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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Polygenic Score Catalog Resource Report Resource Website 100+ mentions |
Polygenic Score Catalog (RRID:SCR_023558) | data or information resource, database | Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation. | polygenic scores and relevant metadata, reproducibility and systematic evaluation, | British Heart Foundation ; Canadian Institutes of Health Research postdoctoral fellowship ; European Molecular Biology Laboratory ; Health Data Research UK ; Munz Chair of Cardiovascular Prediction and Prevention ; National Institute for Health Research ; NHGRI U41HG007823; UK Medical Research Council |
PMID:33692568 | Free, Freely available, | SCR_023558 | The Polygenic Score (PGS) Catalog | 2026-09-03 05:03:24 | 139 | ||||||||
|
ABAnnotate Resource Report Resource Website |
ABAnnotate (RRID:SCR_023833) | software resource, software toolkit, source code | Software toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data.Performs ensemble-based gene-category enrichment analysis on volumetric human neuroimaging data via brain-wide gene expression patterns derived from Allen Human Brain Atlas. Utilizes nonparametric method using spatial autocorrelation-corrected phenotype null maps for estimation of gene-category null ensembles. | Allen Human Brain Atlas, human neuroimaging data analysis, gene expression patterns, volumetric human neuroimaging data, gene-category null ensembles estimation, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023833 | 2026-09-03 05:04:18 | 0 | ||||||||||
|
Common Metabolic Disease Genome Atlas Resource Report Resource Website 1+ mentions |
Common Metabolic Disease Genome Atlas (RRID:SCR_022983) | CMDGA | atlas, data or information resource | Component of Accelerating Medicines Partnership Common Metabolic Diseases being developed at University of California San Diego as part of larger consortium of academic, industry and non-profit institutions worldwide. Resource is based on software developed by ENCODE DCC at Stanford University. Atlas provides epigenomics and other functional genomics data to promote understanding of genetic basis of common metabolic diseases. | AMP-CMD, Accelerating Medicines Partnership, Common Metabolic Diseases, epigenomics, functional genomics data, metabolic diseases |
is related to: Common Metabolic Diseases Knowledge Portal is related to: University of California at San Diego; California; USA |
metabolic diseases | Free, Freely available | SCR_022983 | 2026-09-03 05:03:23 | 9 | ||||||||
|
Atlas Densities Resource Report Resource Website |
Atlas Densities (RRID:SCR_023839) | software resource, software toolkit, source code | Software tools to compute densities in context of brain atlases. Used to create BBP Cell Atlas, using Allen Mouse Brain Atlas and collected literature density values.Provides list of volumetric files that provides cell type density estimates for each voxel of mouse brain volume. | Allen Mouse Brain Atlas, compute densities in context of brain atlases, create BBP Cell Atlas, collected literature density values, list of volumetric files, mouse brain volume, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023839 | 2026-09-03 05:04:19 | 0 | ||||||||||
|
AllFam Resource Report Resource Website 1+ mentions |
AllFam (RRID:SCR_021276) | data or information resource, database | Database for classifying allergenic proteins into protein families.You can browse lists of allergen families restricted by allergen source (plants, animals, fungi, bacteria) and route of exposure (inhalation, ingestion etc.) or search for specific allergens, sources or protein families. Every allergen family entry is linked to description of biochemical properties and allergological significance of family members as well as list of key references related to this family. | Allergen families, allergenic proteins, protein families, allergen source | Free, Freely available | SCR_021276 | AllFam database of allergen families | 2026-09-03 05:03:39 | 4 | ||||||||||
|
trinetx Resource Report Resource Website 100+ mentions |
trinetx (RRID:SCR_022760) | data or information resource, database | Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted. | Data, medical data, clinical facts, patients around the world, raw data is not available to authors, papers in medicine are being retracted | Restricted | SCR_022760 | 2026-09-03 05:04:15 | 295 | |||||||||||
|
OncoboxPD Resource Report Resource Website 1+ mentions |
