Tools   Select Another Resource Report Type

https://www.pgscatalog.org/

Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation.

Proper citation: Polygenic Score Catalog (RRID:SCR_023558) Copy   

•   Source: SciCrunch Registry

https://github.com/LeonDLotter/ABAnnotate/tree/v0.1.0

Software toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data.Performs ensemble-based gene-category enrichment analysis on volumetric human neuroimaging data via brain-wide gene expression patterns derived from Allen Human Brain Atlas. Utilizes nonparametric method using spatial autocorrelation-corrected phenotype null maps for estimation of gene-category null ensembles.

Proper citation: ABAnnotate (RRID:SCR_023833) Copy   

•   Source: SciCrunch Registry

https://cmdga.org/

Component of Accelerating Medicines Partnership Common Metabolic Diseases being developed at University of California San Diego as part of larger consortium of academic, industry and non-profit institutions worldwide. Resource is based on software developed by ENCODE DCC at Stanford University. Atlas provides epigenomics and other functional genomics data to promote understanding of genetic basis of common metabolic diseases.

Proper citation: Common Metabolic Disease Genome Atlas (RRID:SCR_022983) Copy   

•   Source: SciCrunch Registry

https://github.com/BlueBrain/atlas-densities

Software tools to compute densities in context of brain atlases. Used to create BBP Cell Atlas, using Allen Mouse Brain Atlas and collected literature density values.Provides list of volumetric files that provides cell type density estimates for each voxel of mouse brain volume.

Proper citation: Atlas Densities (RRID:SCR_023839) Copy   

•   Source: SciCrunch Registry

http://www.meduniwien.ac.at/allfam/

Database for classifying allergenic proteins into protein families.You can browse lists of allergen families restricted by allergen source (plants, animals, fungi, bacteria) and route of exposure (inhalation, ingestion etc.) or search for specific allergens, sources or protein families. Every allergen family entry is linked to description of biochemical properties and allergological significance of family members as well as list of key references related to this family.

Proper citation: AllFam (RRID:SCR_021276) Copy   

•   Source: SciCrunch Registry

https://trinetx.com/

Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted.

Proper citation: trinetx (RRID:SCR_022760) Copy   

•   Source: SciCrunch Registry

https://open.oncobox.com/

Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways.

Proper citation: OncoboxPD (RRID:SCR_023723) Copy   

•   Source: SciCrunch Registry

https://github.com/BlueBrain/atlas-alignment-meter

Software Python CLI and library to measure jaggyness of brain parcellation volume. Used to measure slice-to-slice jaggedness of volumetric dataset, only in form of NRRD file.

Proper citation: Atlas Alignment Meter (RRID:SCR_023843) Copy   

•   Source: SciCrunch Registry

https://vdjbase.org/

Open source adaptive immune receptor genotype and haplotype database. Core collection is inferred from immune receptor repertoire sequences and genomically derived material. Provides customisable reports, which allow users to study gene and allele usage in various ways.

Proper citation: VDJbase (RRID:SCR_022599) Copy   

•   Source: SciCrunch Registry

https://github.com/CraigList056/iqas

Modeling document labels using Latent Dirichlet Allocation is component tool under Integrated Quality Assurance System of Camarines Sur Polytechnic Colleges which categorizes text of particular document and use it for auto-tagging.

Proper citation: IQAS (RRID:SCR_023146) Copy   

•   Source: SciCrunch Registry

http://yanglab.hzau.edu.cn/BnTIR

Searchable database of Brassiceae genomic data hosted on the website.

Proper citation: BnTIR (RRID:SCR_023021) Copy   

•   Source: SciCrunch Registry

https://kanphos.neuroinf.jp/

Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades.

Proper citation: Kinase Associated Neural Phospho Signaling (RRID:SCR_023659) Copy   

•   Source: SciCrunch Registry

http://brassicadb.cn

Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes.

Proper citation: Brassicaceae Database (RRID:SCR_023019) Copy   

•   Source: SciCrunch Registry

http://www.atcc.org/STR_Database.aspx

Comprehensive database of Short Tandem Repeat DNA profiles for all of ATCC human cell lines. ATCC data collection as part of continuing efforts to characterize and authenticate cell lines in Cell Biology collection.

Proper citation: ATCC STR database (RRID:SCR_019203) Copy   

•   Source: SciCrunch Registry

https://github.com/LearningLocker/learninglocker

Open source software Learning Record Store implementing the xAPI (Tin Can API) e-learning standard.Type of data repository designed to store learning activity statements generated by xAPI (Tin Can) compliant learning activities.

Proper citation: Learning Locker (RRID:SCR_024401) Copy   

•   Source: SciCrunch Registry

https://panglaodb.se/

Database for exploration of single cell RNA sequencing experiments from mouse and human. Collects and integrate data from multiple studies and present them through unified framework.

Proper citation: PanglaoDB (RRID:SCR_022580) Copy   

•   Source: SciCrunch Registry

http://www.lifelegacy.org

A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research.

Proper citation: LifeLegacy Foundation (RRID:SCR_000518) Copy   

•   Source: SciCrunch Registry

http://www.pcr-blog.com/

A blog that contains reviews and information on PCR methods, applications and technology. Topics include tips and advice, troubleshooting, optimization and up-to-date information on the polymerase chain reaction.

Proper citation: PCR Blog (RRID:SCR_000919) Copy   

•   Source: SciCrunch Registry

http://www.ifpcs.org/albinism/

Database of mutations associated with all major known forms of oculocutaneous and ocular albinism. The Albinism Database is part of the Locus Specific Mutation Databases of the Human Genome Variation Society and accepts the submission of new mutations. A link is provided for submission of new mutations. Columns in the database include: type of albinism, human locus, omim link, link to table of mutations and polymorphisms, and map of mutation locations.

Proper citation: Albinism database (RRID:SCR_000632) Copy   

•   Source: SciCrunch Registry

https://opencontext.org/

Publishes documentation and data to make them discoverable and searchable on the Web. Publishing service archives data by integrating analyses, maps, media, and journals together. Open Context editors clean data and organize content. Every item receives unique identifier that allows citation of individual items. Your data publication receives DOI. Creative Commons licenses facilitate reuse. All Open Context data publications are preserved with California Digital Library.

Proper citation: Open Context (RRID:SCR_024604) Copy   

•   Source: SciCrunch Registry