (glimepiride, sitagliptin, liraglutide, and basal insulin glargine), plus metformin, and will be followed for up to 7 years. | glycemic reduction, comparative study, type 2 diabetes, clinical trial, randomized, glimepiride, sitagliptin, liraglutide, and basal insulin glargine, metformin |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers |
Type 2 diaberes, Diabetes | NIDDK | Documents for prospective researchers on ancillary studies are available | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014384 | Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study | 2026-09-12 01:01:02 | 0 | |||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology (RRID:SCR_015320) | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July,27,2022. Core facility that provides scientific and budgetary oversight for all CCEH activities. This includes training programs, high school summer internships, and and pilot and feasibility program for new projects. | cancer research, administrative support, budgetary oversight, training programs |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank is organization facet of: Hematology Centers |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015922 | SCR_015320 | 2026-09-12 01:01:03 | 0 | |||||||
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University of Michigan Center for Gastrointestinal Research Resource Report Resource Website |
University of Michigan Center for Gastrointestinal Research (RRID:SCR_015605) | UMCGR | data or information resource, organization portal, portal | Center whose goal is to investigate signal transduction mechanisms regulating homeostasis and GI disorders. Their approach includes studies on genetics and gene regulation, cellular signaling pathways, receptors and ion channels. | UMCGR, gastrointestinal research, GI functions, homeostasis, cellular signaling pathway, gene regulation |
is listed by: NIDDK Information Network (dkNET) is parent organization of: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core is parent organization of: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core is parent organization of: University of Michigan Center for Gastrointestinal Research Molecular Biology Core is parent organization of: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core has organization facet: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core has organization facet: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core has organization facet: University of Michigan Center for Gastrointestinal Research Molecular Biology Core has organization facet: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core is organization facet of: Digestive Disease Centers |
digestive disease | NIDDK P30 DK034933 | Available to affiliated researchers | SCR_015605 | 2026-09-12 01:01:03 | 0 | |||||||
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imctools Resource Report Resource Website 10+ mentions Rating or validation data |
imctools (RRID:SCR_017132) | IMCtools | data processing software, software application, software resource | Software Python package that implements preprocessing pipeline for imaging mass cytometry data. Can convert IMC raw files to tiff files that are used as inputs into CellProfiller, Ilastik, Fiji etc. | preprocessing, pipeline, imaging, mass, cytometry, data, convert, IMC, raw, file, TIFF |
has parent organization: University of Zurich; Zurich; Switzerland is a plug in for: Fiji |
European Research Council ; NIDDK UC4 DK108132; PhosphonetPPM and MetastasiX SystemsX grant ; Roche Postdoctoral Fellowship ; SNSF Assistant Professorship grant ; Swiss National Science Foundation |
PMID:29605184 | Free, Available for download, Freely available | https://bodenmillergroup.github.io/imctools/build/html/index.html | SCR_017132 | imaging mass spectrometry tools | 2026-09-12 01:01:05 | 25 | |||||
|
Chemoproteomic identification and therapeutic validation of proteins of metabolic significance Resource Report Resource Website |
Chemoproteomic identification and therapeutic validation of proteins of metabolic significance (RRID:SCR_015847) | data or information resource, database, portal, project portal | Database portal for a project that aims to discover and characterize new molecular pathways that can be targeted pharmacologically to revert obesity-linked adipocyte defects that drive systemic insulin resistance and type 2 diabetes. It works to identify in tandem physiologically-relevant proteins and chemical tools in order to expedite their functional annotation and therapeutic validation. | diabetes, type II diabetes, compound, genetic model, metabolic disease, molecular pathway, obesity, adipocyte, insulin resistance | has parent organization: Scripps Research Institute | obesity, Diabetes, Type II Diabetes | NIDDK DK099810; NIDDK DK114785 |
Freely available, Public | SCR_015847 | 2026-09-12 01:01:03 | 0 | ||||||||
|
Monogenic Diabetes Registry Resource Report Resource Website |
Monogenic Diabetes Registry (RRID:SCR_015883) | MDR, NDR, MODYR | data or information resource, database, portal, project portal | Research project that aims to learn more about the number of people who have monogenic diabetes, why and how it happens, and how best to treat it. Any adult or child with a known genetic cause of diabetes may join the MODY Registry. | monogenic, diabetes, neonatal, mody, diabetes research, genetic disease |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers has parent organization: University of Chicago; Illinois; USA |