OncoboxPD (RRID:SCR_023723) | data or information resource, database | Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways. | Gene Ontology terms enrichment patterns, human molecular pathways, curated collection, GO terms enrichment patterns, experimental expression data analysis, |
is related to: oncoboxlib is related to: Gene Ontology |
National Natural Science Foundation of China ; Qingdao Key Health Discipline Development Fund ; Qingdao Key Research Project ; Russian Science Foundation |
PMID:35615022 | Free, Freely available | SCR_023723 | Oncobox Pathway Databank | 2026-09-03 05:04:08 | 8 | |||||||
|
Atlas Alignment Meter Resource Report Resource Website |
Atlas Alignment Meter (RRID:SCR_023843) | software resource, software toolkit, source code | Software Python CLI and library to measure jaggyness of brain parcellation volume. Used to measure slice-to-slice jaggedness of volumetric dataset, only in form of NRRD file. | Allen Mouse Brain Atlas, measure jaggyness of brain parcellation volume, volumetric dataset, volumetric dataset jaggedness, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023843 | 2026-09-03 05:04:09 | 0 | ||||||||||
|
VDJbase Resource Report Resource Website 10+ mentions |
VDJbase (RRID:SCR_022599) | data or information resource, database | Open source adaptive immune receptor genotype and haplotype database. Core collection is inferred from immune receptor repertoire sequences and genomically derived material. Provides customisable reports, which allow users to study gene and allele usage in various ways. | Adaptive immune receptor genes, genotypes and haplotypes, immune receptor repertoire sequences, customisable reports, gene and allele | European Union ; NIAID R01AI125567; NIAID R01AI127877; NIAID R01AI130398 |
DOI:10.1093/nar/gkz872 | Free, Freely available | SCR_022599 | 2026-09-03 05:03:40 | 11 | |||||||||
|
IQAS Resource Report Resource Website |
IQAS (RRID:SCR_023146) | iqas, IQAS | software application, software resource, text extraction software | Modeling document labels using Latent Dirichlet Allocation is component tool under Integrated Quality Assurance System of Camarines Sur Polytechnic Colleges which categorizes text of particular document and use it for auto-tagging. | Camarines Sur Polytechnic Colleges, Modeling document labels, Latent Dirichlet Allocation, document labelling; auto-tagging; latent dirichlet allocation; | Free, Available for download, Freely available | DOI:10.5281/zenodo.7507492 | SCR_023146 | Integrated Quality Assurance System Modeling document labels using Latent Dirichlet Allocation Component Resources, Integrated Quality Assurance System MDL-LDA Component Resources, IQAS:MDL-LDA Component Resources | 2026-09-03 05:04:16 | 0 | ||||||||
|
BnTIR Resource Report Resource Website 10+ mentions |
BnTIR (RRID:SCR_023021) | data or information resource, database | Searchable database of Brassiceae genomic data hosted on the website. | Brassica napus, transcriptome information, Brassiceae genomic data | National Key Research and Development Plan of China | Free, Freely available | SCR_023021 | Brassica napus Transcriptome Information Resource | 2026-09-03 05:03:56 | 23 | |||||||||
|
Kinase Associated Neural Phospho Signaling Resource Report Resource Website 1+ mentions |
Kinase Associated Neural Phospho Signaling (RRID:SCR_023659) | KANPHOS | data or information resource, database | Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades. | Fujita Health University, Toyoake, Japan, phosphorylated sites, substrates, phosphorylation, kinase, protein phosphorylation, intracellular signaling cascades, |
works with: Allen Brain Atlas works with: HuGE Navigator - Human Genome Epidemiology Navigator works with: UniProtKB |
Free, Freely available | SCR_023659 | 2026-09-03 05:03:24 | 1 | |||||||||
|
Brassicaceae Database Resource Report Resource Website 100+ mentions |
Brassicaceae Database (RRID:SCR_023019) | BRAD | data or information resource, database | Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes. | genome sequences, Brassiceae species, published genomic data, syntenic genes, | National Natural Science Foundation of China ; National Programon Key Research Project |
DOI:10.1093/nar/gkab1057 | Free, Freely available | SCR_023019 | 2026-09-03 05:04:16 | 400 | ||||||||
|
ATCC STR database Resource Report Resource Website 1+ mentions |
