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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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NIH Toolbox Picture Vocabulary Test Resource Report Resource Website 1+ mentions |
NIH Toolbox Picture Vocabulary Test (RRID:SCR_000166) | Picture Vocabulary Test | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A measure of receptive vocabulary that is administered in a computerized adaptive format. The respondent is presented with an audio recording of a word and four photographic images on the computer screen and is asked to select the picture that most closely matches the meaning of the word. This test takes approximately 4 minutes to administer and is recommended for ages 3-85. | cognition, language, vocabulary | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157773 | SCR_000166 | 2026-09-03 05:03:43 | 1 | ||||||||
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HAPSCOPE Resource Report Resource Website |
HAPSCOPE (RRID:SCR_000838) | HAPSCOPE | software application, software resource | Software application that includes a comprehensive analysis pipeline and a sophisticated visualization tool for analyzing functionally annotated haplotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:12466546 | nlx_154393 | SCR_000838 | 2026-09-03 05:03:56 | 0 | ||||||||
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GENEHUNTER SAD Resource Report Resource Website |
GENEHUNTER SAD (RRID:SCR_000831) | GENEHUNTER SAD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 6th,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154198 | SCR_000831 | 2026-09-03 05:03:56 | 0 | ||||||||
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COMDS Resource Report Resource Website |
COMDS (RRID:SCR_000832) | COMDS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30,2022. Software application for combined segregation and linkage analysis, incorporating severity and diathesis. (entry from Genetic Analysis Software) | gene, genetic, genomic, sun fortran, (the command fsplit is needed), unix, sunos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154255 | SCR_000832 | 2026-09-03 05:04:00 | 0 | ||||||||
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Coastal Data Information Program Resource Report Resource Website 10+ mentions |
Coastal Data Information Program (RRID:SCR_024649) | CDIP | data or information resource, database | Network for monitoring waves and beaches and prediction of waves and shoreline change along coastlines of United States. Since 1975 program has produced database of publicly accessible environmental data for use by coastal engineers and planners, scientists, mariners, and marine enthusiasts. Forefront of coastal monitoring, developing numerous innovations in instrumentation, system control and management, computer hardware and software, field equipment, and installation techniques. Operated by Ocean Engineering Research Group, part of Integrative Oceanography Division at Scripps Institution of Oceanography. CDIP measures, analyzes, archives and disseminates coastal environment data for use by coastal engineers, planners and managers, as well as scientists and mariners. | monitoring waves and beaches, prediction of waves and shoreline change, environmental data, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | r3d100000020 | https://api.datacite.org/dois?prefix=10.18437 | SCR_024649 | UCSD CDIP | 2026-09-03 05:04:21 | 18 | ||||||
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Annotare Resource Report Resource Website |
Annotare (RRID:SCR_000319) | software application, software resource, standalone software | A software tool for annotating biomedical investigations and the resulting data, then producing a MAGE-TAB file. This software is a standalone desktop which features: an editor function, an annotation modifier, incorporation of terms from biomedical ontologies, standard templates for common experiment types, a design aid to help create a new document, and a validator that checks for syntactic and semantic violations. | biomedical research, magetab, editor, annotation, biomedical ontology | is listed by: OMICtools | NIBIB ; NCI ; NHGRI P41 HG003619 |
PMID:20733062 | Free, Available for download, Freely available | OMICS_00741 | SCR_000319 | annotare: a tool for annotating high-throughput biomedical investigations and resulting data | 2026-09-03 05:03:54 | 0 | ||||||
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CHAPLIN Resource Report Resource Website 1+ mentions |
CHAPLIN (RRID:SCR_000833) | CHAPLIN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022.Software application for identifying specific haplotypes or haplotype features that are associated with disease using genotype data from a case-control study. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran90, (cvf 6.6) with imsl routines, ms-windows, (2000/xp) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154266 | SCR_000833 | Case-control HAPLotype INference package | 2026-09-03 05:03:28 | 2 | |||||||
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CRIMAP Resource Report Resource Website 1+ mentions |