Diabetes, Monogenic Diabetes, Neonatal Diabetes, MODY | NIDDK | Public, Diagnosed individuals may register, Freely available | SCR_015883 | MODY Registry, Neonatal Diabetes Registry | 2026-09-12 01:01:03 | 0 | ||||||
|
National Glycohemoglobin Standardization Program Resource Report Resource Website 500+ mentions |
National Glycohemoglobin Standardization Program (RRID:SCR_015885) | NGSP | data or information resource, portal, project portal | Project that aims to standardize Hemoglobin A1c test results to those of the Diabetes Control and Complications Trial (DCCT) and United Kingdom Prospective Diabetes Study (UKPDS) which established the direct relationships between HbA1c levels and outcome risks in patients with diabetes. | glycohemoglobin, diabetes, dcct, ukpds, hba1c, diabetes patient, hemoglobin, a1c |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers |
Diabetes | NIDDK UC4 DK096587 | Public | SCR_015885 | NGSP: National Glycohemoglobin Standardization Program | 2026-09-12 01:01:03 | 932 | ||||||
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mgatk Resource Report Resource Website 1+ mentions |
mgatk (RRID:SCR_021159) | data processing software, software application, software resource, software toolkit | Software python-based command line interface for processing .bam files with mitochondrial reads and generating high-quality heteroplasmy estimation from sequencing data. This package places a special emphasis on mitochondrial genotypes generated from single-cell genomics data, primarily mtscATAC-seq, but is generally applicable across other assays. | processing .bam files, mitochondrial reads, heteroplasmy estimation, sequencing data, mitochondrial genotypes, mtscATAC-seq | NCI F31 CA232670; NCI P01 CA206978; NCI R01 CA208756; NCI U10 CA180861; NHLBI R33 HL120791; NIDDK R01 DK103794 |
DOI:10.1038/s41587-020-0645-6 | Free, Available for download, Freely available | SCR_021159 | mitochondrial genome analysis toolkit | 2026-09-12 01:01:09 | 4 | ||||||||
|
ReBATE Resource Report Resource Website |
ReBATE (RRID:SCR_017139) | software resource, software toolkit | Open source software Python package to compare relief based feature selection algorithms used in data mining. Used for feature selection in any bioinformatics problem with potentially predictive features and target outcome variable, to detect feature interactions without examination of all feature combinations, to detect features involved in heterogeneous patterns of association such as genetic heterogeneity . | compare, relief, feature, algorithm, data, mining, variable, heterogeneous, pattern, genetic | has parent organization: University of Pennsylvania; Philadelphia; USA | NCATS TR001263; NEI EY022300; NHLBI HL134015; NIAID AI116794; NIDDK DK112217; NIEHS ES013508; NLM LM009012; NLM LM010098; NLM LM011360; Warren Center for Network and Data Science |
PMID:30030120 | Free, Available for download, Freely available | https://epistasislab.github.io/ReBATE/ | SCR_017139 | Relief Based Algorithm Training Environment | 2026-09-12 01:02:54 | 0 | ||||||
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Motif Alteration Genome wide to Globally Investigate Elements Resource Report Resource Website 1+ mentions |
Motif Alteration Genome wide to Globally Investigate Elements (RRID:SCR_021903) | MAGGIE | software resource, software toolkit | Software Python package for identifying motifs mediating transcription factor binding and function. Links mutations of motif to changes of epigenomic feature without assuming linear relationship. | Identifying motifs mediating transcription factor binding, identifying motifs mediating transcription factor function, motif mutations, epigenomic feature changes | Amsterdam Cardiovascular Sciences ; Foundation Leducq ; Netherlands Organization for Scientific Research ; NIDDK R01 DK091183 |
PMID:32657363 | Free, Available for download, Freely available | SCR_021903 | 2026-09-12 01:02:59 | 3 | ||||||||
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TALOS-N Resource Report Resource Website 1+ mentions |
TALOS-N (RRID:SCR_022800) | software resource, software toolkit | Software package for prediction of protein backbone and sidechain torsion angles from NMR chemical shifts. | Prediction of protein backbone, sidechain torsion angles, NMR chemical shifts | NIDDK | PMID:23728592 | Free, Available for download, Freely available | SCR_022800 | 2026-09-12 01:03:02 | 3 | |||||||||
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MaAsLin2 Resource Report Resource Website 100+ mentions |
MaAsLin2 (RRID:SCR_023241) | software resource, software toolkit | SoftwareR package that identifies microbial taxa correlated with factors of interest using generalized linear models and mixed models.Used for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. | Microbiome Multivariable Associations with Linear Models, | NHGRI R01HG005220; NIAID U19AI110820; NIDDK R24DK110499; NIDDK U54DK102557; NSF DEB-2028280 |