ATCC STR database (RRID:SCR_019203) | data or information resource, database | Comprehensive database of Short Tandem Repeat DNA profiles for all of ATCC human cell lines. ATCC data collection as part of continuing efforts to characterize and authenticate cell lines in Cell Biology collection. | Short tandem repeat, DNA profile, ATCC human cell line, ATCC data collection | is related to: ATCC | Restricted | SCR_019203 | STR database, Short Tandem Repeat database | 2026-09-03 05:03:54 | 5 | |||||||||
|
Learning Locker Resource Report Resource Website |
Learning Locker (RRID:SCR_024401) | LRS | application programming interface, data access protocol, software resource | Open source software Learning Record Store implementing the xAPI (Tin Can API) e-learning standard.Type of data repository designed to store learning activity statements generated by xAPI (Tin Can) compliant learning activities. | LRS, xAPI, store learning activity statements, | Free, Available for download, Freely available | SCR_024401 | Learning Record Store | 2026-09-03 05:04:09 | 0 | |||||||||
|
PanglaoDB Resource Report Resource Website 100+ mentions |
PanglaoDB (RRID:SCR_022580) | data or information resource, database | Database for exploration of single cell RNA sequencing experiments from mouse and human. Collects and integrate data from multiple studies and present them through unified framework. | single cell RNA sequencing experiments, mouse data, human data, single cell RNA sequencing | Fondation Leducq—Transantlantic PlaqOmics Network ; Hjärt-och Lungfonden ; Karolinska Institutet/AstraZeneca Integrated Cardio Metabolic Centre ; Vetenskapsrådet |
PMID:30951143 | Free, Freely available | SCR_022580 | 2026-09-03 05:03:23 | 140 | |||||||||
|
LifeLegacy Foundation Resource Report Resource Website 1+ mentions |
LifeLegacy Foundation (RRID:SCR_000518) | biomaterial supply resource, material resource | A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research. | tissue, bank, medicine, research, body, transplant, biomaterial | is listed by: One Mind Biospecimen Bank Listing | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_37185 | SCR_000518 | LifeLegacy | 2026-09-03 05:03:54 | 1 | ||||||||
|
PCR Blog Resource Report Resource Website |
PCR Blog (RRID:SCR_000919) | data or information resource, narrative resource | A blog that contains reviews and information on PCR methods, applications and technology. Topics include tips and advice, troubleshooting, optimization and up-to-date information on the polymerase chain reaction. | pcr, method, application, technology, optimization, polymerase chain reaction, rna, dna, genetic | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_38687 | SCR_000919 | 2026-09-03 05:03:28 | 0 | ||||||||||
|
Albinism database Resource Report Resource Website 1+ mentions |
Albinism database (RRID:SCR_000632) | Albinism Database | data or information resource, database | Database of mutations associated with all major known forms of oculocutaneous and ocular albinism. The Albinism Database is part of the Locus Specific Mutation Databases of the Human Genome Variation Society and accepts the submission of new mutations. A link is provided for submission of new mutations. Columns in the database include: type of albinism, human locus, omim link, link to table of mutations and polymorphisms, and map of mutation locations. | oculocutaneous albinism, deletion, mutation, polymorphism, pigment, data set |
is listed by: 3DVC has parent organization: HGVS Locus Specific Mutation Databases has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
Oculocutaneous albinism, Ocular albinism, Albinism | Written permission required, The community can contribute to this resource | nif-0000-06691 | http://albinismdb.med.umn.edu/ | SCR_000632 | 2026-09-03 05:03:27 | 6 | ||||||
|
Open Context Resource Report Resource Website |
Open Context (RRID:SCR_024604) | data or information resource, organization portal, portal | Publishes documentation and data to make them discoverable and searchable on the Web. Publishing service archives data by integrating analyses, maps, media, and journals together. Open Context editors clean data and organize content. Every item receives unique identifier that allows citation of individual items. Your data publication receives DOI. Creative Commons licenses facilitate reuse. All Open Context data publications are preserved with California Digital Library. | research data, review, edit, annotate, publish, archive, digital documentation, DOI, Creative Commons license, California Digital Library, |
is listed by: DataCite has parent organization: University of California; California; USA |
Restricted | https://api.datacite.org/dois?prefix=10.6078 | SCR_024604 | 2026-09-03 05:04:09 | 0 |
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