CRIMAP (RRID:SCR_000834) | CRIMAP | software application, software resource | Software application for constructing multilocus linkage map (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, xp | is listed by: Genetic Analysis Software | PMID:7750973 | Source code available | nlx_154276 | http://compgen.rutgers.edu/Crimap/ | SCR_000834 | 2026-09-03 05:04:28 | 5 | ||||||
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PEPPER Resource Report Resource Website 1+ mentions |
PEPPER (RRID:SCR_000431) | PEPPER | software application, software resource | A Cytoscape app designed to identify protein pathways / complexes as densely connected subnetworks from seed lists of proteins derived from pull-down assays (i.e AP-MS...). | plugin, protein-protein interaction, network, bio.tools |
is listed by: OMICtools is listed by: Cytoscape is listed by: bio.tools is listed by: Debian |
PMID:25138169 | Free, Available for download, Freely available | biotools:pepper, OMICS_05485 | https://bio.tools/pepper | SCR_000431 | Protein complex Expansion using Protein-Protein intERaction networks, Protein complex Expansion using Protein-Protein intERactions | 2026-09-03 05:03:58 | 1 | |||||
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dinifti Resource Report Resource Website 1+ mentions |
dinifti (RRID:SCR_000303) | dinifti | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software which converts DICOM images to NIfTI format. | analyze, console (text based), dicom, format conversion, freebsd, linux, magnetic resonance, nifti, posix/unix-like |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian has parent organization: New York University; New York; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155843 | http://www.nitrc.org/projects/dinifti, http://cbi.nyu.edu/software/dinifti.php, https://sources.debian.org/src/dicomnifti/ | SCR_000303 | NYU CBI DICOM to NIfTI Converter | 2026-09-03 05:03:44 | 2 | ||||||
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ShapeWorks Resource Report Resource Website 1+ mentions |
ShapeWorks (RRID:SCR_000424) | ShapeWorks | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on September 2, 2022. Software that is an open-source distribution of a new method for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on any specific surface parameterization. The method requires very little preprocessing or parameter tuning, and is applicable to a wide range of shape analysis problems, including nonmanifold surfaces and objects of arbitrary topology. The proposed correspondence point optimization uses an entropy-based minimization that balances the simplicity of the model (compactness) with the accuracy of the surface representations. The ShapeWorks software includes tools for preprocessing data, computing point-based shape models, and visualizing the results. | c++, console (text based), linux, macos, microsoft, magnetic resonance, posix/unix-like, rendering, shape analysis, surface rendering, visualization, win32 (ms windows), windows, workflow |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Utah; Utah; USA |
NCRR 5P41RR012553-15; NIGMS 8 P41 GM103545-15 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155961 | http://www.nitrc.org/projects/shapeworks | SCR_000424 | 2026-09-03 05:03:44 | 1 | ||||||
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American Tissue Services Foundation - ATSF Resource Report Resource Website |
American Tissue Services Foundation - ATSF (RRID:SCR_000549) | ATSF | biomaterial supply resource, material resource | A non-profit organization that facilitates the donation of tissues. It supports healthcare agencies, coroners, medical examiners and funeral professionals through donations and training, as well as partnering with organizations that utilize tissue in medical care and research. | tissue, donation, healthcare, medicine, research | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_97074 | SCR_000549 | American Tissue Services Foundation | 2026-09-03 05:04:11 | 0 | ||||||||
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ADEGENET Resource Report Resource Website 10+ mentions Issue |
ADEGENET (RRID:SCR_000825) | ADEGENET | software application, software resource | Software package dedicated to the handling of molecular marker data for multivariate analysis. This package is related to ADE4, a R package for multivariate analysis, graphics, phylogeny and spatial analysis. (entry from Genetic Analysis Software) | gene, genetic, genomic, r |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools |
PMID:21926124 PMID:18397895 DOI:10.1093/bioinformatics/btn129 |
Free, Available for download, Freely available | nlx_153996, nlx_154580, OMICS_11078, SCR_007239 | http://adegenet.r-forge.r-project.org/, https://sources.debian.org/src/r-cran-adegenet/ | SCR_000825 | R/ADEGENET | 2026-09-03 05:03:27 | 22 | |||||
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Cross Validation Resource Report Resource Website |
Cross Validation (RRID:SCR_000702) | service resource, training service resource | A model evaluation method for training someone to read data. There are three methods: the holdout method, K-fold cross validation, and leave-one-out cross validation. | model, modeling, training, data, holdout, k fold, cross, validation | has parent organization: Carnegie Mellon University; Pennsylvania; USA | nlx_19901 | SCR_000702 | 2026-09-03 05:03:55 | 0 | ||||||||||
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MUSC Health News Resource Report Resource Website |