DOI:10.1371/journal.pcbi.1009442 | Free, Available for download, Freely available | https://huttenhower.sph.harvard.edu/maaslin/ | SCR_023241 | 2026-09-12 01:03:04 | 212 | ||||||||
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ataqv Resource Report Resource Website 1+ mentions |
ataqv (RRID:SCR_023112) | software resource, software toolkit | Software package for QC and visualization of ATAC-seq results. Used to examine aligned reads and report basic metrics, including reads mapped in proper pairs, optical or PCR duplicates, reads mapping to autosomal or mitochondrial references, ratio of short to mononucleosomal fragment counts, mapping quality, various kinds of problematic alignments. | QC of ATAC-seq results, visualization of ATAC-seq results, examine aligned reads, mapping quality, | American Diabetes Association Pathway to Stop Diabetes ; NHGRI T32 HG00040; NIDDK R01 DK-117960; NIDDK T32 DK101357; University of Michigan Rackham Predoctoral Fellowship |
PMID:32213349 | Free, Available for download, Freely available | https://parkerlab.github.io/ataqv/demo/ | SCR_023112 | 2026-09-12 01:03:03 | 7 | ||||||||
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mtradeR Resource Report Resource Website 1+ mentions |
mtradeR (RRID:SCR_022977) | software resource, software toolkit | Software R package implements Joint model with Matching and Regularization and simulation pipeline. Used to test association between taxa and disease risk, and adjusted for correlated taxa screened by pre-selection procedure in abundance and prevalence, individually. | test association between taxa and disease risk, correlated taxa screening, taxa and disease risk | American Lebanese Syrian Associated Charities ; NCI CA21765; NIDDK U24DK097771 |
PMID:36123651 | Free, Available for download, Freely available | SCR_022977 | Metagenomic TRajectory Analysis with Disease Endpoint and Risk factors | 2026-09-12 01:03:02 | 1 | ||||||||
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TIGER Data Portal Resource Report Resource Website 10+ mentions |
TIGER Data Portal (RRID:SCR_023626) | data or information resource, disease-related portal, portal, topical portal | Resource enables integrative exploration of genetic and epigenetic basis of development of Type 2 Diabetes, together with other associated functional, molecular and clinical data, centered in biology and role of pancreatic beta cells.The gene expression regulatory variation landscape of human pancreatic islets. | Type 2 Diabetes, genetic and epigenetic, functional data, molecular data, clinical data, pancreatic beta cells. | is related to: T2DSystems | Type 2 Diabetes | American Diabetes Association Innovative and Clinical Translational Award ; European Union Horizon 2020 ; NIDDK U01 DK085545; NIDDK U01 DK105535; Research England ; Spanish government ; Swiss State Secretariat for Education‚ Research and Innovation ; Wellcome Trust |
PMID:34644572 | SCR_023626 | Translational Human Pancreatic Islet Genotype Tissue-Expression Resource | 2026-09-12 01:00:40 | 23 | |||||||
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Machine Learning Made Easy Resource Report Resource Website 1+ mentions |
Machine Learning Made Easy (RRID:SCR_024439) | MLme | software resource, software toolkit | Software toolkit for Machine Learning Driven Data Analysis. Simplifies machine learning for data exploration, visualization and analysis. | Machine Learning Driven Data Analysis, | Federal Ministry of Education and Research of Germany ; NIDDK R01 DK127673; Swiss National Science Foundation ; Wings for Life Spinal Cord Research Foundation |
PMID:37461685 | Free, Available for download, Freely available | SCR_024439 | 2026-09-12 01:01:17 | 1 | ||||||||
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Diabetic Complications Consortium Resource Report Resource Website 100+ mentions |
Diabetic Complications Consortium (RRID:SCR_001415) | DiaComp | biomaterial supply resource, material resource, tissue bank | Consortium serving the diabetic complications community that sponsors annual meetings in complications-relevant scientific areas, solicits and funds pilot projects in high impact areas of complications research, and provides resources and data including animal models, protocols and methods, validation criteria, reagents and resources, histology, publications and bioinformatics for researchers conducting diabetic complications research. | diabetes, antibody, animal model, assay, experiment, histology, protocol, strain, phenotype, metabolic, cardiovascular, image, data set, community building portal, consortium, FASEB list |
is used by: NIF Data Federation is used by: NIDDK Information Network (dkNET) is listed by: NIDDK Information Network (dkNET) is listed by: One Mind Biospecimen Bank Listing is related to: dkCOIN has parent organization: Augusta University; Georgia; USA |
Diabetes, Diabetic complication, Nephropathy, Neuropathy, Retinopathy, Wound healing, Cardiomyopathy, Uropathy | NIDDK ; JDRF |
Free, Freely Available | nlx_152636 | http://www.amdcc.org/ | SCR_001415 | Animal Models of Diabetic Complications Consortium, AMDCC | 2026-09-12 01:01:22 | 237 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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