MUSC Health News (RRID:SCR_000580) | MUSC Health News | data or information resource, narrative resource | MUSC's Health News RSS Feeds includes topic of a interest you can subscribe to by copying the corresponding URL into your preferred RSS software. You will automatically receive this feed each time it's published. Topics include: Brain Waves, Diabetes Health, Kids Health, Heart Care, Men's Health, Women's Health, and Community Blog. | health, news | has parent organization: Medical University of South Carolina; South Carolina; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144508 | SCR_000580 | MUSC Health News RSS Feeds, Medical University of South Carolina Health News | 2026-09-03 05:03:59 | 0 | |||||||
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National Center for Ecological Analysis and Synthesis Resource Report Resource Website 1+ mentions |
National Center for Ecological Analysis and Synthesis (RRID:SCR_024597) | NCEAS | data or information resource, organization portal, portal | Synthesis science center to help to transform ecology and environmental science to generate bigger insights. Leader in environmental data science, has led development of technological solutions to improve data access and management and efficiency of analyses, and helped set scientific standards in data ethics. | ecology and environmental science, environmental data science, set scientific standards in data ethics, |
is listed by: DataCite has parent organization: University of California; California; USA works with: Arctic Data Center |
Wikidata Q6971323, Crossref Funder ID 100014585, GRID grid.507579.9, ISNI 0000 0001 2190 7056 | https://api.datacite.org/dois?prefix=10.5063 | SCR_024597 | 2026-09-03 05:03:43 | 1 | ||||||||
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BMSR Short Courses Resource Report Resource Website |
BMSR Short Courses (RRID:SCR_000100) | BMSR Short Courses | short course, training resource | Short courses to train the broader biomedical research community in the modeling and simulation methodologies developed by Resource Scientists and others. | biomedical, modeling, simulation, methodology | has parent organization: Biomedical Simulations Resource | nlx_152569 | SCR_000100 | Biomedical Simulations Resource Short Courses | 2026-09-03 05:04:10 | 0 | ||||||||
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CIFTI Connectivity File Format Resource Report Resource Website 1+ mentions |
CIFTI Connectivity File Format (RRID:SCR_000852) | CIFTI Connectivity File Format | software application, software resource, systems interoperability software | Standardizes file formats for the storage of connectivity data. These formats are developed by the Human Connectome Project and other interested parties. Use the MEDIAWIKI entry in the menu on the left for more information about the CIFTI file formats. Access the CIFTI discussion forum using the Forums entry in the menu on the left. Subscribe to the discussion forum and you will be informed about issues involving the CIFTI file formats via email. | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155527 | SCR_000852 | Connectivity Informatics Technology Initiative Connectivity File Format | 2026-09-03 05:03:56 | 7 | |||||||
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PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden Resource Report Resource Website |
PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden (RRID:SCR_000615) | PRACSIS | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. PRACSIS (Prognosis and Risk in Acute Coronary Syndromes In Sweden) aims to study prognosis and its predictors in a consecutive series of patients with acute coronary syndrome (ACS). The study is comprised of patients between 18 and 80 years diagnosed at the coronary care unit at the Sahlgrenska University Hospital with unstable angina, non-ST-elevation MI or ST-elevation MI. Extensive information on medical history and blood samples for analyses of biochemical markers and genetic factors have been collected. | cardiac disease, predictor, prognosis, medical history, biochemical marker, genetic factor, biomarker, gene, genetics, adult |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Acute coronary syndrome | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151442 | SCR_000615 | PRACSIS - Prognosis Risk in Acute Coronary Syndromes In Sweden, Prognosis and Risk in Acute Coronary Syndromes In Sweden, KI Biobank - PRACSIS | 2026-09-03 05:04:26 | 0 | ||||||
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Brain Injury Knowledge Ontology Resource Report Resource Website |
Brain Injury Knowledge Ontology (RRID:SCR_024628) | BIKO | controlled vocabulary, data or information resource, ontology | Application ontology to formalize concepts and methods used in translational traumatic brain injury research. Multi species translational traumatic brain injury ontology to assist in formalizing concepts and methods used in traumatic brain injury research. | Multi species translational traumatic brain injury ontology, translational traumatic brain injury ontology, traumatic brain injury, | Free, Freely available | SCR_024628 | , BIKO-TBI, BIKO Traumatic Brain Injury, Brain Injury Knowledge Ontology Traumatic Brain Injury, BIKO TBI | 2026-09-03 05:03:52 | 0 |
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